Gene detail

Detailed information of SKAU_T00360830 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00360830	P300 TRANSCRIPTIONAL COFACTOR JMY-RELATED	CM056392.1	22450992	22491836	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00360830

ATGTCATTCACAATGGAAGACACTTTGGAGTCGGGGTGGGTTGCCGTTAGATCAAATGTTTTTGATGAAAAAGAAAAGCACAAGTTCGTTTTCATTGTCGCTTGGAATGAGGTGGAAGGGAAGTTTGCCATCACATGCCACAACAGAACGGCGCAGAGAAGGAGTGTTGCTAGGGAATCAGTCGCAGAGGGTACGGCCACTCTCAAGCCCACTGAATCGATCCCGCCAGGGGCAGACAAGGAGAGTAAACCCCAAACTTCCGAAAGTCCCGTCAAGGGAAAGATTGAAAGTGACAGCCCGACAAAGAAAATAGGAGGTACAATAAAAGCAGAACACTGCGCACAGCTTTCAGTGCGCGGAAAAGATTCAGGACATTCAAGTCCAGGTAAGGGCGTCAATAAAGCAGTTGGATCACGGGGCAGAGGGCCAACTATAGCAATGGACATTGAAGTCTTGGACCCCACTGTTATCCAAGGGGAGAACCGCTCTCCTGAAGTCGAATCCGCTGATTCGGAGGATTCGGAGAGCAACGTCAGAGAGCATTGCAGCTGGGCCGGACTCTTTTCTTTTCAAGACATGCGGGCCGTCCACCTGCAACTGTGCTCGGTCAACTCGGACCTGGAGCCATGTTTGCCCCCCTTCCCCGAAGAGCCGTCGGGAATGTGGACTGTGTTGTTTGGTCCTCAGGACGTCACTCAGAAAGAGACTGACGCCCTGTGCTACCAGCTGCAGGTTTACCTGGGCCATGCACTTGACACTTGTGGATGGAAGATTCTTTCCGAGGTGCTTTTCACAGAGAGCGACGACCCTGAGGAGTACTATGAGAGTTTGAGCGAACTGCGACAAAAGGGGTACGAGGAGGCGCTACAAAGAGCCAAGAAGCGACTTCACGAGCTCCTGGAGAAGCACAAGGCCACGGAGAGCATGGTGGAGCTGCTGGAGATCTACCAGGAGGAGGACGAGGCCTACGAGGAGCTGGCGGAGGCCACCACCCAGCTCTACCAGTACCTGCTGCAGCCCTTCAGGGACATGAGGGAGCTGGCCATGCTGCGCAGGCAGCAGATCAAGATCTCCGTGGAAAACGATTACCTGGGCCCGCGCAGGATCGACGCCCTGCAGAAGGAGGACGCCGACTGGCAGAGGAAGGCCCACGCGGCGGTCCTCTCCATCCAGGACCTCACCGTCAAGTACTTTGAGATCACTGCGCGGGCGCAGAAAGTGGCCTACGAGCGCATGCGTAGCGACCAGAAGAAGTTCGGCAAGGCGGCGTGGGCAGCGGCGCTGGAGCGCATGGAGAAGCTGCAGTACTCCGTATCCAAGGAGACGCTGCAGCTCATGAGGGCCAGAGAGATCTGCCTGGAGCAGAGGAAGCGCGCGCTGCGGGAGgagATGCAGGACCTGCAGGCCGGCGAGGGTGCCATGTCACGGCTGGACCAGCTGGAGGCGCTGTACTACGAGCTGCAGCTGCAGCTGTACGAGATCCAGTTTGAGGTCCTGAGGTACGAGGAGCTCCTGCTAACCGCGCAGCTGGAGACCATCAAGAGGCAGGTGACAGagaggcaGGATGAAGTGGTGTACTATGACACCTATGAGAGCATGGACGCTATGCAGGCCACCGTGGACATGGCTTCCTCCGTGTTCCCGCGGCGGGAGGAGCTCGCCAAGCTGCAGCAGAGGGTGCGACAGCTGGAGGCCAGGAGGGGGCGCATCACCGCGAAGAAAGCCTACCTCAGAAACAAAAAGGAAATATGCATCTTCAATCACAATGAGAAAATGCAGCACCGCCAAGGCAGTCAAGAGGACCACAAATCCCATCATGCCTTGCAACAGCAAAGTGAGCAGCaggaagaggagaagaggagCACTCTGGTCAGCCAAGAGAGGCAGAGAACTCTGGACAGGCTGCGCAGCTTCAAGCAGCGGTACCCTGGTCAAGTTATACTGAAGTCCACCAGGCTCCGGTTGGCATACGCCCGAAGGAAAGATGGCACCGTCTTCGCCCCTAGTGTGACCCTGGACCAGCGGCGGTCACTGGAGGCGGGCGCGCTGGCGGAAGAGGGTGGGGTGGCCCCCGCATTACCGGAATGTTCCGCCCGCACCGCTGCGGCTGGAAAACTTGAAAGCGTGTCCTTACCTCCGGGGGGTGCTGCTGCTCCTCCCGTCTCCCTACCTCCAGAGAGAGACCTCTCAGTGCTCAGCTCCCCTGTGACCCCCGCGCACCCACCCCCGCCTCCTCCgccaccccctcctccacccccgccGTCCGCCGTGGAGTTCGTCCCCGGTGCGGCTCCGGGGGGTCCACAAAGCCCGGTCCGGCAGGTCAAGGTGGAGGCGAGCGAGGTCCAAAGCGTCTCCCTCGGCCCGTTCTCCGGGCGGTTCTTCGACAGCAGCCAGCTGGTGAACGCCAGGAAGAAGCTGAAGAAGACCATGGCCCTGGAGGCTTCCCAGAGGAGGAGGGCGAGCTCGCCGATGGACGAGGTACTGGCCTCCCTCAAGCGGGGCAGCTTCCACCTGCGCAAGGCCGAGCTCCGGGTCCTGCGGCCCGACCCGGACCAGGACGACAGCGGCAACATCCTGGCGCAGATCCGCAAGGGCGTCAAGCTGAAGAGGGTGCAGCGGCGGGAGCTGCGCGACTCCGCGGGCGCGCTGCGCGACTCGGCCGACCCGCTCACCCGCAGCATCCACGAGGCGCTGCGGCGCATCAAGGAGGCGTCGCCCGAGTCCGACGACGAGGACGACGGGCTGCACTGCTCCGACTGGGAGAGCTAG

Transcript

SKAU_T00360830

TCGGATGAAAACATTGTTATGGAGTGATGTGGAGCGTAATCTGTAACCGAGAGAAAGGAGATTAGGCGATGCGCTTTCAGGGAGAAATCAGGACGAGTAACTTATCGATCAACATATGTCGAACAGTAAGACTATTTAAAATTGGTTTATGGACTTTTTGAAAATCATGCTTCTTAAGTTTTTTAAATATATCGCCAGCTAAGCGAGCTGTAGCCTGTCCAATATATAGCTATTCAAACGGATGCTAGGCTACGATCGAGGGCAAAAAACAGCACATTTGACAGCAGACCTGCTTTGCTTACCGTCTCACTCCGCTTGCTTGTAAACAGATACTCACACGTGACGATGTGAACGGCTCTGCATTGTCTGGTAGTGGAGATGCACAAACAGGGGCCTCCACAATCGAGTGTCAGGTGAGGGAAGAAGGTGGAGAAGACTGATGGCAAATGCAGGACCAGTACAAAATACCCGTTTTTAGTGGCAGGTTATAAAGATGCAGAATGGCAGTTTTCCTGATCACTTTATGATATCGCTTTTAGTCAGCATTAAAATCTTTCTGGAAACAGCCTACTGTCTCGTGAAACTAGCTGGCTGCGCAAGCTAATTTGTTTTTCATCATCGGACGGGTGAAAGCATATAGGCTATTCGTAGTTTGAAAGATGTCATTCACAATGGAAGACACTTTGGAGTCGGGGTGGGTTGCCGTTAGATCAAATGTTTTTGATGAAAAAGAAAAGCACAAGTTCGTTTTCATTGTCGCTTGGAATGAGGTGGAAGGGAAGTTTGCCATCACATGCCACAACAGAACGGCGCAGAGAAGGAGTGTTGCTAGGGAATCAGTCGCAGAGGGTACGGCCACTCTCAAGCCCACTGAATCGATCCCGCCAGGGGCAGACAAGGAGAGTAAACCCCAAACTTCCGAAAGTCCCGTCAAGGGAAAGATTGAAAGTGACAGCCCGACAAAGAAAATAGGAGGTACAATAAAAGCAGAACACTGCGCACAGCTTTCAGTGCGCGGAAAAGATTCAGGACATTCAAGTCCAGGTAAGGGCGTCAATAAAGCAGTTGGATCACGGGGCAGAGGGCCAACTATAGCAATGGACATTGAAGTCTTGGACCCCACTGTTATCCAAGGGGAGAACCGCTCTCCTGAAGTCGAATCCGCTGATTCGGAGGATTCGGAGAGCAACGTCAGAGAGCATTGCAGCTGGGCCGGACTCTTTTCTTTTCAAGACATGCGGGCCGTCCACCTGCAACTGTGCTCGGTCAACTCGGACCTGGAGCCATGTTTGCCCCCCTTCCCCGAAGAGCCGTCGGGAATGTGGACTGTGTTGTTTGGTCCTCAGGACGTCACTCAGAAAGAGACTGACGCCCTGTGCTACCAGCTGCAGGTTTACCTGGGCCATGCACTTGACACTTGTGGATGGAAGATTCTTTCCGAGGTGCTTTTCACAGAGAGCGACGACCCTGAGGAGTACTATGAGAGTTTGAGCGAACTGCGACAAAAGGGGTACGAGGAGGCGCTACAAAGAGCCAAGAAGCGACTTCACGAGCTCCTGGAGAAGCACAAGGCCACGGAGAGCATGGTGGAGCTGCTGGAGATCTACCAGGAGGAGGACGAGGCCTACGAGGAGCTGGCGGAGGCCACCACCCAGCTCTACCAGTACCTGCTGCAGCCCTTCAGGGACATGAGGGAGCTGGCCATGCTGCGCAGGCAGCAGATCAAGATCTCCGTGGAAAACGATTACCTGGGCCCGCGCAGGATCGACGCCCTGCAGAAGGAGGACGCCGACTGGCAGAGGAAGGCCCACGCGGCGGTCCTCTCCATCCAGGACCTCACCGTCAAGTACTTTGAGATCACTGCGCGGGCGCAGAAAGTGGCCTACGAGCGCATGCGTAGCGACCAGAAGAAGTTCGGCAAGGCGGCGTGGGCAGCGGCGCTGGAGCGCATGGAGAAGCTGCAGTACTCCGTATCCAAGGAGACGCTGCAGCTCATGAGGGCCAGAGAGATCTGCCTGGAGCAGAGGAAGCGCGCGCTGCGGGAGgagATGCAGGACCTGCAGGCCGGCGAGGGTGCCATGTCACGGCTGGACCAGCTGGAGGCGCTGTACTACGAGCTGCAGCTGCAGCTGTACGAGATCCAGTTTGAGGTCCTGAGGTACGAGGAGCTCCTGCTAACCGCGCAGCTGGAGACCATCAAGAGGCAGGTGACAGagaggcaGGATGAAGTGGTGTACTATGACACCTATGAGAGCATGGACGCTATGCAGGCCACCGTGGACATGGCTTCCTCCGTGTTCCCGCGGCGGGAGGAGCTCGCCAAGCTGCAGCAGAGGGTGCGACAGCTGGAGGCCAGGAGGGGGCGCATCACCGCGAAGAAAGCCTACCTCAGAAACAAAAAGGAAATATGCATCTTCAATCACAATGAGAAAATGCAGCACCGCCAAGGCAGTCAAGAGGACCACAAATCCCATCATGCCTTGCAACAGCAAAGTGAGCAGCaggaagaggagaagaggagCACTCTGGTCAGCCAAGAGAGGCAGAGAACTCTGGACAGGCTGCGCAGCTTCAAGCAGCGGTACCCTGGTCAAGTTATACTGAAGTCCACCAGGCTCCGGTTGGCATACGCCCGAAGGAAAGATGGCACCGTCTTCGCCCCTAGTGTGACCCTGGACCAGCGGCGGTCACTGGAGGCGGGCGCGCTGGCGGAAGAGGGTGGGGTGGCCCCCGCATTACCGGAATGTTCCGCCCGCACCGCTGCGGCTGGAAAACTTGAAAGCGTGTCCTTACCTCCGGGGGGTGCTGCTGCTCCTCCCGTCTCCCTACCTCCAGAGAGAGACCTCTCAGTGCTCAGCTCCCCTGTGACCCCCGCGCACCCACCCCCGCCTCCTCCgccaccccctcctccacccccgccGTCCGCCGTGGAGTTCGTCCCCGGTGCGGCTCCGGGGGGTCCACAAAGCCCGGTCCGGCAGGTCAAGGTGGAGGCGAGCGAGGTCCAAAGCGTCTCCCTCGGCCCGTTCTCCGGGCGGTTCTTCGACAGCAGCCAGCTGGTGAACGCCAGGAAGAAGCTGAAGAAGACCATGGCCCTGGAGGCTTCCCAGAGGAGGAGGGCGAGCTCGCCGATGGACGAGGTACTGGCCTCCCTCAAGCGGGGCAGCTTCCACCTGCGCAAGGCCGAGCTCCGGGTCCTGCGGCCCGACCCGGACCAGGACGACAGCGGCAACATCCTGGCGCAGATCCGCAAGGGCGTCAAGCTGAAGAGGGTGCAGCGGCGGGAGCTGCGCGACTCCGCGGGCGCGCTGCGCGACTCGGCCGACCCGCTCACCCGCAGCATCCACGAGGCGCTGCGGCGCATCAAGGAGGCGTCGCCCGAGTCCGACGACGAGGACGACGGGCTGCACTGCTCCGACTGGGAGAGCTAGGCCCCTCCCACTCTGCTCCGACTGGGAGAGCTAGGCCCTCCCACTCTGCTCCGACTGGGAGAGCTAGGCCCCTCCCACTCTGCTCCGACTGGGAGAGCTAGGCCCCTCCCACTCTGCTCCGACTGGGAGAGCTAGGCCCTCCCACTCTGCCCTGACTGGGAGAGCTAGGCCCCTCCCACTCTGCTCTGATTGGGAGAGCTAGGCCCCTCCCACTCTGCTCCGACTGGGAGAGCTAGGCCCCTCCCACTCTGCCCCGGCCCTCAGATTTTTCTCAGAATTATGACTACATAAACCAAccgccccccaaaaaaaacacaaacaaacaacaaaaacagaACGACAAACACAGATACAAAGACAAAGCCTGCGCTGTTGCGCTCGCTGCACATTCTGTCGGTCTCATTTTTTTTTGGCTTTGAGGCGAAGCCTCGCCAGACATACTGACCCTTTCGGTCCCGTCGATTACAACGAAGCTGCTGGTCCTGTACATTGAAGGAGCCTCTGAGTACATTTTGCGACATTTTCCGTCACGTTTTATCCCTCGTTCGGGGCCCGGTGCGAGGCATCCCAATGACAGCCGCAGCCACAGCTGAGGGGCGCTGAAGCACAGGGTGAGAGTGAGTgacccccatacccccccccccccacacacacccatccGCTCCCTGCATCTAATCTCATGCAGTCCCAGACCACCGCCCGCTGAGGTTTTTTCCATTCAATTCTTTCCGGTTCTCTGTGGGATCAGATACAGATTCTGTTAAGGTGGGGTACAGCCGGGGCAGCGGTAGCTGTGAATTCACTAACAGGGCAAATCATTCTCTTTAGTTCCACGTGTGCGTTGCTGTACATAATCAAAGCCAAAAAAGAGAGCGTAGCTCCTCTCCAGTTGCAGATGTTAAAATCTTACAGCGTGTTTGGCTTCGGACCTCAGTCCAGCTGCTGTCATAGTCATGACATTTTTAAAGTTGAGCGATCATTGAAATGAAAGGAACTGATCACTCGGCATAGGAGAAAAGGTTGCAGGCTCCAAGGCACGAGTCCTGCACGTTCAGTTTGCTGTGTTCATTAGACCCAAGTCTTCACTACCTTTTATATCTCTGCTCCTGGTGCCGCATTCACCATCTCAAGCTCCTGTATAGACACTTGttttgtctctgtctttctctctctctctctcagaaccaCAGGCCTGGaggctctcttctctctctctttcactacctctccttctctctactctctctctcactctctcttgagAACAAAGGAGAGCAAAGGAGCGTGACTTCCACGCATAGGTAAAAATCCACCAATCCACAGAATGGAATATCTGAGTAATGAGGATGACTGTTAGCAATGCTGTGAATGGCTTCAGCAAACTGTCTCCTGTGCTTATTTATTTGTAGTCCCCCTGCAGTCTTTTCATTGTTTTCAGACGTTTCAGACATTAAAAACCGATTGTTATACCCAAAGCATGCCAGGTAGTCCTTGGACACCAGGCTTGGGCTGACGGAAGGCTTGGACAGATCACTGGTACTGGTCTCCGGGCCTTCAAAAGTAGAGCACACAGATACCTCCTGACCACAACCCTCATTGACTGTTGAGCTGCAGTGAACCATATGATTGGCCAACTGGATGAAAAT

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15871	JMY	Junction-mediating and -regulatory protein	Family	Interproscan
PF15920	WHAMM-JMY_N	N-terminal of Junction-mediating and WASP homolog-associated	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003124	Domain	WH2 domain	Interproscan
IPR031738	Domain	JMY/WHAMM, middle domain	Interproscan
IPR031808	Domain	JMY/WHAMM, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23330	P300 TRANSCRIPTIONAL COFACTOR JMY-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003713	Molecular Function	transcription coactivator activity	Interproscan
GO:0003779	Molecular Function	actin binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0034314	Biological Process	Arp2/3 complex-mediated actin nucleation	Interproscan
GO:0043065	Biological Process	positive regulation of apoptotic process	Interproscan
GO:0051091	Biological Process	positive regulation of DNA-binding transcription factor activity	Interproscan
GO:0070060	Biological Process	'de novo' actin filament nucleation	Interproscan
GO:0071933	Molecular Function	Arp2/3 complex binding	Interproscan
GO:0072332	Biological Process	intrinsic apoptotic signaling pathway by p53 class mediator	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-