Gene detail

Detailed information of SKAU_T00364310 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00364310	CADHERIN-23	CM056393.1	646687	687186	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00364310

ATGCTGGAACCGGACCCCCATCCCGTTCCCCCATTTCCACGGCAACAGGCTGACCAGAGATGCTCCTGCTGTGTGTCACTCTCCCTGTGTTGGGCCAGGGCAGAATCCGAGGAGCAGCTGCCCCCAGGTACAGTCTTACTGATGAAGGTAACGGCAACTGACCCAGATAAAGATGCCGATCAGGAGTCCCTCAGGTATTCTCTCCACGGTCAGGGAGCAGAGAGCGAATTCATCATTGATGAGGTGACGGGGAAGATCTACGCTCAAAAGACCCTGAACCGGGAGGAGCGGGCCGTCTGGAGGTTCGTGGTGCTGGCCACGGACGAGGCCGGCGAGGGCCTGACCGGCTTCACCGACGTGATCATCAACGTGTGGGACATCAACGACAACGCGCCCGTCTTCACCTGCATGCCGGACAGCTGCGAGGGCCACGTCCTAGAAAACTCGCCCCCGGACACCTCGGTCATGGAGATGACGGCCACCGACATGGATGACCCCACGGTGGGCCAGAACGCCGTGCTCACCTACAGGATCATGGGAAACGCCCGGGGCGGGGCCAGCGCGGACCTGTTCAGCATCAACGCCAGCACGGGCACCATCTCGGTGGCGCAGGCGGGACTGGACCGGGAGCGGGTGGAGACGTACCTGCTGGTGGTGGAGGCCAAAGACGGCGGGGGGATGGCGGGAACGGGCACCGCCACCATCCGGGTGACGGACGTCAACGACCACGCGCCTCGATTCGCCGAGAGCTCGTGCGGGGCCCGCGTCTCGGAGAGCAGCGAGCCCAACTCGGCCGTGCTGGAGCTGTTGGCCGTGGACGCCGACGTCGGCGAGAACGCCCAGCTGACCTTCAGCATCGTCGGCGGCGACCCGGAGCAGAAGTTCTACGTGGTGAGCCACAGGCAGGAGCAGCGAGGCACCGTCCGGCTGAAGAAGAGGCTGGACTACGAGAAGGCCACCGAGCAGAGGTTCAACCTCACGCTCAAGGTGGAGGACTTAGACTTCTCCAGCCTGGTGCACTGCCTCATCGAGGTGGAGGACCACAACGACCACGCCCCCGTCTTCGTGCCCCAATTCTACGCCCTGCCGCCCTTCCCCGAGGACGTCCCCGTGGGAACCAGCGTGATCAAGATGGCGGCCAACGACGCCGACTCGGGGAAGAACCGGGACATCGTGTACAGCATCTCGGAGGAGACGGACCCGCGTGGGCAGTTCTCCGTGGACGACGGTGGCCTCGTCTCCGTGACCAGGCCGCTGGACAGGGAGACAGCGGTGTCGTACACTCTGGTCATCTTTGCGACCGATCAGGGAAGCCCGGCGCAGACCGGCAGTGCCACAGTCCAGCTGACCCTGCTGGATGTCAACGACAACGGGCCGGAGTTGGAGGCGGCCTACATGCCCGTGGTGTGGGAAAACACGGCCGGTCCCCAGGTGGTGTGGCTCAACCAGACCTCCACCCTCCTGCATGCGGTGGACCGGGACTCCCCCGAAAACGGACCCCCGTTCTCCTTCTCCATGCCCCCCGAGCTCCGGCACAGCCGCGACTTCCACCTGCAGGACAACGGCAACGACACGGCGACCGTCACCGCGCTGCGCACCTTCGACCGCGAGAGGCAGAAGGAGTTCCGTCTGCCCGTTATCATGAGGGACAGCGGGAAGCCCAGCAGGACCGTCACCAACACGCTCACCATCACCATCGGAGACAAGAATGACCACGCTCACCTGGCCGGGGAAAAGAGCATATACGTCAACAGTCACAGAgGAATGATGGCGACCACGGTCCTGGGGAAGGTGTACGCCCCCGATCCCGACGACTGGGACAACAAGACGTACGTCTTCGAGGGACACGTGCCCAActATTTTGTCCTGAACAAAAGGACTGGCTTTCTGATTATCAAGGAGAACGCCCCGACGGGAAGCTACGAGTTCAATGTGCGGGTGTCAGATGGGGTGTGGCCAGACGTGGTTTCCAAGGTGACCGTGCGCATCAAAGAACTGCAAGAGGAGGCCATCTACAGCTCCGCCTCACTCCGCATGGCAGACGTCACGGCCGCGGAGTTCCTCGCGCGCCAGGGCGGCGGGCGGAGCCGGCAGGAGCTGCTCCGGGACTTCCTGTCGGAAATGCTGGCGGTCGGCCCCGGCGACGTCAACGTCTTCGGCCTGCAGGACGTGCGGGAGAGGACGCTGGACGTGCGCTTCTCCGTGAGGGGCGCCCCCTTCGTGAGGCCTGAGAAACTGCACGGCTACCTGGCGGCGCACAAACAGAAGcTCGAGTCCTTCCTCCAGGTGAACGTCAGTCAGGTGCACGTGGACGAGTGCGCCGTGACCGACTGCGGGGGGCAGCGGGGGCTGCTCCAATCAGCTGACGGTCGGAGGCGCGCCCACCGTGGTGGATTCTGGGAGCACGTCCCTGGTGTCGGTGACTGTGACCACCGCGGCCGTGTGCGGCTGCCCTGGGCGGGACCACCTGCACCGGGCCTGCTCCTCTTACCCCCCAAAGCCCCTGCCACAATGGAGGGGTCTGCATCGACAGCAAGGGCGGATACAGGCCTGCCCCTAGGCCACGCCTCCTCCTTCCACCCCGCCCCAACAGGGAGCCTAAAGAGTTGGAGCAGGAGGGAATGCCAGGAAGCAGTCACCCAGCCGCGCTGGAACCAGTCTCTGCTGCGCTGCGCTTGTTTATTGAATAAAAGTTTGGGAGAGACCTCGCTAATGACCGCAACCTTTGGTTCCGGAGGTTTCTGTGCGATTCCCCACTTGAGGCAGAGACGGCTCCGGACGGACCGGACGCCGGGTACGGCTCCTTCCACCAGCAGTACTGGCTGGACGGCCGTATCGTGGCGGTGGGGCGTGATCGATGTCCTCCCCACCTGCGTCTCCTCTGTGTACCTGTACTACCACCCCGACTTCTCCGCCCTGTCCCTCGGCTCCTACTCTGCACTCAGACTCACACCCCATCAGAGGGGCCCGACCCTGAGCCACAGAGGCCTGCAAATCAAGCAGAGCCTCGTGTGTGAcctactgtag

Transcript

SKAU_T00364310

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00028	Cadherin	Cadherin domain	Domain	Interproscan
PF04377	ATE_C	Arginine-tRNA-protein transferase, C terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002126	Domain	Cadherin-like	Interproscan
IPR007472	Domain	N-end rule aminoacyl transferase, C-terminal	Interproscan
IPR015919	Homologous_superfamily	Cadherin-like superfamily	Interproscan
IPR020894	Conserved_site	Cadherin conserved site	Interproscan
IPR039808	Family	Cadherin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24027	CADHERIN-23	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000902	Biological Process	cell morphogenesis	Interproscan
GO:0004057	Molecular Function	arginyl-tRNA--protein transferase activity	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0005912	Cellular Component	adherens junction	Interproscan
GO:0007043	Biological Process	cell-cell junction assembly	Interproscan
GO:0007155	Biological Process	cell adhesion	Interproscan
GO:0007156	Biological Process	homophilic cell adhesion via plasma membrane adhesion molecules	Interproscan
GO:0007275	Biological Process	multicellular organism development	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016339	Biological Process	calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules	Interproscan
GO:0016342	Cellular Component	catenin complex	Interproscan
GO:0016598	Biological Process	protein arginylation	Interproscan
GO:0034332	Biological Process	adherens junction organization	Interproscan
GO:0044331	Biological Process	cell-cell adhesion mediated by cadherin	Interproscan
GO:0045296	Molecular Function	cadherin binding	Interproscan
GO:0098609	Biological Process	cell-cell adhesion	Interproscan
GO:0098742	Biological Process	cell-cell adhesion via plasma-membrane adhesion molecules	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-