Gene detail

Detailed information of SKAU_T00357750 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00357750	ADDUCIN	CM056392.1	11488964	11515097	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00357750

Transcript

SKAU_T00357750

ATGCAGTATAAATCAATTGAGGGCCCTACGGCATGTGGTCTTGAGCGCTACTTCGACCGCGTGGACGAGAGCAGCGCGGAGTACCAGCGCGAGAGGAACATGGCCCCCGATCTGCGGCAGGACTTCAACATGATGGAGCAGAGGAAGAGGGTGTCCATGATCCTGCAGAGCCcgGCCTTCTGTGACGAGCTGGAGACCATGATCCAGGACCAGCTGAAGAAGGGAAAGAACCCCACCAGCCTGCTCGCCCTCCAGCAGATCGCCGACTTCATGACCACCAGCGTCCCCACCATGTTCCCAGCAGCGCCACAGGGGGGCATGGCCGCCCTCAACATGAGCCTGGGCATGGTGACCCCAGTGAATGACCTGCGTGGATCTGATTCCATCGCCTATGAGAAGGGCGAGAAGCTTCTCCGCTGCAAGCTGGCTGCCTTCTACCGCCTGACGGACCTCTTCAGCTGGTCACAGCTCATCTACAACCACCTGACTGTCCGACTGAACTCTGACCAGGAGCGTTTCCTGATCGTCCCCTTCGGCCTTCTGTACAGCGAGGTCTCTGCGTCCAGTCTGGTGAAAATCAACCTGCAAGGGGAGATTGTGGACCGTGGGAGCACAAACCTGGGCGTGAACCAGGCCGGGTTCACCCTGCACTCCGCCATTTACGCGGCCCGGCCCGACATCAAGTGTGTCGTGCATATCCACACTCCTGCTGGGACTGCCGTTTCGGCCATGAAATGTGGCCTGCTGCCCATCTCCCCAGAGGCCCTCTCCCTTGGGGAAGTGACGTACCATGACTACCACGGCATCCTCGTGGACGAGGCCGAGAACGTGCTGATACAGAAGAACCTGGGACCCACGAGCAAGGTTCTCATCCTGAGAAACCACGGACTCGTCTCTGTTGGGGAGACCGTGGAGGAAGCCTTTTACTACATTCATAATCTGGTCACAGCTTGTGAGATTCAGGTCCGCACTATGGCCAGCGCTGGAGGCCCCGATAACCTAGTCATGCTGGACCCAGCGAAGTACAAAGCCCGGCCCCGCTGCTCCGAGCCCACTGGCGACGGCACCAGCACCCAGCCCAAGTGGCAGGTCGGGGAGCAGGAGTTTGAGGCGCTCATGAGGATGCTGGATAACCTGGGGTACAGAACAGGATACCCCTACCGGTGCCCCGCACTGCGTGACAAAGGTAAAAAGTACAGTGACGTCGAGATCCCCCCGTCAGCCACGGGGTACTCGTACGCAGAGGACAGTCAGTCAGACGCACGCTCCCCTCTCAAGCACAGCTTTCAGAGGCAGCAGCGTGAGAAGACAAGGTGGCTCAACTCGGGCCGGCCCGACGAGGCCTCTGAAGAAGGCCCGGACGGCGGCAGCCCCAAGGCGAAGACTAAGTGGACAAAGGAGGAGGGGCTTCGACAGGCTGCTGTGGCCAATCAGTTTGTCCCCCTGAACACAAACCCCAAAGAGGTCCAGGAGATGAGAAACAAGATCCGTGAGCAGAACCTCCAAGACATCAAAACAGCAGGGCCTCAGTCCCAGGTACTCTGTGGACCTGTGGTGGACCGTTCCTACGTGCAGGGGGAGCTGGTGACTGCATCCAAAGCCATCATTGAGAAGGAGTACCAGCCCCGCGTCATAGTAAGCAAGACTGGACCAAACCCCTTCAACAAGCTGACTGACCAGGAGCTGGAGGAGTACCGCAAGGAGGTGGAACTCAAGCAGAAGGGCCCGGAAGACCAGTTGCAGGACACTGCGGAAGAGGTGAAAGGGCAGAGCCCCACCCGCACCCCACCCAGTACCCCAATCAAAGCAGAGGAAGAGTCTCTGCAGGAGCAGACTTACAAGGACGAGAGTGACGCCGCCACTTTAAGACAGACCCTACCGGACCTGACCCCAGATGACCCCTCCGAAGCCCCCGTCTTCCCCCCTGATGACCCTGCCCCAGAGCAAACAGAGGAGCCACCCCAGCCTGAGGATCAAGAGCCCCCAGCTGCCCCCGATGCCCCTGACGACCCTGCAGTGGCAGCGGACCAGGGCAGCGATGAGTCCCCCAGCAAGTCTCCctccaagaagaagaagaagttccGCACTCCATCATTTTTGAAGAAAAACAAGAAGAAGACCGAGTCCTAAAACCTTTGCGTCTCTCCGGCAACAGGCCACACCTTGAATTTGATTATTCCATTTGTTTGGCTTATCTAGCGTTCACCTCTAGTGTGTGCCAATTTTAAAAAAGGGTCAGATTGCCCAAGATTTTAACACAGTCGCTTCTCGTGGTGAATGACTGCATTATGTCTGGTCAAGTGCAGTTCTGTGGCTTGTTACGCATGTATATTTAGGTCCACACTCGAAGTGAGCAGTAgacttatttacattttgttttgtaTTACTAAACCCAATTAACCATTAGTATGTATTGGGATGTATCGAAAGTGTCTTTTTAAacagggaatgcaaaaaaattaCTATGTCATTTACCTGGTAATCTTCCatgattttaaaaattcaaacaAAATGCACGGTGCTAATTCTTCACATCCAATAGCATTGAACCTTTTTGTTCTGGAGCTACACTTGATTTTGGGGTCCAATGAAGGCGTTCCTTCTCTGTATCAATGTATACGATGTCATGGCCTAATGGCCCAATGGTAAAACCATTTATACTCCTTATTAATATACTCCCAACATATTACTTCTGAGATAAGTAGACTGCAATTGCTGATTTTTCTGGATATGTTCCGGATTAGAAAAGCACTgcgtaaataaaaataaataaatgacatggCTCCTTAAAATAAAACCAGAAAATTGAATCATGAAGGAAATAGTCTCTATGGCTTTAGTTACTGAGATCTGGAGCATGGCAGCAATGTTTTACCCTGCTCTCCCATTTcctaaatataaatttttaattCTGAGCATGATCTTATCTCTCAGAAACATGTGGCTTACCTCTTTGCCATCATGCAAGAGATACCTGTGGGAAAATTCAAAATGGCAAAAATCGAATTTTGttttattctccattttgttTATTTAGGTTCATAATCCATTTGACTTTTGTCGAGCAATTCTTGTATTGCCTATATTGCGTCCTGAGCCATCATCTGACATAACTGAAGATCTGATCAAAATTATCTGTCAGCATTCGAAAAGCAGCGGTACTTTTCCCTGTGTTTCCAAAACCGATGGTTTCTGAATGCTATAAACTGGTTGGTTCATCTTTTTGAAGAGTGTATGGCGTAAATCTACGGCGCAAAACATTGGTAGCCGACGGTGGACTTCACTGAAGGATAACATGGCGTCTTCCTGTGTCTGCACGTCCAGCTCGTGTCAGATTGTCGGTTCTGGGGCTTCCAACCACCTTGTTCGGCTATGTATATGAGCCCAGAGCGAGACATTGCCGAGTACACCTCAGATATGCGCTAGCTGTCAGAGTTTAGCCCATCCCTTCTCTGGTGCTTCAGTGATAAATTTACAGTTGGCAAATGTCCAAGCTGTAAAATGAATAGCATTTTACAGCTTGGACATGTAACGTTTTTCAAGAGCTTGCGTCCCACTGCACCATCTGGACTTTCATTGAACTCTGTAACGGCAtcatgaaagttttttttttccgcttCAAAATCGCTTGGATATGATACAATTCGAGGCAAATTAACACTATGGCGAACGAAACATGGGCAGGCATTGACATAGGACCAATGTCAATTACCCTTGAGCCTTGTGAAGCTTGGTAAAAACCACTATAAATCGGTTATAgttttgtgcaaaatggcaaCTTTTTTGAAGGACTGCATGGCATAAAAAGCTTAAAGCTTGTATAGTTTGTCTTTGTACATTGACTGCAACCCTCTTTCCTTTGCTATATTGTGCTTTATTGACATGTTTAAGTAATAACAGTACTAAGCCATCTGTCAAATTTCAGTCGTTATTTAGATATCGAGTTCTGTTTTATGAACGCAGTTACTTTTAACCTTGTTTGTATTACCTGCACTATTTTCAATACATCTATGTGCTATACCACCCCTTCCACATTTTTCATGGCACTGTTTTATTTCATCCATGAATAAAAAACTTAATTTGAAACAATTTCTGAGTTAATATTGATTTGAATTATGTGATTATTACTTGAGAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00596	Aldolase_II	Class II Aldolase and Adducin N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001303	Domain	Class II aldolase/adducin N-terminal	Interproscan
IPR036409	Homologous_superfamily	Class II aldolase/adducin N-terminal domain superfamily	Interproscan
IPR051017	Family	Aldolase class II Adducin subfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10672	ADDUCIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005856	Cellular Component	cytoskeleton	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0005912	Cellular Component	adherens junction	Interproscan
GO:0005925	Cellular Component	focal adhesion	Interproscan
GO:0014069	Cellular Component	postsynaptic density	Interproscan
GO:0051015	Molecular Function	actin filament binding	Interproscan
GO:0051016	Biological Process	barbed-end actin filament capping	Interproscan
GO:1903142	Biological Process	positive regulation of establishment of endothelial barrier	Interproscan
GO:1903393	Biological Process	positive regulation of adherens junction organization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-