Gene detail

Detailed information of SKAU_T00360710 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00360710	HELICASE WITH DEATH DOMAIN-RELATED	CM056392.1	22098419	22112677	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00360710

ATGGCGGAGAAGAACATTCTACAGAAGTATCAGTCATATATTACACAGATTATCCAGCCATCGTGTATACTACCCCTGGTTGACTTTTTGAATGACTATGCGGAGCAGATCAAGACCACAGAGGCTCAAAAGGGCCTAACCGAGGCAGCCACTGTGATGATGAAATTCATTTATGACCGAACTGAGACCGATGGCTGGTTTCGTATGCTCCTAGATGGCTTCAGCAATGCAGGTTATTGTACCCTTGCTGAAGCCATTGATTCGACTGACTTTGCTGCCATAGATAAGGCAACAGTTCACAAAGAGGAAGTGAGGAGGCTCAGTGTCATGCTGCACCAGGTGAAGCCCCTGGACATTCTGTTACACATGCCTGGTGGACTGCTGCCAACCCAGAGGGAGAGGGTTGAGCGGATGACTGCAGAAAATGGAAATATTAGTGGAATGCAAACAATGCTGGACCTCCTGCTCAGAACAGATGACCCCCAGTGGTACAGTTACTTTCTGGATGCTCTGAGGAAGGGTGGATATTGGCATGTGGTGAATGTTCTGGATGATCAAAATGGCAATGCATCACAGCAAGGTGCTGAGGGCAAGGAAGAGGCATTGGAGGAAATGGAAATTTCTTTCAGCGAAGAAGCAGGTCACTCCAATCTCTGTGCCAGTGCAGACGATGTAAAAGATGGATGCCAACCAGCATCAAACTATGAGGATATGCCGTCTTTAGGGCAACTGCGAAACTACCAACAAGAATTAGCTGAACCAGCACTGAAGGGCAAGAACACTATTATATGTGCTCCAACAGGCTCGGGGAAAACGATGGTTGCCATGGAGATCTGCAAACAGCACTTGGAGCAGGCTACAGAGGAGAGGGGGCGGAAAGTAGTGTTCCTTGCCAACACTATCCCACTGTGCCAGCAGCAGATGGAAATGTTTCAAAAGTACTTTGACTACACAGAGGTTGGGGTGACCGgtcattttggggaaaatgcCAGCCCATTAGCTATCCGAGTCTCAGTGGATACTTATGACATCATGGTGATGACACCAAAGCTTTTTGAGATCAACGTTGAAGAGGGCTACATACCTGGACTCTCGACATTCAGTCTCATCATCTTTGATGAATGCCACCACACCATGAAGAACCATTCCTACAGTGCAATCATGAAAATGTACATGGACATCAAGATGGGTCCTGAAGCAACACCACTCCCACAGATTGTAGGTCTGACAGCATCTGTAGGGGTGGGCAAGTCCAAGAATGAGCAGGAAGCCAGAGAGTACATCTACCAGCTATGTGCCAACCTGGACACTGACACCATTTCCACTGTGAGGCAGAATGAGGAAGAGCTTCGTTCCCATGTCTTTGTTCCAACTAAAGATACTATAATTGCCAAGCGCCGTGTCTCCAGTCCTTTCATGGATAATGTGTTGGAACTGATGGCACAAGTAGAATCCCTTGCAAAAAAAACCTACAACATTGACACCCTGTCTAAGATCCCCCGGAGCACCCGCGGGAGCCAGAGTTATGAGCAGTGGATTGTAGAGGTCCAGAGGAATTGTAAGGTTCTGAGGCTGGACAATGAGGATGAAGAGAAAAAGGTCTGCAGAAAGCTGGTCACCTGTTCAGAGCACCTTAGGAAATACAACGACTGCCTCATCATATCGGAAGACGCTCGGGTAAAAGATGCTTTTAAATATCTACAGGAGTATTTTAACAATATGGATCCAGCATTTTTTGATGAAACCGATGAGAAACTGGTAAACTATTTTCAAGaGAAGACGGCCATGTTGGAAAAGTTTGCAAATGACAGTGTTACGGACAATCCCAAGCTGTGCCAGCTACAGATGGTCTTTGCAGAGCAGTACAGGTTTAAACCTGAAACCCGTACCATCCTGTTTGTCAGGACCAGGGCACTAGCAGAGGCCATTAAAGAATGGGTTTTGGAAACACCTTCTCTAGCTCATCTCAGACCAAGGGTTCTCATTGGACGtagaaaaactgaaaatgttgAAGGGATGTCTCTGTCTAACCAGAAAGCCGCCCTGGATGCCTTTCAGGTGGGCGGCAGCAAGCTCCTGATCGCCACCTCTGTGGCAGATGAGGGCATCGACATTGCCACCTGCAACCTGGTTTTGCTCTATGACTACGTGGGCAACGTCATCAAAATGGTGCAGACCAGAGGCCGTGGCAGAGCAAAGGACAGCCTCTGCATCCTGATCACCAGCAACTCAGAAAGTGCTACTAAGGAACAGATCAATATCCTGCATGAAAAGATGATGTATGATGCCATAAGCAACATACAGAAAATCGACCACAACAAGTTCCTGACCAAGGTGAACATAATCCAGACAAGCATGAAGAAAATTCAGGACATGGAGAGACAGATGGCCAAAGCCAGGAGACAGGAAAATGACATCTTTGTGCTGCTGTGTGGCAAATGCCGCAAAGTAACATGCAATTCCAAAGATCTCAGAGTCATTAAGAACTCTCACCGGGTCGTCATCAACAAAGATTTCATTGAGCTCTGCAATGTCGTACCACACCCGAAACCAAAGAAATATGACGACATTGAAATGAAATTCAAGATAGCCTGTGCAGTGTGTAACCATGACTGGGGCATCATGGGATCGTACCTGGGGTTTTCTGAGCTTCCTCTCCTCAAAACAGACGGCTTTGTCTTTGTCAACAATCACACCCAGAGGAAACAAGTGGTGAGGAAATGGCAGGACTTTCCAGGAGTCATAGAAGAGTTCAACATCCTGGAGATGAGTAGTGCTGCACAGGGAAAGGGAGTGTAA

Transcript

SKAU_T00360710

TCACTACTATTCTTATACAAATTGTTCGTTCTTTGCTTCCTTGTTTCATGAATTTCGCTAAAAACGAAAGTTACCTCAAACCTGGAATGATTCCTGGGAAACGAAACTGATTAGAGCAGCTTAACAGATAGTATCGCGGACGTAGGCTACAAGACTACACTCACTCGTAGAGGATGGCGGAGAAGAACATTCTACAGAAGTATCAGTCATATATTACACAGATTATCCAGCCATCGTGTATACTACCCCTGGTTGACTTTTTGAATGACTATGCGGAGCAGATCAAGACCACAGAGGCTCAAAAGGGCCTAACCGAGGCAGCCACTGTGATGATGAAATTCATTTATGACCGAACTGAGACCGATGGCTGGTTTCGTATGCTCCTAGATGGCTTCAGCAATGCAGGTTATTGTACCCTTGCTGAAGCCATTGATTCGACTGACTTTGCTGCCATAGATAAGGCAACAGTTCACAAAGAGGAAGTGAGGAGGCTCAGTGTCATGCTGCACCAGGTGAAGCCCCTGGACATTCTGTTACACATGCCTGGTGGACTGCTGCCAACCCAGAGGGAGAGGGTTGAGCGGATGACTGCAGAAAATGGAAATATTAGTGGAATGCAAACAATGCTGGACCTCCTGCTCAGAACAGATGACCCCCAGTGGTACAGTTACTTTCTGGATGCTCTGAGGAAGGGTGGATATTGGCATGTGGTGAATGTTCTGGATGATCAAAATGGCAATGCATCACAGCAAGGTGCTGAGGGCAAGGAAGAGGCATTGGAGGAAATGGAAATTTCTTTCAGCGAAGAAGCAGGTCACTCCAATCTCTGTGCCAGTGCAGACGATGTAAAAGATGGATGCCAACCAGCATCAAACTATGAGGATATGCCGTCTTTAGGGCAACTGCGAAACTACCAACAAGAATTAGCTGAACCAGCACTGAAGGGCAAGAACACTATTATATGTGCTCCAACAGGCTCGGGGAAAACGATGGTTGCCATGGAGATCTGCAAACAGCACTTGGAGCAGGCTACAGAGGAGAGGGGGCGGAAAGTAGTGTTCCTTGCCAACACTATCCCACTGTGCCAGCAGCAGATGGAAATGTTTCAAAAGTACTTTGACTACACAGAGGTTGGGGTGACCGgtcattttggggaaaatgcCAGCCCATTAGCTATCCGAGTCTCAGTGGATACTTATGACATCATGGTGATGACACCAAAGCTTTTTGAGATCAACGTTGAAGAGGGCTACATACCTGGACTCTCGACATTCAGTCTCATCATCTTTGATGAATGCCACCACACCATGAAGAACCATTCCTACAGTGCAATCATGAAAATGTACATGGACATCAAGATGGGTCCTGAAGCAACACCACTCCCACAGATTGTAGGTCTGACAGCATCTGTAGGGGTGGGCAAGTCCAAGAATGAGCAGGAAGCCAGAGAGTACATCTACCAGCTATGTGCCAACCTGGACACTGACACCATTTCCACTGTGAGGCAGAATGAGGAAGAGCTTCGTTCCCATGTCTTTGTTCCAACTAAAGATACTATAATTGCCAAGCGCCGTGTCTCCAGTCCTTTCATGGATAATGTGTTGGAACTGATGGCACAAGTAGAATCCCTTGCAAAAAAAACCTACAACATTGACACCCTGTCTAAGATCCCCCGGAGCACCCGCGGGAGCCAGAGTTATGAGCAGTGGATTGTAGAGGTCCAGAGGAATTGTAAGGTTCTGAGGCTGGACAATGAGGATGAAGAGAAAAAGGTCTGCAGAAAGCTGGTCACCTGTTCAGAGCACCTTAGGAAATACAACGACTGCCTCATCATATCGGAAGACGCTCGGGTAAAAGATGCTTTTAAATATCTACAGGAGTATTTTAACAATATGGATCCAGCATTTTTTGATGAAACCGATGAGAAACTGGTAAACTATTTTCAAGaGAAGACGGCCATGTTGGAAAAGTTTGCAAATGACAGTGTTACGGACAATCCCAAGCTGTGCCAGCTACAGATGGTCTTTGCAGAGCAGTACAGGTTTAAACCTGAAACCCGTACCATCCTGTTTGTCAGGACCAGGGCACTAGCAGAGGCCATTAAAGAATGGGTTTTGGAAACACCTTCTCTAGCTCATCTCAGACCAAGGGTTCTCATTGGACGtagaaaaactgaaaatgttgAAGGGATGTCTCTGTCTAACCAGAAAGCCGCCCTGGATGCCTTTCAGGTGGGCGGCAGCAAGCTCCTGATCGCCACCTCTGTGGCAGATGAGGGCATCGACATTGCCACCTGCAACCTGGTTTTGCTCTATGACTACGTGGGCAACGTCATCAAAATGGTGCAGACCAGAGGCCGTGGCAGAGCAAAGGACAGCCTCTGCATCCTGATCACCAGCAACTCAGAAAGTGCTACTAAGGAACAGATCAATATCCTGCATGAAAAGATGATGTATGATGCCATAAGCAACATACAGAAAATCGACCACAACAAGTTCCTGACCAAGGTGAACATAATCCAGACAAGCATGAAGAAAATTCAGGACATGGAGAGACAGATGGCCAAAGCCAGGAGACAGGAAAATGACATCTTTGTGCTGCTGTGTGGCAAATGCCGCAAAGTAACATGCAATTCCAAAGATCTCAGAGTCATTAAGAACTCTCACCGGGTCGTCATCAACAAAGATTTCATTGAGCTCTGCAATGTCGTACCACACCCGAAACCAAAGAAATATGACGACATTGAAATGAAATTCAAGATAGCCTGTGCAGTGTGTAACCATGACTGGGGCATCATGGGATCGTACCTGGGGTTTTCTGAGCTTCCTCTCCTCAAAACAGACGGCTTTGTCTTTGTCAACAATCACACCCAGAGGAAACAAGTGGTGAGGAAATGGCAGGACTTTCCAGGAGTCATAGAAGAGTTCAACATCCTGGAGATGAGTAGTGCTGCACAGGGAAAGGGAGTGTAATTGTGTGAAGTACAGTAGCTCTCATATTGTTCACCGATACAGTGCTTTACTTCCAAGTCTGAATACataattatattataaattaGATAAAGTGGTAACGGGAGTACAGGTGGCATTAGTCTTTAGTATTGATATATAATAATGGCTTCTTTTTTTACGTCTTGTTATTTTCTGCTTTATTATTGGATATTTTACAATGTATGTCATTTTATTAGTTCTTAGTATATGTTGTTCTGATTTCTTGTCTTATTACATTTTGTCTTCATGTATACTCTTTCCAACATGATTTTGTATTTTTGCTTTGGGCATGATGATTCTATCCTGTTATTTTTTGTTAAGCACTTCGGGCTGCAAGTGTATGAAATGTGTTCTACACCGTTTGGTTTATGATTAATACTTTGATAGGATGCATTTTTTCTTCTAAATGAATGAAAGCCTTGTAAAATATGAAGTAATATGCATCATGGTATGTTGTCACAATAAAATTTCAAAAATTGGTGTCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF11648	RIG-I_C-RD	C-terminal domain of RIG-I	Domain	Interproscan
PF16739	CARD_2	Caspase recruitment domain	Domain	Interproscan
PF18119	RIG-I_C	RIG-I receptor C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011029	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR021673	Domain	RIG-I-like receptor, C-terminal regulatory domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR031964	Domain	Caspase recruitment domain	Interproscan
IPR038557	Homologous_superfamily	RIG-I-like receptor, C-terminal domain superfamily	Interproscan
IPR041204	Domain	RIG-I-like receptor, C-terminal	Interproscan
IPR051363	Family	RIG-I-like Receptor (RLR) Helicase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14074	HELICASE WITH DEATH DOMAIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003725	Molecular Function	double-stranded RNA binding	Interproscan
GO:0003727	Molecular Function	single-stranded RNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0039528	Biological Process	cytoplasmic pattern recognition receptor signaling pathway	Interproscan
GO:0140374	Biological Process	antiviral innate immune response	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-