Gene detail

Detailed information of SKAU_T00369940 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00369940	NUCLEAR RNA EXPORT FACTOR	CM056393.1	14992911	15024241	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00369940

ATGGAAGATGTAGAATCAGGATTGGGGTTGAAAGAGGGGACAGGGGAGGGAACGAGGCAAAGTCAAAGGAAAGACAATAATGCAGGAGACATAGGGGAGGAAAAGATAGACGCAGATGCTGCTGTGCTTACTTCTGTGAGTTGTGAGGCTAACTGGCGACGCCCCACTTCCGACGGAATGGGGAAAGTGCACAAGGCCAAGCCGAAACTGCGTTCTGCCAGGGCTATGTGTTTCTCCAGTCAGGAATCCACGCAGAGTCGAACAGAACCAGAGACAAAAGACAAGCTGGCCGCACCTTGGGAGGCTGCAGAGTCAGAGCCGGGGTCACGTGAGCGTCTGGATCCAGATCAGAACCGGGCGGCACATGTTAGAGGAGACGAGGCCGAGGAGGAAAAGAGAAATagaaagggggagagggaggagggtgagccAGAGAAGAGGGATGAAGAAGATGGGGGAGGAGGGCCCAGGAGGAGAATACCACATATGAGTGATAAGGTAAAGGAGGCGTGGAAGGTGAGGAGGTCGAGGCTCGGGGGGAGTATGGAAACGGATGGCGGAGAGGGGGTGTCAGCAGAGCGGGAGAGGCGCAAACGATGGACCAGGGCGGGCAGAGAACAGCAGGGGGCCGAATTGAAAGAGGAGAGTGAAACTGAGGCAGACAGAGAGCAGGATGGGCCCGGGGGGGCTGAAGTGGAGCGCGGGCCCGACCGTTTCTCAGAGGGCGGGATGGAGAGGGGTTCCATCAATCACGCCTTCCTCTCCCATATGATCATGCACTCCTCCGCctcttcatcctcttcctccgTCAACTACTCCTCTGCTGATAGTGACGAGGTCTTCAGTGAAAAAGAGGAGAccacgaccaggaggcagaagaTGAGGAAGAGTCATTCCTGGAAATCATTTATGGCCATGATGCAATGGTCAGTGCGTAGACAGAGTTCCTGGGTACAGCTGGCAGGACACCAAGGTAATTTCCAACCCAGTGAGGGAGGGCAGGTACTGAAGCGATACAATGCTGTGGAGAATTCCTGTTTGCAGGCTCTTATGAAGGACTCCTTGCGGCAGTTTGTCCCGCGCTACCATGGTTTGACCACCAGAGGGAGTGAGAGCTACATCCGATTAGAAGATTTGCTGAGTGGTTTGACCTGCCCTGTCATAATGGATTGCAAAATGGGTGTCAGAACCTACCTGGAAGAAGAGTTAGTTAGGGCACGCTCCAATCCTTGCGTGCGGACCGATATGTACCAGAAGATGGTGAAAGTAGACCCGGCAGCCCCTTCTGCAGAGGAGCACGCACAGGGCGGTGTCACCAAGTCACGCTATATGCAGTGGAGGGACAGCATGAGCTCCACTTCAACACTGGGCTTCAGGATTGAAGGGATTACAGTGGAGGATGGAAGAATTCTGCGGGACTTCAAGAAGACTCGAACCTCGGCCCAGGTCACCGacgccctcctttccttcaccAAGAGGCAGTCACACATCCTGGAAGCATACCTATCCAGACTCCAGGCTCTCAACGAAGCTGTGAAAGAGTCTGAGTTTTTCCAATCCCACGAGATAATTGGCAGCTCTCTTCTCTTTGTCCATGACCGCACCAACAAGGCAAATATATGGATGATTGATTTTGGAAAGACGACCCCTACCCCTTCGGGTGTACATTTGCAACACAACATTCCTTGGGTGGAAGGCAACCGGGAAGATGGcgACGCCCCATCTGCAGGCGTCCGATTTCTGTTTTTTAAGCTGGTGGTGGATTTGTACATAATGGCGACGGCAGACGATGCCCGCTACTACAACGATCATGATGGCGTCGTCTTCCAGAGAGAGGTCAGGAGTGATGGCTGGCCAATTAGAGAGCACGATGATAGGGTTGGGGGCCCCCAGTTCCGCAACCGCAAAGGGCGGGGACCCTTCCGGGGCCGTATGTACAGTGAACAGCCGATGAGGCAGCGGCATCGTGGTGGTCCGGCAGGCGGGGTTCCGGGTCCCAGGGCCAGGTTTGATGATGACGACGGAGACGTGGCGATGAATGACGGGAACTCACAAGATGGAAGTTCACAGCGCAGATTCAACCCATACGGACGGCAAAATCGCAGGGGTGATGGCCGGTTTGACCGGGAAAGACGTGGTGGGGGAGGTGGAGGCCacagaggagggggaggagggggaggaggaggaggaggaggagggggccgCAAAACCTGGTTCAGAATGACTATTCCCCACGGGAAGAAATATGAAAAGAAATGGCTTCTCACTGCGCTGCAAAACCTCTGCTCTGTGCCTTTCACTCCCATACAGTACCAAACGGAGGGAAACAGGGCACAGTTTTTCATTGATGATGCTTCCACTGCCAACGCTCTGAGCAAAGTATCGCGCAAGATCACAGACACCGACGGCTACAAGGTGACTGTATTGATGAACCCCTGCGTCCCTCCCGCCTCCCTTCAGAACGAACTGAAGCCAGAGGACCTAGACCACCTAAAGCAATGTATGGCCAAGCGATTTGATGGCTCGCAGCAAGCACTTGACTTGAACAGCATTCGGACAGACCCAGACCTGGTTTCACAGAACATCGATGTGATTCTGAACAGGAAGAGCTGTATGCAGGCTGTCATCAAAATCATTGAGGAGAATATCCCTGGGCTGACTTGTCTAAACCTGAGCAACAACAGGCTTTATAAGCTAGAGGATCTGGCAGAGCTGGTCAATACGGTGCCAAACCTGAAGACACTCAATCTCTCCAACAACGAGCTGAAGAATGAGCGAGAGCTGGACAAAGTGAAGGCCTTCAAGCTAGTGGAGCTGTGGCTGGACAGGAACCCGCTCTGTGATCATTTCAAGGACCAGGCCACCTACATCAGCGCTGTCCGAGAACGGTTCCCACGGTTACTCAAGCTGGATGGCCATGATCTCCCGCCGCCCATAGGATTCGATGTGGAAGCGCCCACAACTCTGCCCCCCTGCAAGGGAAGTTACTTTGTTTCAGACGAAATCAAGAGCCTCATATTACGATTCCTACAACAATACTACAGTGTGTATGACTCGAGCGACAGGCAGCCTCTTTTGGACGCCTACCATGACGGAGCTTCCTTCTCCCTCAGCATACCCTTCTCTGGGCAGAACCCCTCCAGGTGCAGTCTAGGGGAGTATCACAAGGACAGTCGTAACATCAAGAAGCTTAAAGATCCAACCACGCGATTCCGCCTGTTGAAGCACACACGGTTGAACGTGGTCGCCTTCTTAAATGAACTGCCGAAGACCCAGCATGACATCGCTTCCTTCAACATTGATGTGAACACATACACTAACACGCTGCTCTCGTTCACGGTCAGTGGAATGTTCAAAGAAGTGGATGGTAAATCCAGAGACCTGGTCAGAGCGTTTTCTCGAGTCTTTGTGGCAGTGCCGGCTGGTAACACTGGTTTGTGCATAGTGAACGACGAACTGTTTGTGCGGAACGCCACAACGGAGGAGATCCGGCGAGCCTTTGCAGCCCCCGCTCCGACGCCCTCCAGCAGCCCCGTGCCGACCCTGTCTGCATCCCAGCAGGAAATGCTAACCGCCTTCTCGCTGAAATCCGGGATGAACCTCGAGTGGTCACAAAAGTGTCTACAGGACAATGAGTGGGATTTCAATAAAGCCGCTCAAATCTTCACGCAGCTAAAGGCCGTCGGAAAGATCCCAGACGTTGCCTTCTTGAAGTGA

Transcript

SKAU_T00369940

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02136	NTF2	Nuclear transport factor 2 (NTF2) domain	Domain	Interproscan
PF03770	IPK	Inositol polyphosphate kinase	Family	Interproscan
PF03943	TAP_C	TAP C-terminal domain	Domain	Interproscan
PF09162	Tap-RNA_bind	Tap, RNA-binding	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR002075	Domain	Nuclear transport factor 2 domain	Interproscan
IPR005522	Family	Inositol polyphosphate kinase	Interproscan
IPR005637	Domain	TAP C-terminal (TAP-C) domain	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR015245	Domain	Nuclear RNA export factor Tap, RNA-binding domain	Interproscan
IPR018222	Domain	Nuclear transport factor 2, eukaryote	Interproscan
IPR030217	Family	Nuclear RNA export factor	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR032710	Homologous_superfamily	NTF2-like domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR038286	Homologous_superfamily	Inositol polyphosphate kinase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10662	NUCLEAR RNA EXPORT FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006406	Biological Process	mRNA export from nucleus	Interproscan
GO:0016301	Molecular Function	kinase activity	Interproscan
GO:0016973	Biological Process	poly(A)+ mRNA export from nucleus	Interproscan
GO:0032958	Biological Process	inositol phosphate biosynthetic process	Interproscan
GO:0051028	Biological Process	mRNA transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-