Gene detail

Detailed information of SKAU_T00371820 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00371820	CELLULAR TUMOR ANTIGEN P53	CM056393.1	18665055	18692808	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00371820

ATGATGTGTCCTCCAGCCACCATCAGTGAACCTTTGAGTGTGAATGACTGTTGGCTGAATGACGGTTCACCCCTGGAGAGGCTGCTGTCAGAGGCTCCTCTACAGGAGAGCATTGATGTGGGGCTTTTTGACATGCCTGCGACCCCACCACCGCAGCCATCTGTATCTGCCCTGGATTGTGATGCCACCCTTAGCTCAACTGTGCCATCCACCACTGACTACCCGGGACTGCTGGGTTTCAAAGTGCGCTTTCTGAAGTCTGGCACTGCCAAGTCTGTCACATGCACCTTTTCCCCAGATCTAAACAAGCTGTTCTGCCAGCTGGATAAAACCTGCCCAGTTCAAATACTGGTGGATCACCCCCCTCCGCTGGGAGCAGTGATACGGGCGACTTCAGTGTATAAGAAGACTGAACACGTGGCCTCTGTGGTGCACCGGTGCCCACACCATGAGAAGGCCTCCGAGCACAACGAAGGTACTGCCCCCCCAAATCACTTGATTCGGGTGGAGGGCTGCCAGCGGGCCCACTACATGGAGGACGGCAAGACAAAGAGGCACAGTGTTGTAGTTCCATACGAAGCCCCCCAGCGCGGCTCGGAGTGCACCACGGTCCTGTACAAATACATGTGCAACTCCAGTTGCATGGGGGGAATGAACCGCCGGCCTATTTTAACAATCATCACATTGGAGACGAAAGAtGCGCAGCTCTTGGGCCGTCGCTGCTTTGAGGTGCGCGTGTGCGCCTGCCCTGGACGAGACCGGAAGACCGAGGAGGGCAACTCCCTCAAACAGCAGGAAAATACCGGTGCCAAGACCTCCGGCGTGACCAAACGCAGTTTCGACGAGGTATCTCAGACAGCCCCCCAAACTGAAGCAAACAAGAAAACCAAATCCAGCTCCGGCTCTGAGGAGGAGTTTTACACACTGCAGATCCGTGGGAGGGAGCGATATAAcatgcttaaaaaaataaatgacagcCTGGAGCTGGAGGATGTGATGCCAGCTGCTGATGTGGACAAATACAGGCAAACATTGAATGCCAAGAATGTGAGCAAGCGGGAGCGTGAAGATGAGCCAAGAAAAGGGAAGAAGCTGTTGAGGAAGGGAGAGAAAAAGGGACAAGGAAGCAGACCAGCTAAACTGGAATCACTGTTCCTGAGATTGGGGATGGGAAAGATAGGAATCCTGTTTCTCATAGTATGTGCCTGCTGCAGTGCAGAGCGGCAGTACTTCCCCCAGCACAATGCGTCCACCTGGGGGATGGCTCGACAGCACTGCCAGCTCTGCTACAAAGAGCTTGTCAGCCTCACTTCTGACAATATCCAGCTCCTGATCCAGAACCTGACTTCAGGCTACTGGGTCGGCCTGCGCCAGAATCTCAGCGCTCCCATGTTCTGGTCTCGGTGGTCCAACGGTGACCCAATGACCTTCCAGAACTGGTATCCAGGCCATCCCAAACTGCCACAGTGCACTGTCCAACTTGGGGATTTCTGCAATATCACAGAGCAGCAGGATGATGTTTGTATGATCCAGGTTGAAGAATTCTGTATGAACACGACAAATATCATAACAGAGTACATCCCCTCTCAGAGTATGTTCCTGACAAGTCAGGAAATGGAGATCCCTGAGAACCCTTGTGTGTCTCTGCTGAGTTCTGGCATGTGGATTGAGAAGAATTGCATTGAATTCTTACCATATATCTGTTATGAAGaccGCTTCTATGGCAAAGCAGCAGTCTTTAATGTGACCCAGAATAGCATGACAGTGAGCTGGATGGTTGGGCCTGAAGGCATTACCTTATACAGGGTGGAGGTGAGAGGAGACATTGACTTGACTGAGAACACAACTCACCTCACCATGGCCTTCGGTAATCTCACAGCAGGCACAAAGTACAGAGTCCAGGTGTTCCCTGTGAAGTGTGAGAGAGACATCAACCCACAGAATGCCACGTTCTATACCAAGCCTGAATGTGTCAGAAATCTCAGTGTCATAAATGTAACAAAGTACTCTGCCTTCCTCTCATGGGTCCAGCCAATGGGAAATCATTCATTCTACAAAGTGAAGGTGGATGGTCACTCTAACCTCACCGCACTCAATGTAACAAATGAATATAGGCAGATTGAACATCTCGGGCCAGGACAACAGTATACTTTTATTGTCAACGCTGAAGTGGAGGACCTGTTACTTGCAGGAGACACAGTCTCAACCTCAGCCCACACCATACCAGATAAGGTAAGGAACCTGACTGTCAGTGGGGTCACTACGGATACCATCACGCTAACATGGATACAGCCAGAGGGGAGCAGCTGTTGCTACAGAGTACGTGTCCAAGAGGAGAAGAAAAGTAACATTTTTTTCAATCAAACCTTGCATGGCGACCATCTTAATGTGGAAAATCTCACTGCGGGCACCAAGTTTTGGCTGAGTGTGGCAGCGCTAGCAGGGGTGATGCCGAATGACTCAGTGGAAGGAGAGGCTGTTACAATCATGGCTTATACCAtacCGTTCCCTGTTACAAATGTGACTTTGATGAGTTCCAGTGACTTCATCACAGCTAGTTGGAATCCCCCAGATGGCAACTTTGACTTCTATAGACTCAAGCTCAAACACCAAAATATTAATTGGAATGAAACCACTACCAACAGAACATTTCACAAATTTCAGAATCTGAATTCTGCCGTTAATTATACTGTAACCATCTACACAGAGTTGAAGCAGACATCTCTGCGGAGTAATGGTGTATACGAAGAGACATTCACCTTGCCACTCAAGCCAGAAAACCTTCAAGTTGTCAAACGCACCATGAACAGCACCAGCCTGAACTGGGATGTCCCAGAGAAGTTGAAAGGCAGTATGGTAAGCTATGGAGTCAAGTTCACCGCTGCCTTCTGGAATCACACTGGACGGAAGGAAGTACACAAAACCAATGTGACGCTCGAAGGGTTACACTCAGGAACCAACTATATGTTTGAAGTACAAACCTTGGCAGGCAACCTCTCGAGTGCATATATCTCTACTTCTGATCTCACAGTGCCCAAGAAAATGATATTAATTCTAAGTATGCAATGCCGCTCTCAATCACCACTGTTCCCTGAGAAGAATACTATCACTGAAAAAATCTTTGAAGAGTTGAATAAAATTGTGAAGAAAAGACTTGAGGACCAAGTGTACTGGAGTTTGGAGAAAAAAGAGATGAAAGACTCTTTCGCACACCCATAG

Transcript

SKAU_T00371820

TTGTGATCACCTGACACATCGCCTTTGAACTCTACTTAGCTCCACCTACACATTTTCGGGGAATTCCGAAAGTCAGAACGCGTGCTTTTCTAAAGGTAAAAGGATACAAAATGATTCGACGTGTCTGTTTACCTCaatcttaaaaaaaaatatatatgtgacGTCTGCTACGTATGTGCAGAGAGAGCTCAGAAAGATACCAAATTCCGGACACAGAAGTGACTTGACCAGGAGAGCTTTGTGTGGTGCGTCTGTCCTGACATCGTGTGCCTGAGTGACAGGCAGGAGGGACAAATGAGCGAGCAGGAGGCCGAGGGCCCTCCCCCTGAGCCAGGAGTCATTTCAGGTGCTATGGAACATGATGTGTCCTCCAGCCACCATCAGTGAACCTTTGAGTGTGAATGACTGTTGGCTGAATGACGGTTCACCCCTGGAGAGGCTGCTGTCAGAGGCTCCTCTACAGGAGAGCATTGATGTGGGGCTTTTTGACATGCCTGCGACCCCACCACCGCAGCCATCTGTATCTGCCCTGGATTGTGATGCCACCCTTAGCTCAACTGTGCCATCCACCACTGACTACCCGGGACTGCTGGGTTTCAAAGTGCGCTTTCTGAAGTCTGGCACTGCCAAGTCTGTCACATGCACCTTTTCCCCAGATCTAAACAAGCTGTTCTGCCAGCTGGATAAAACCTGCCCAGTTCAAATACTGGTGGATCACCCCCCTCCGCTGGGAGCAGTGATACGGGCGACTTCAGTGTATAAGAAGACTGAACACGTGGCCTCTGTGGTGCACCGGTGCCCACACCATGAGAAGGCCTCCGAGCACAACGAAGGTACTGCCCCCCCAAATCACTTGATTCGGGTGGAGGGCTGCCAGCGGGCCCACTACATGGAGGACGGCAAGACAAAGAGGCACAGTGTTGTAGTTCCATACGAAGCCCCCCAGCGCGGCTCGGAGTGCACCACGGTCCTGTACAAATACATGTGCAACTCCAGTTGCATGGGGGGAATGAACCGCCGGCCTATTTTAACAATCATCACATTGGAGACGAAAGAtGCGCAGCTCTTGGGCCGTCGCTGCTTTGAGGTGCGCGTGTGCGCCTGCCCTGGACGAGACCGGAAGACCGAGGAGGGCAACTCCCTCAAACAGCAGGAAAATACCGGTGCCAAGACCTCCGGCGTGACCAAACGCAGTTTCGACGAGGTATCTCAGACAGCCCCCCAAACTGAAGCAAACAAGAAAACCAAATCCAGCTCCGGCTCTGAGGAGGAGTTTTACACACTGCAGATCCGTGGGAGGGAGCGATATAAcatgcttaaaaaaataaatgacagcCTGGAGCTGGAGGATGTGATGCCAGCTGCTGATGTGGACAAATACAGGCAAACATTGAATGCCAAGAATGTGAGCAAGCGGGAGCGTGAAGATGAGCCAAGAAAAGGGAAGAAGCTGTTGAGGAAGGGAGAGAAAAAGGGACAAGGAAGCAGACCAGCTAAACTGGAATCACTGTTCCTGAGATTGGGGATGGGAAAGATAGGAATCCTGTTTCTCATAGTATGTGCCTGCTGCAGTGCAGAGCGGCAGTACTTCCCCCAGCACAATGCGTCCACCTGGGGGATGGCTCGACAGCACTGCCAGCTCTGCTACAAAGAGCTTGTCAGCCTCACTTCTGACAATATCCAGCTCCTGATCCAGAACCTGACTTCAGGCTACTGGGTCGGCCTGCGCCAGAATCTCAGCGCTCCCATGTTCTGGTCTCGGTGGTCCAACGGTGACCCAATGACCTTCCAGAACTGGTATCCAGGCCATCCCAAACTGCCACAGTGCACTGTCCAACTTGGGGATTTCTGCAATATCACAGAGCAGCAGGATGATGTTTGTATGATCCAGGTTGAAGAATTCTGTATGAACACGACAAATATCATAACAGAGTACATCCCCTCTCAGAGTATGTTCCTGACAAGTCAGGAAATGGAGATCCCTGAGAACCCTTGTGTGTCTCTGCTGAGTTCTGGCATGTGGATTGAGAAGAATTGCATTGAATTCTTACCATATATCTGTTATGAAGaccGCTTCTATGGCAAAGCAGCAGTCTTTAATGTGACCCAGAATAGCATGACAGTGAGCTGGATGGTTGGGCCTGAAGGCATTACCTTATACAGGGTGGAGGTGAGAGGAGACATTGACTTGACTGAGAACACAACTCACCTCACCATGGCCTTCGGTAATCTCACAGCAGGCACAAAGTACAGAGTCCAGGTGTTCCCTGTGAAGTGTGAGAGAGACATCAACCCACAGAATGCCACGTTCTATACCAAGCCTGAATGTGTCAGAAATCTCAGTGTCATAAATGTAACAAAGTACTCTGCCTTCCTCTCATGGGTCCAGCCAATGGGAAATCATTCATTCTACAAAGTGAAGGTGGATGGTCACTCTAACCTCACCGCACTCAATGTAACAAATGAATATAGGCAGATTGAACATCTCGGGCCAGGACAACAGTATACTTTTATTGTCAACGCTGAAGTGGAGGACCTGTTACTTGCAGGAGACACAGTCTCAACCTCAGCCCACACCATACCAGATAAGGTAAGGAACCTGACTGTCAGTGGGGTCACTACGGATACCATCACGCTAACATGGATACAGCCAGAGGGGAGCAGCTGTTGCTACAGAGTACGTGTCCAAGAGGAGAAGAAAAGTAACATTTTTTTCAATCAAACCTTGCATGGCGACCATCTTAATGTGGAAAATCTCACTGCGGGCACCAAGTTTTGGCTGAGTGTGGCAGCGCTAGCAGGGGTGATGCCGAATGACTCAGTGGAAGGAGAGGCTGTTACAATCATGGCTTATACCAtacCGTTCCCTGTTACAAATGTGACTTTGATGAGTTCCAGTGACTTCATCACAGCTAGTTGGAATCCCCCAGATGGCAACTTTGACTTCTATAGACTCAAGCTCAAACACCAAAATATTAATTGGAATGAAACCACTACCAACAGAACATTTCACAAATTTCAGAATCTGAATTCTGCCGTTAATTATACTGTAACCATCTACACAGAGTTGAAGCAGACATCTCTGCGGAGTAATGGTGTATACGAAGAGACATTCACCTTGCCACTCAAGCCAGAAAACCTTCAAGTTGTCAAACGCACCATGAACAGCACCAGCCTGAACTGGGATGTCCCAGAGAAGTTGAAAGGCAGTATGGTAAGCTATGGAGTCAAGTTCACCGCTGCCTTCTGGAATCACACTGGACGGAAGGAAGTACACAAAACCAATGTGACGCTCGAAGGGTTACACTCAGGAACCAACTATATGTTTGAAGTACAAACCTTGGCAGGCAACCTCTCGAGTGCATATATCTCTACTTCTGATCTCACAGTGCCCAAGAAAATGATATTAATTCTAAGTATGCAATGCCGCTCTCAATCACCACTGTTCCCTGAGAAGAATACTATCACTGAAAAAATCTTTGAAGAGTTGAATAAAATTGTGAAGAAAAGACTTGAGGACCAAGTGTACTGGAGTTTGGAGAAAAAAGAGATGAAAGACTCTTTCGCACACCCATAGAAAGGCACATGTTCGCCCTCTACTGGACACTAATGAGTTTTGGGTTTTAATCTTCTGAGACTGCTGTTCTCTGTTTTTTTgcagtttaaaataatgttaatGAACATACAACAAAGTGGAATCATAAACCGTGCCAC

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	P53

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF00870	P53	P53 DNA-binding domain	Domain	Interproscan
PF07710	P53_tetramer	P53 tetramerisation motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001304	Domain	C-type lectin-like	Interproscan
IPR002117	Family	p53 tumour suppressor family	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR010991	Domain	p53, tetramerisation domain	Interproscan
IPR011615	Domain	p53, DNA-binding domain	Interproscan
IPR012346	Homologous_superfamily	p53/RUNT-type transcription factor, DNA-binding domain superfamily	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR016186	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan
IPR016187	Homologous_superfamily	C-type lectin fold	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR036674	Homologous_superfamily	p53-like tetramerisation domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11447	CELLULAR TUMOR ANTIGEN P53	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006915	Biological Process	apoptotic process	Interproscan
GO:0051262	Biological Process	protein tetramerization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-