Gene detail

Detailed information of SKAU_T00361260 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00361260	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2, MITOCHONDRIAL	CM056392.1	23992203	24002347	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00361260

TAAGAACACGATAATCATTTAGTGGTTTTAAAATTGTACTCTTTTGCACATTGGTACAGTCAGTCAGGGGGCAATATGGCGTTTAGAGGACTGACCGGCTGTGTCCCAATTTTACTGCGTAATGTCAAAACAAAAGGAGTAATATGTGCTAACGTAACTAAACAGTCGGATTGCTGGACATGCAGAGTAGGAGCAAAAAGGCATCTTCTGTCAGAAGATATCATTAGACTACAAGAGTTCCAGCAGAGAAAACTTGCAGTTTCTCATCAAATGTATGGAGGAAAAGAAGAATATTTCCAAAAGTTCGACCAAAAACTTCAAAAAAAAGAGCTTGTCCTGAAAGATGAATTAAAATTACTCCTGCACTTATGCCAAACCCCAGATGACGTGGTCACTGCCAGGAGTGCCATTTACAGGTACCATGAAGAGAATTTCAACATGGCCTTTGGAGAGTTCAAGTTCGGTCCCCTATTTATGAGGCTGTGTTATGAACTGGGCCTAGAGGAGATTGCAGCAAACGCAATCAAGGACAAGACCCTGAAAGGATTCTTCTCAGACTCAACTTCCTTCAACATTGCCATGGACATGCTGTTTATGAAAGGATATTATGACAGTGCCCTGGAAGTGCTCATAAGCATGATGGAACAGGGAGTGCCGCTTAGCAAGGAAACCTTCACTGTGGCTTTTGGTGTCTGCTACAAACTGAACACCCCGCAGTCATATAAGATCTGTAGCGCTCTGTTAGAGGAGGCACAGATTAAAGGCCAACGTGTTCCCAGACAAGCGTACTGTTTTGCGGTGGCGCAGGCTCTCAAACAGAAGGATCCGGAGAGAGCTGAATCCATCTACACACAGATAATGAGCCCTGACAGTCAAATATGCCAGAATCTTAAAGTGCTCATGCTGGCAATGGCTGGAGCAGTGAACGATATTCTCTCCATCTTGGCATTGGCGTTGATGCCCAACAGCCCCACATTTGTGAAGAAGCCTGAATTTTCTCAGGAAGTGGTGGACGCGCTGCGGCTTCAGACGGCAGCGAGCCCCCTGTTGCGTGAGCGGGTGGAGCAGGCGGTGGCCAAGCTGCAGATGTCCGGCCAGGTGACCCCCCTCAGCCTGGACCGCATGCTGTGTCTCACGCCCAGCGGGAGGAGGAAGCCGACCGGCCTGTCACTGGAGCAGAGGAAGAGCAGCCGCAGAACGTTCAGGTCGCTGCAGTCCACCCTGCTGATCGAGTGACCGTCCCCAGCCCTACCCTGCCGAACTGTGACTGAGGAGGCCCTGCCTCAGAGTAACTGTCCCCAGCCCTACCCTACCGACCTGTGACTGAGGAGGCCCTGCCTCAGAGTAACTGTCCCCAGCCCTACCCTACCGACCTGTGACTGAGGAGGCCCTGCCTAACTCTCCTCTTCCAGCTGGCGGAGTAGCCCTCAGTATCCCAGTTTTACCGCACCGGTCAGACAGCGGTACCTACAGACTTTATGACCGTCACTCCGTCCACCCTGCTGCCACTGATCTGAGACCCAGACACTTCCGCTTTAGTGATCTTCAACAGGACACAAGACGGCAGCAGAATGCTGGAGAGGAAGTAGATTAATAGTCTGAGAAGGACGATCCAGAGAATTGAGCCTCATGATTCACATTCTCTTTTAAGAGGGTTGGTCCTTAAGCAATGATATCGACCTTGTCTTgtcctccatttaaaaaaaaccaaCAACATTTGATTGCTGTTAATTTACATATTGTTTTATATGCAGGACTACTTTACTTGGAACCCCTGCGGAACCCTTGAAATATCTTTACTTGGAGTGCAATCATAGATTGCTCCAAATGAAACATGACAATTTTCAGTAAAACAATATGACGCATTGGCAGGGATCATCAAATCAAAtccgtatttatttatatagcgcatttcacagcTAGTTGTCACGCTTCACAGataaaacccagcctaaacccccacaagagcgagccaaaggcaacagtgccaaggaaaaactccctgctgatGCACTTCAAAGGTAGATAATTGCATCTTTGTTGGAAAAGAAATCCTTATAGAATTGCTCTATATCATATCATCCGTTTCCACTCATACCTGTCATAATTCAGTCCTCAGTCTTAGTACCTGAAATTTaagctgattaaaaaaaaaaaagattaaagaaGTTTACCCCACTTGGTTGCTTTTAAAATTCTTCATTTGTTCTATAGAAGTCAGTTTAACATTAAAGatatcagttttatttatttattattattttctgagGGGGGGGTAATTTGATCCTCCTATTGTGTTTGGGGTCAGTTTGACCctattcagtgtttg

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10037	MRP-S27	Mitochondrial 28S ribosomal protein S27	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002885	Repeat	Pentatricopeptide repeat	Interproscan
IPR011990	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR034629	Family	Pentatricopeptide repeat-containing protein 2, mitochondrial	Interproscan
IPR034913	Family	mS27/PTCD2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14700	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0007005	Biological Process	mitochondrion organization	Interproscan
GO:0007275	Biological Process	multicellular organism development	Interproscan
GO:0050684	Biological Process	regulation of mRNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-