Gene detail

Detailed information of SKAU_T00360620 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00360620	ZINC FINGER RNA-BINDING PROTEIN	CM056392.1	21844396	21870318	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00360620

ATGATTCCCATATGCCCAGTCGTCTCCTTCACCTATGTGCCCAGCCGGCTAGGTGAAGATGCCAAAATGGCTACCGGCAACTACTTTGGATTTCCCCATGGTGGTGCCGCGCAGTACAGTCAGCAGCCCACTGCTGGGGTAGCCTACACCCACCCCACCACAGTGGCCAGCTACACTGTGCACCAGGCGCCCGTCGCGGCTCACACCGTGGCGGCCGCCTACGCGCCCACCACCGTGGCCATGGCCCGACCGGCGCCGGTGGCAGTGGCAGCTGCGGCCACTGCGGCAGCCTACGGGGGGTACCAGCCCACGCACACCGCCGCTGACTACGGCTATGCCCAAAGGCAGCaggaagcccctccccctcccccgcctGTCACAACGCAAAACTACCAGGATACCTATTCGTATGTGCGGTCCACAGCCCCTGCTGTAGCTTATGACAGTAAACAGTACTACCAGCAGCCTACAGCTACGGCAGCTGTGGCCGCCGCTGTTGCTCAGCCACAACCCAGTGTGGCTGAGTCCTACTACCAGACTGGTACGCTCAGCACAACCTGGGAGTCAACATGGAAGAAAAGTCTCCAAGCTTCAAAGACTGCGTATAGCCAGGGAGCCACACCATACGCACAGGCCCAACAAACCCGTCAGGTTACAGCCTTAAAGCCTGCTGCGCCCAGCCCTGCCACCTCCACCTACTCCATCTATCCCGTGTCCTCCACCGTGCAGCCGTCAGCTGCTGTGGCGGCGGCGGCCGCAGCTGCCACGGTGGTTCCGGCGTATTCCCAGAGCCCCACCTACAGCACCGCGGCCGTCACGTACTCCGGCACGTCGTACTCCGGATATGAAGCGGCGGTGTACTCGGCCGCTTCGTCCTACTACCagcaacagcagcaacagcagcagcagcagcagcagcagcagcagcagaagcaggCGGTGGCGGCAGCGGCAGCCACCGCAGCCTGGACCGGGAGCACCTTCACCAAGAAGACCCCCTTCCAGAACAAGCAGCTCAAACCCAAGCAGCCCCCCAAACCCCCTCAGATCCACTACTGCGACGTGTGCAAGATCAGCTGCGCCGGGCCTCAGACATACAAGGAACATCTGGAGGGGCAGAAGCACAAGAAGAAGGAGGCGGCGTTGAAGGTGTCCCAGAGCGGAAGCGCCGGGGGCACCGGCGGGAGCGCCAACGCCGGCTCGGCACGGGGCACTCAGAACCAGCTGCGCTGCGAGCTGTGCGACGTCTCCTGCACGGGCGCCGACGCCTATGCCGCTCACATCCGCGGGGCCAAACACCAGAAGGTGGTGAAGCTGCACACCAAGCTCGGGAAGCCCATCCCCTCCACTGAGCCCAGCGTGGTCACCCAGACGCCCACGGCCACTACGGCTGCCCCCAGCAAGGCTGCTGGCCCCGCTGTCAGCAGCGCGGcaagtagcagcagcagcacggcCTCATCCgcctcctcctacctgaagcccATCAACATTGTGGGCGGTGCCCCCACCACAGCTGGGCAGGCCAAGGGCCCCACCTCTGTCGTTCCACCCAACAGCTCCTCCGCTATGAAGAAGATGAACACACCCAAGATCAATTTCATAGGAGGAAATAAGCTGCAGACCACGGGTTCAAAGACGGACGACGTGAAGGCGGCCCAGCCTGTGCTCCCCGCCCAGGCACAGGAGGCGAAGGCCGATCCTGCAGCCGAGTCGCTGTCCACACAGTCCACCCTGGCAGCTCTGCAGAGCGATGTCCAGCCTGTGGGCCACGACTATGTGGAGGAGGTACGCAACGATGAAGGCAAAGTTATCCGATTCCATTGCAAGCTTTGTGAATGTAGCTTTAATGATCCAAATGCTAAAGAGATGCATTTGAAGGGGAGGAGACACCGCCTGCAGTATAAGAAAAAGGTGAACCCTGACCTCCAGGTGGAGGTGAAGCCCAGTATCCGTGCTCGCAAGATCCAGGAGGAGAAGATGAGGAAGCAGATGCAGAAGGAAGAGTACTGGAGGCGGCGTGAGGAGGAGGAGCGCTGGAGGATGGAGATGAGGCGCTATGAGGAGGATATGTACTGGCGCCGCATGGAAGAAGAGCACCATTGGGACGACCGCCGCAGGATGCCAGACGCAGGTTATCCCCAGGGCCCCCCCGGGCCGCCTGGTCTGCTGGGAGTCCGGCCTGGCATGCCTATTCTACAAGCACAGGGACCTGTGCCACCTCGTCGCCCCGACTCCTCAGACGACCGGTACGTGATGACCAAGCATGCTGCCATCTACCCCGTGGAGGACGAGCTCCAGGCCATTCAGAAAATTGTGTCCATCACGGAACGAGCACTCAAACTGGTGTCCGACATCATCACAGACCAGGACAAGGGCAAGGGGAAAGATGaggacaaggacaaggacaaggagaaggagaaggagaaggagaaggagaaggacaaAGAAAAAGATAAGGATGTCCAGAGAGACAGGGCTCTTAAAGGTGTGATGAGGGTGGGGGTACTGGCCAAAGGCCTCCTCCTCCGAGGTGACAAGAATGTCAGTTTGGTCCTGCTCTGCTCTGAAAAACCGACTAAGGGCCTTATCACCAGCATTGTGGAGCACCTCCCAAAGCAGCTCACGATGGTTACTCCGGAGAAGTACGAAGTGAAGGCCTCCATCCAGGAAGCGGCCATCATCCTGACTTCCTGCGGTGATCCCAAGATGGAAGTGACCATAACGCTGACCTCGCCCACCATTCGGGAAGAAAATGCTCGGGATGGAGATGTAACCTCGGGTTTGGTGAATGACCCAGCGGACGTCTTGGACAGGCAAAAATGCCTTGACGCTCTGGCTGCTCTACGCCACGCTAAGTGGTTCCAGGCTAGAGCAAACGGACTTCAATCCTGTGTGATTATCATTCGCATTCTCCGTGATCTCTGTCAGCGTGTTCCCACATGGTCTGCCTTCCCCAGCTGGGCTATGGAGCTGCTTGTTGAGAAGGCCATATCCAGTGCTTCAGGCCCCTTGAGCCCTGGAGATGCACTGAGGAGAATCTTTGAATGCATTTCTTCTGGGATTCTGCTGCCAGGTGGTCCGGGGTTGGTGGACCCTTGTGAGAAGAATTCAGCGGACACCTTGGGTGCCATGACCGAGCAGCAGAGGGAAGATATCACGTCCAGTGCTCAGTTTGCACTCCGTCTGCTTGCGTTCCGCCAAATCCACAAAGTCCTGGGTATGGACCCGCTGTCTCAGATGAACCCGCGCTTCAACGTCCGCAATAACCGCAAGCGAAGACGAGAGAACAGCGACGGGGTGGACAGCTGTGAGGGCGAGGGCAAGAAGGACAAGAAGGATTACGACAGCCACTAG

Transcript

SKAU_T00360620

TAGGCATTTCCTGGTCTGACCTTCTAATATAAATCGGAAGGGTGAGGAGTCAGAGTTCGTCAGAGAACAGGAACCCAATGATTCCCATATGCCCAGTCGTCTCCTTCACCTATGTGCCCAGCCGGCTAGGTGAAGATGCCAAAATGGCTACCGGCAACTACTTTGGATTTCCCCATGGTGGTGCCGCGCAGTACAGTCAGCAGCCCACTGCTGGGGTAGCCTACACCCACCCCACCACAGTGGCCAGCTACACTGTGCACCAGGCGCCCGTCGCGGCTCACACCGTGGCGGCCGCCTACGCGCCCACCACCGTGGCCATGGCCCGACCGGCGCCGGTGGCAGTGGCAGCTGCGGCCACTGCGGCAGCCTACGGGGGGTACCAGCCCACGCACACCGCCGCTGACTACGGCTATGCCCAAAGGCAGCaggaagcccctccccctcccccgcctGTCACAACGCAAAACTACCAGGATACCTATTCGTATGTGCGGTCCACAGCCCCTGCTGTAGCTTATGACAGTAAACAGTACTACCAGCAGCCTACAGCTACGGCAGCTGTGGCCGCCGCTGTTGCTCAGCCACAACCCAGTGTGGCTGAGTCCTACTACCAGACTGGTACGCTCAGCACAACCTGGGAGTCAACATGGAAGAAAAGTCTCCAAGCTTCAAAGACTGCGTATAGCCAGGGAGCCACACCATACGCACAGGCCCAACAAACCCGTCAGGTTACAGCCTTAAAGCCTGCTGCGCCCAGCCCTGCCACCTCCACCTACTCCATCTATCCCGTGTCCTCCACCGTGCAGCCGTCAGCTGCTGTGGCGGCGGCGGCCGCAGCTGCCACGGTGGTTCCGGCGTATTCCCAGAGCCCCACCTACAGCACCGCGGCCGTCACGTACTCCGGCACGTCGTACTCCGGATATGAAGCGGCGGTGTACTCGGCCGCTTCGTCCTACTACCagcaacagcagcaacagcagcagcagcagcagcagcagcagcagcagaagcaggCGGTGGCGGCAGCGGCAGCCACCGCAGCCTGGACCGGGAGCACCTTCACCAAGAAGACCCCCTTCCAGAACAAGCAGCTCAAACCCAAGCAGCCCCCCAAACCCCCTCAGATCCACTACTGCGACGTGTGCAAGATCAGCTGCGCCGGGCCTCAGACATACAAGGAACATCTGGAGGGGCAGAAGCACAAGAAGAAGGAGGCGGCGTTGAAGGTGTCCCAGAGCGGAAGCGCCGGGGGCACCGGCGGGAGCGCCAACGCCGGCTCGGCACGGGGCACTCAGAACCAGCTGCGCTGCGAGCTGTGCGACGTCTCCTGCACGGGCGCCGACGCCTATGCCGCTCACATCCGCGGGGCCAAACACCAGAAGGTGGTGAAGCTGCACACCAAGCTCGGGAAGCCCATCCCCTCCACTGAGCCCAGCGTGGTCACCCAGACGCCCACGGCCACTACGGCTGCCCCCAGCAAGGCTGCTGGCCCCGCTGTCAGCAGCGCGGcaagtagcagcagcagcacggcCTCATCCgcctcctcctacctgaagcccATCAACATTGTGGGCGGTGCCCCCACCACAGCTGGGCAGGCCAAGGGCCCCACCTCTGTCGTTCCACCCAACAGCTCCTCCGCTATGAAGAAGATGAACACACCCAAGATCAATTTCATAGGAGGAAATAAGCTGCAGACCACGGGTTCAAAGACGGACGACGTGAAGGCGGCCCAGCCTGTGCTCCCCGCCCAGGCACAGGAGGCGAAGGCCGATCCTGCAGCCGAGTCGCTGTCCACACAGTCCACCCTGGCAGCTCTGCAGAGCGATGTCCAGCCTGTGGGCCACGACTATGTGGAGGAGGTACGCAACGATGAAGGCAAAGTTATCCGATTCCATTGCAAGCTTTGTGAATGTAGCTTTAATGATCCAAATGCTAAAGAGATGCATTTGAAGGGGAGGAGACACCGCCTGCAGTATAAGAAAAAGGTGAACCCTGACCTCCAGGTGGAGGTGAAGCCCAGTATCCGTGCTCGCAAGATCCAGGAGGAGAAGATGAGGAAGCAGATGCAGAAGGAAGAGTACTGGAGGCGGCGTGAGGAGGAGGAGCGCTGGAGGATGGAGATGAGGCGCTATGAGGAGGATATGTACTGGCGCCGCATGGAAGAAGAGCACCATTGGGACGACCGCCGCAGGATGCCAGACGCAGGTTATCCCCAGGGCCCCCCCGGGCCGCCTGGTCTGCTGGGAGTCCGGCCTGGCATGCCTATTCTACAAGCACAGGGACCTGTGCCACCTCGTCGCCCCGACTCCTCAGACGACCGGTACGTGATGACCAAGCATGCTGCCATCTACCCCGTGGAGGACGAGCTCCAGGCCATTCAGAAAATTGTGTCCATCACGGAACGAGCACTCAAACTGGTGTCCGACATCATCACAGACCAGGACAAGGGCAAGGGGAAAGATGaggacaaggacaaggacaaggagaaggagaaggagaaggagaaggagaaggacaaAGAAAAAGATAAGGATGTCCAGAGAGACAGGGCTCTTAAAGGTGTGATGAGGGTGGGGGTACTGGCCAAAGGCCTCCTCCTCCGAGGTGACAAGAATGTCAGTTTGGTCCTGCTCTGCTCTGAAAAACCGACTAAGGGCCTTATCACCAGCATTGTGGAGCACCTCCCAAAGCAGCTCACGATGGTTACTCCGGAGAAGTACGAAGTGAAGGCCTCCATCCAGGAAGCGGCCATCATCCTGACTTCCTGCGGTGATCCCAAGATGGAAGTGACCATAACGCTGACCTCGCCCACCATTCGGGAAGAAAATGCTCGGGATGGAGATGTAACCTCGGGTTTGGTGAATGACCCAGCGGACGTCTTGGACAGGCAAAAATGCCTTGACGCTCTGGCTGCTCTACGCCACGCTAAGTGGTTCCAGGCTAGAGCAAACGGACTTCAATCCTGTGTGATTATCATTCGCATTCTCCGTGATCTCTGTCAGCGTGTTCCCACATGGTCTGCCTTCCCCAGCTGGGCTATGGAGCTGCTTGTTGAGAAGGCCATATCCAGTGCTTCAGGCCCCTTGAGCCCTGGAGATGCACTGAGGAGAATCTTTGAATGCATTTCTTCTGGGATTCTGCTGCCAGGTGGTCCGGGGTTGGTGGACCCTTGTGAGAAGAATTCAGCGGACACCTTGGGTGCCATGACCGAGCAGCAGAGGGAAGATATCACGTCCAGTGCTCAGTTTGCACTCCGTCTGCTTGCGTTCCGCCAAATCCACAAAGTCCTGGGTATGGACCCGCTGTCTCAGATGAACCCGCGCTTCAACGTCCGCAATAACCGCAAGCGAAGACGAGAGAACAGCGACGGGGTGGACAGCTGTGAGGGCGAGGGCAAGAAGGACAAGAAGGATTACGACAGCCACTAGGCAATGCCCATCTGAGGCACAATGCCCATCTGAGGCACTAATATTAAGGACCGTGCATACAGACCTTTTTTTTCCCGTTTTGTTTTCTTAATATACCTCTTAGTTGTGATATCTTTAGTGTATTGTACTTGTTCTAGACCTCCCATTTTGATTTATAACTGTTAAGCAGACCTGCCAGACTGCTGCTAGACTGCGTATTACCAAAACTCCTAAATATCAATGTCTGTGCTGTACTGTATTGTTTTGGCTTCAGAATGATCTGAACAGTGGGTCACGTGCACTCACCATAGTTAAAGCtgtttagcctataggctatatattggGTACAATACTGTAGGATTATCTGCGATGAAGCTCTGCCACAGCCTCTAGTTAGTTCTGGagcatttttagtttttaatTGGGGGAAGGAGGGGAATTCTCTCAACAATAAAACCAAGCTAAAACAAAATTAACAATTATATTACCATCATAGGTATCTAGCCATAAAGAAACTTGACTAACAATAGATGCTTACaggagtatatattttttaaacaaggTACATTTATTTCAGTCTAGCTGGCATGAAGCACACCACCTGAAATCATAAAATTCTTTATTTCTCAGAGGTGTAgtacaaaatgaaattaattttatttgcacAGTGCAAATGGAGTATAACTAATATGCTGTTGAAAGGTTGGGCTGGTAATGTTGTGATGTTCCGCTAGTCAGATGTCATGCCAGACTAATGCTTTTGCAGGTTGCCCATGGCATTGTATTAAGCTGTCAGTTATTGCAGAGACATTTGTGTTTGTAATGATTATTCCATAACTTGGatctaatttaaaaaatgctaataaaaaaaaaaaagctagcatAACATGCatgactattttttatttttacggctTTTGAAGTTTTATTTCCTAATTGAAGAGTAATGCCTGGCCTTTAGCCCTGGATTAAATACTACATGGTATCTAAatctaaagaaaaaaataagggTAGAAAATTGTGAGCCTGTGACAACTGCGTCACTCCAGTGTTGTAACTGTGGTTTTCAATGTAAATCCATTCTCAATGATGGTCGTTTGCTCTGTATTACTGCGTTACAATGGGCAGAATAAAACCATTCCAGATTCAAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07528	DZF_N	DZF N-terminal domain	Domain	Interproscan
PF12874	zf-met	Zinc-finger of C2H2 type	Domain	Interproscan
PF20965	DZF_C	DZF C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003604	Domain	Matrin/U1-C-like, C2H2-type zinc finger	Interproscan
IPR006561	Domain	DZF domain	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan
IPR043519	Homologous_superfamily	Nucleotidyltransferase superfamily	Interproscan
IPR049401	Domain	DZF domain, N-terminal	Interproscan
IPR049402	Domain	DZF domain, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45762	ZINC FINGER RNA-BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003725	Molecular Function	double-stranded RNA binding	Interproscan
GO:0003727	Molecular Function	single-stranded RNA binding	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0071011	Cellular Component	precatalytic spliceosome	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-