Gene detail

Detailed information of SKAU_T00380670 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00380670	PX SERINE/THREONINE KINASE PXK	CM056394.1	13879824	13890347	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00380670

CGGGAGCGAGTCGCAGCACACAGGAACTGATGTGAGCAGCAGACTGACACACGTCAGGGAATAATTGGATGGGAGTGGAAGAACTGTTGTGGCTTTGCCTTCACAGTCAAATGTACTTCACTCAGCCTGCATCTTCCTAATGGGGCTATTTTTAAAGCTGAAGTCTTGACCCTGGAGAACGAGTGGGTGCTACCTTTTCCTATAgcatttggcAAGACACCCTTATTCAGAGCGGCTTACACGGTGTGGCTACCAGGACCCACTGTACCAGCGCAGCAGGGGGCTAGTGAAGGACATGGCCACGCCCTTCGTCCCCGTGCCTGTCCCAATGGAGCGGGCGAGGTCCCGGGTTCGACGGACCGCCTCGCTGGGCAGCGTCTCCGCCAGCTCGGGCTCCCCCTCTAGGGCCCCCGGGGACGAGACCACACCCAAAACGGGAGGGGCGGCCTCCCGGGGCTGTCCCACCCCGCCTTTGGAATGCCAAAGCCCTGTGACCCGGACCAGGCTCAACGGAACAGGTCCCTCCATGGAGTACTCTAACCGACCCCGTTCCCATGACGACTCTTTGGACCACGACCGGCTGGAGCGGCCCATCACCCCTACGCTCCTGGGGTACGAGGTCATGGAGGAGCGTGCCAAATTTACCGTGTACAAAATCCTGGTCAGGAAGAGCCAGGAAGAGAGCTGGGTGGTGTTCCGCAGGTACACCGACTTTTCCAGGCTGAACAGCAAGctTAAGGAAATGTTCCCAGGATTCAGGTTTTCTCTGCCTCCCAAACGCTGGTTCAAGGACAACTATGACACCGAGTTCCTCGAAGAGAGGCAGCTGGGCCTACAGAGCTTCCTGCAGAACCTGGTCGCACACAAAGACATAGCCACCAACCTGGCAGTGAGAGAGTTCCTGTGTCTGGACGACCCTCCGGGCCCCTTCGACAGTCTGGAGGAGAGTCGGGCCTTCTGTGAGACCCTGGAGGAGACAAACTACCGGCTGCAGAAGGAGCTGGTTGAGAAGCAGAGGGAGATCGAGGAGCTGCGGAAGACCCTGGAGGAGAAGCAGCTTCACATTCACATCctggagaaaagaaaaaaTGGAGACTCACTGAGCCCAGAGAGTTTGGAGAGTCCCTGCAGGCTGTCTGGGGTCGGTAGTGAGGGCAGTACGGATGCAGACATAGACGTGGAGTCCTCCGCCGTGGAGGCCGACCAGGAAATAGACCAGGACAACAGCTGTGATATCCAGGCTCCCATGAAGGGTCACGCCGCCTGCTGGTGTGGGCCGGTCATCGGGTGCCCCCCGCCCGTCATTCAGGTGACCCAGGTCCTGGAGGCGCGGCCATTGCACTGACCACGCCCTCTGTCGGCACCCAGACGCAGGAATGCACAGAGGTCCTACGCTCTTATCCATATTTGTCCCCCCCTCACCCACCCCCTCTGTAGCTGTATAACTCTGGCTCTTATAGGACAGAGGATCATTCAGTACGTCCGTCTCTGTCCGGCCGAGCTCACGCTCATGATCGGATCAGACTTTTAGGGGTGGACTGATCCGGTGATGTCACCATTGTAGTAGAGATGGTGGAACCCCCACAGTGGGATGCAGAGTGGTTGGTTCCTGATCAGAGCATCTCATTGGCTGATTTTCCCTTTCTATCTAGAAATAGAAAACCCATGGTCACACTGCTCCCTTACCCACTCTTCCCTCTTCTCTCTGGAATCGAAGAAGCGGGGACGTTCCGATCTTCTTTGGCTTCGGCCGAAAAACGATACGAGGAGAGAGAAAGGGCTCCCAAGCTCTGGAATTTTGGGAGAACCCTTTGTGTTGAAGAGAGTGTAACCCTGACTCCCTTTGTCTGTACAGTGCTACTCACCTGTTACAACAATCAAAGCTGAATTGAATACCTGTAGCTCAACTTTAGCTGCTAATCATTAGTCAGTAGAAAGACTGGCCACCAATAAGAACTTAGTTCTTAGTTGAGCTACGTGATAAAAGGGTCAAGACCTTCATACTTGCCTGGGCCAAATGCttgtttgaaatactttaactcttTTGATGCTGGTAACAGATGTCTGAGAATTTTGAATGAAACTCTTGTTACTAACCAAAAATGTCCAATCGTACAAAATCATCTGAAGGTTGATGGAAATATATGTTTGAGTGCAATATATTTGATTGGTTTGAATGAGTCATCAAGTGATTTACAAGCTAATTGTAGCCCCACCCAGTATGAGGATCAAGCCAGCCTTCTATATAGGTTGGTATCTGACATCACATCTTTATTTTGAGGTCAACATGTTtctgaaattagttttccccCTCTAAAATTACATATGGATTCACAAAGGAGTGATAACTCTGGAATGTGATAGCATGAGCTGGTCAGGGTACCCACTCAGATCAGACAAATATTCAATTACTTTTCAAAGTGCAAACATCACAGCTACTTCAAGCTTTCAGGCTATATTTGCAAGGtagatatacagtacattttgaAGCCCATTACATTGCATTGCTGCAAAGGTACACACTTCACTCTCCAGTGACGTGTGACTGAAGATAGTAGAACTAATGTACAAGCCGGTGAGCTATTAAACGTGTTAGCATCGTTAGCACACTTAATAGCAAGGGACATCAGGATAGTGAGTTAGCATGTCGCTCActacacaggttttttttttttgtttttaatttgcccGATTTTCCATGATTGTTGTCAAGGACAGTGGAATATTCAAACATCTTCCTGTGACATTTATGCGACTTTCCAAGATGTACATATTATCGCTCCTTTTCCAGGACTGTGGGAAGTCAGAGTGGTGCGCCGAACACCGCCTCCGTAAACAGCCGCAGTCTGTGAGGTGGCTGTGTACGGAAGGCTGTCTCTGGGTTCCGTCCCGGCCGTTAGTGTGTTTCATGTTAAACGTGCGTCACCCCGTCGCACATCTGCTTCACTGGGGATAggttgtgtcttgtgtgtgttaATTGCCTCACACTTGCGTGTCTGATTTCGCTCTCTCTCGCAAAACCGCTAAAGAAATAACCCCTTCCAGCCTCAcggctctgtctgaagatatgtTGCCCTGaatgggtgggtgtgggtgtgtgtccgtgtgtgcgtgtgtgtgcgcgtgcgtgctggATAATGGTTGAAGTCCCTTTAGTGCACTTTAAATATGTAACCAGTTTTGTTTCATGTATTTGGTTCCGTGTTGTTTTTCGTGTGTGCGCGCAATGTGATGAGTTGTGACAACTTGTAGCCAAGACTGTAATTATTACTTTAACAGAATCGGCTTCATTTGAAGTAGAGTGCCTTAATACATGTTCATGTTTTCAGCTATAAATCAATGTCTGTCTAGTTTGTGTTACGCTTGTTAATCCCACTGAATTGCATTCAAAGTGCCTTTCTTTTAATGAAAtgcatgtattttattttctatttttttgtaccaagggtttttatttttctttctttctttttggttgAGGTAACTTTTTATGGCAGAATCCTCTGTGAAGACCATGCTCTTGTGGTATATTATGATGActgcttttttcccctctttaAAGAACAATAGAGGACCATACCGCACGCTAGCGTTTTAATACCTGTTAATACCACCTCCTGTGAGCATCTGGGTTGATGAGGACCCATCGCTATTCAATACCTCGTCAAATTTTGAGACCATCTGCTTGCAGTAAAGCTGCTTTGGATGTGTGAGGAGATTGTGGCCTGGCTCCATGTGCTGTAGAAAAAGTCCTGTTAACCTGTCAGAAATGTTAACTGCTCCATCCtgcaggtttttttatttattttttccagattttggtagccaattggaccctatgcaattcaattccccccgtgtagtaaccgctagagaatcgccgctacaacccctttgtccagtagcaggaaagagggcgccacgtcctcttcagggcgcgactcctcaagctcctaaccgtgattccagctcgcccagggctgtcttatgtgcggcgattccctccgagtccctccccccccaccccgggagcggccgccaattggcGCTCCCTCAAGgcgccggccatactcggatctggcaggaccggggatcgagcccccgatccttggggcgcaaccgcacaggcagaaagtctgcgcctttgcccgctgcaccaccgcggcaccATCCCGCTGATTTTTAAGATGTTTTTTGAGGAAGTGACCAACGTACTGTGGGTGATTTGGATTCCCCAAGGACCAGTGAATCATGTCCGTTTGCATATCTGTTGTGTGGAAGTTCACTGTACGCATAGGACGCATGCTGGAAAGTGGCCCCAAGTAACTTCTGTCCCTTTTTttggctgatccaggatcagcttgTAAACCCCTAATGCATACCCTAGCCATTTTGTTTGAAAATTTAATACAGATCTGGGGTCAGTGAGTCTACCTGTACCCACCTGTGGATGATGAGGAGTTCTGCGGTTTCCCACCAGCTTCCGGCAAAAATATGAGGTCATGTTTATTTTTTCATGTCATcggtcccccctccccccccccccccccttctttgtTTTGCATAGATACTGGTGTAACTTTGTTCACAATCTTAAGTGTAAGGACTTTAATGATTCTTAATATTGTATTGGGTCTTTTTAATAAACAATCTGATCTTTCTCACGGAACGCCGCATCTTTTGTTCAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00787	PX	PX domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001683	Domain	Phox homology	Interproscan
IPR036871	Homologous_superfamily	PX domain superfamily	Interproscan
IPR037911	Domain	SNX16, PX domain	Interproscan
IPR051837	Family	Sorting Nexin/PX Domain-Containing Protein Kinase-Like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22999	PX SERINE/THREONINE KINASE PXK	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005769	Cellular Component	early endosome	Interproscan
GO:0005770	Cellular Component	late endosome	Interproscan
GO:0006622	Biological Process	protein targeting to lysosome	Interproscan
GO:0008333	Biological Process	endosome to lysosome transport	Interproscan
GO:0031313	Cellular Component	extrinsic component of endosome membrane	Interproscan
GO:0035091	Molecular Function	phosphatidylinositol binding	Interproscan
GO:0045022	Biological Process	early endosome to late endosome transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-