Gene detail

Detailed information of SKAU_T00357920 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00357920	T-LYMPHOCYTE ACTIVATION ANTIGEN	CM056392.1	12158971	12171283	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00357920

AGCCTACCAAGAACCATAAGAAGTATATTTAAAGCTACTAAGTGCACGCGCATGAGAGAACGTGATTCTGACGGCGGAGAAGTTCTTCTCCAGGTGAAATGGAGAGAGTCCTTTTTCTGATTTTGCAAGTTGTCTTGTGGCCAAGAGTCCCAGCCCTGTTCACCGTGGAGGTGACCAAGCCCTCCCACCAGGCCGAGTTTGAGGGCAACGTTACGATGGAGTGCAGGTTCCTGCcaggagggagcgagggcggccTGTCCGTGTTCTGGCGACGCATCCACCCTGAGCCCCCCATGGAGGTGTACAGGCTGGAAAAGGGGCAGGAGGGCCTGGTGTTCCAGGACCCCTACTACAAGGGCCGGGTGTGGCTGATGAGGGAGGAGCTGACGAACGGACGGTCCGTGCTGCAGATCTCCGATCTGAGGATAACCGACTCCGGAACGTACCGATGTCTGGTGGAGATGGGGGGAGTTGATTATAAACAGACTGTTCTCACAGTAATAGCGCCCTATAAATCAATACACAAAAGCGTCAAGACTAGTGAAAGAGGGGTGGAACTGTCCTGTGAGTCCCAGGGCTATCCACAGGCCAGTGTTGTCTGGACAGACTCGACAGGCTGGAACATAACCAAGGAATCTAACGTCACAATGGCCACAACTACCGACGGGCTGTGCCACATCACCAGCACAGTAACTGTCAAAAGCTCCAACAACACCTACACTTGTACCTTTGTGGGGGAAGGGCTTATGGACCAATCAGTCCTGTTCCATATTCCAGAAGAAATACCTGTGAAGATGACagaaaaaagctcaatttttttCTTCATGTTTGTATTGATTGGGATCATCACAGTATGCGTGGGAATTGTGGTGTACTGCAAGCATAAAGATTGCAAGAAGCGCATCATAGCAAGGCCCAGAGACTGTCTACTCCCAGAGAATTACGCTGCAGCATGTCTTTCCCAGGAAACCACCATTGAAGTCCAGACCCATGAAGGTGAAGAAAGCGGACGAGTGGAGAGTCTGAGGGAGGTTCTGAGAAGCAGATACGCAGGTCTCACTTCACAGTCATCAGAATGCTTTTGTGACAAGGTGTTACCACGGCACCTGTGGAACAGGGATGGTTTGCTTTTGGAGGCCACTACCCTGCTGCCTGGTGCTGGGGAATCCCTTCTCCTGGAGGGGGAGCCTAAGAGTGGGAAAACCAGCGTGGCTCTCGCCCTGGCCTCTGCCTGGGCCCAAAACTCTGAGTGGGACCCATTTGGTGTCAAGAGCTGTCAGCTGGTTGTGCTGGTGACCTGCGAGGGAGCTACGGGTGACCTGTTCCAGGAAGCGATGTCACAGCTGGACCTGGACGGAGAGCTCACTGTTTCCGCCCTGCAGGAAATTCTGACGGGGCCGGCTGAAGCTCTGCTTGTCCTGGATGGGTACACATTCGGAAACACGGAGCTTGATAAGTCACTCGGAGAGTTGCTGAGGGCTCGGCCCGCCTGCAGAGTGTTGGTGACGGCGCTGCCGGGACTGTGCTCCGACCTGAGGGAGCTTTTCAGGACGGTGCTGCTTCTTACGCAATAGTGCGCATAAAGCCACGGACGCTGCTGACGTCAAACAGACGAGGGAAGCGATGGACAATCTCAAAAATTCACAATCTCACGCCCCACAGTTGCCACTTAATAGCCTGGACTTGAACTGTCTGAGTGTCCTTTTTTTTGTCTGTACCGTGTACCTTTAAGCTTCTGTAGAGTGGCACTAGTTAACGACTATAGCAAGTTAACATAGTGGAGGTTACTTTAGAGTTATGAAATTATGTCTGCCATTTCAGTCATAGCCTACTGCTGTCACATCGCCATTCTTGCAGAGCTTGAAATGGTTTATTTTTGGGGCTTCTGGGTGACTCCTCCTGCCAAAGCCTAGGTTTTGTGTGCTAGTGATGGGCCCCATTGTCTGGCATCCAATCTTGAGCAGCACTGTGAGCAGCAGCACTACATGTCACTACATAACTGGCTGTAGTGTCACCCTGGGAGGGAGGGTTACAGTTGGTAGAGATGTTATCCCTATTAAATCGCACAAGAGCAGCCAGCTGATGCTATGACTGTACTATGATATGCTATGCTATGAGTGACAAGAAGTGACAGCTGGTAACGTGCACCTCAAAGGGGAATTTACGCTTGGCTGCATTCTTACAAAGGAATGGAGGATGTCGCAGTAATGGGAATGCCCGATAAATACGATTGCGCATTGCACATTGTGAGAACAACTGATAGTGGTGATAATTGGATCAAAAGAAGAAATGACCctttggaaaaagaatatgctgcagaaaattatcttcacaatatatttaaaatatacttcagtatattacatttcataCGGGTGGATCCAAAATGAATAGCTAATTGGCAGGTCACAAAGACATTTTACTGCCCTTAGTGTAAGTGTGCACTTAACTGGCACCTCGGCTGCCTCCATGAGAAAGTACCCTGCATGGGAAAGTGTTTGCTTACCAAACATTCACTAGCCTTGTAAGGGCCACTGACTGTGTTCCGAGTCCTTCCTTTGCCCTAATTTTGGGTGTTGGAACAGACACCCCAGCACTAGTGATTATTCCAAACTGTAACGGTTGAGGGGAGGATGCTCAGATCAGTCCCAAAATAAACCCTCAGAGGGGAATTCCAGAGTAACGACAAACATTCCCAAACATTCTTGTGAGCTGTGTGTGCTGTAATATTATCATTCATGGGTAATGGTGGGAGTTAGCCACGTGCAATTGGTGATGATTTTAAGGTGCATTCCAAAATGCATACATTGCTGTTACATTCCTGAGATCCCAGCACTAACCACACAATAATATTATAACATTATGTAACATAATAACATAATATACATTACGGAATGGAGTTTAAGAATTTAAGGGATAGGTTTGGAATGCCATCTTGGCTTGAGGTGTTGAGGTATGTCCAACTAAACTGTACATTGATCCTGCCAAATGCCACGGGCAGGCTTATGAAGGCTGGTCCCTTCATAATGAGGAACAACTGTTGTTTGATGACTTTTTGTacatgccggtgtaaatctaacactgccggtgtacatttaacacactaAGATGTTAAATGTACGCCACCATTTTTTCAGTGTGGTCAGGTTATTCGCATTAAAATTGTATGACCAAACAAGGCACTGCAGCACGCTGTGGGATTTATGAAATGATGCAATAGAATGAATGTCTACTTACAGCAAAATGAAACTAACTGATTGCCTGATGTGTATTGTGGAGATTCAGAGACATACTTTTGGTTGTGTGGAAATTGCGAATCCGAAATATAATTCACAACTGGGGCGATACAAGTAATGTCAGGACTGTTAATGTGCAGGAATTAGAAACTTCACTTGCATCCTATAGGTCATTATAGTTTGTGTATTGTGTACAGTCTATTCAGAAATGTGTTTGTTGAAACTCATATTAAAACATTGAGTCTGTCAGTGACATGTAGAATGCACCAGGGTTTTAAAGCATACTGAATGTGAAAAGGGGCTAGATCGTTGTGCC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07686	V-set	Immunoglobulin V-set domain	Domain	Interproscan
PF13481	AAA_25	AAA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013106	Domain	Immunoglobulin V-set domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR051713	Family	T-cell Activation and Immune Regulation Protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR25466	T-LYMPHOCYTE ACTIVATION ANTIGEN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006955	Biological Process	immune response	Interproscan
GO:0007166	Biological Process	cell surface receptor signaling pathway	Interproscan
GO:0009897	Cellular Component	external side of plasma membrane	Interproscan
GO:0031295	Biological Process	T cell costimulation	Interproscan
GO:0042102	Biological Process	positive regulation of T cell proliferation	Interproscan
GO:0042130	Biological Process	negative regulation of T cell proliferation	Interproscan
GO:0071222	Biological Process	cellular response to lipopolysaccharide	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-