Gene detail

Detailed information of SKAU_T00357630 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00357630	SEMAPHORIN	CM056392.1	10966101	11001405	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00357630

ATGCATATGAATGAGGACACAAAGATACGGTTATGCTGCCTTTTCAGAAAGGGGATAGGAGGGCAACTGGCTTTCAGTGACAGCATTGCCCAGGACGACCTCAAATTTCCCCTCTGGTACATTGCAGGCCATGATGGACAACATGAGAATATTGTAATTCTCCCTGAAGAAAGACCTCCATCTAGTAGAGCTTCGTGGAAGAGCCACAGAGGAAACTTTACATTACCGAAGATCCCTGAATCCAACATGGCATTCAGTGTCCTCGGAGTGTTCTTGGGACTCCTACTGGAGGTGTCAACACATGGCCCCACCAGCATTCCAAGGATGTCCTGGAAACACCAAGATGTCAATTTGATAGAATTCTCAGAAGAAGGAATCTTCAATTATTCCACGTTGTTGCTCAGTGAAGAAAAAGAAGTGCTTTATGTGGGAGCGAGGGAAGCCATCTTTGAGTTGAGCATGAGAAATGTGTCGGTCAAGACCAATAAGGTAATATGGAAAGTTCCTGAAAACCATATGTCAATGTGCATCTTAAAAGGAAAATCTAAAGAGACAGACTGCCTAAACTACATCCGGGTTCTACAAGTGCTGAATGATGACAGTCTGTATGTCTGTGGGACACATGCCTTTCAACCTTTGTGTGACTATCTGTCTCTCAAGGATTTTAAACTGCAAGAGAAACAGGAAGATGGCAGAGGGAAGTGTTCCTTTGACCCTGCACAGAGTTTCACCACAGTTATGGTCGATGGAGAGCTTTACTCTGGGACTGCCTACAACTTTTTAGGAAGCGAACCGATCATATCCAGATACTCTCTCTCACAGAGTTTGCTGCGGACAGAGTATTCAACGTCATGGCTGAATGAGCCCAGTTTTGTTTTTGCAGATGTCATCAGAGAAGGCAAGAACAGCTTAGACGGCGAAGACGACAAGATCTACTACTTCTTCACAGAGGTGTCTGTGGAGTACGAATTTTTTGGCAAGCTGCTGATCCCCAGGATAGCCCGTGTCTGCAAGGGTGACTTGGGGGGCCAGAGAACTCTGCAGAAGAAGTGGACATCTTTTCTGAAGGCAAAGTTGGTCTGTTCCATGCCCGAGCTCAACTTTGTCTTCAACGTGGTCCATGACGTCTTCATCCTAAAGACCCCAGACTGGAAAGACACTGTCATATACGGTGTTTTCACATCGCAGTGGGGAAATGTTGGGTTATCAGCAGTGTGTGCCTACAACATGTCCTCGGTGGAGGAAGTGTTCTCAAAGGGGAAGTACATGCAGAAGGCCACAGTGGAGCAGTCTCACACTAAGTGGGTTAGGTATAATGGAATCACCCCCACCCCTCGTCCAGGAGCGTGTATCGACAACAACAATAGACTGCAGAACATGAACAGCTCTCTTCATCTGCCGGATAAGACCTTGCAGTTTGTCAAGGATCACCCTCTATTGGAGGACCCTGTCCTTCCTATTGGTAATGGGCCCAAACTTATCACCAAGGATGTGAACTACACCCAGATCGCTGTGGAGAGGGTCCAGGCCCTAGACAACAATGTGTATGATGTCATATTCACAGGGACAGaTAAAGGGGTCTTGCACAAATCCATAGTCTATGATGGAGTAGTGCACACGATCGAAGAGATACAGCTTCTCCGTAATGTAGAACCCATAAAGACTTTGTTACTGTCTTCACAGGGGACAAGGTTCCTTTATGCTGGGTCAGACTCTGGGGTAGTGCAGTCCCCTACGGCCTTCTGTGACAAGTACACTTCCTGTGAGGACTGCGTTCTGGCGCGGGACCCCTACTGTGCATGGGACACTGATTCCACAGCCTGCCTCAACATATTCCAGGACCCGGACATTGCTCTACGGAACTTAATACAGAGCCTTAATGGTGATGCAGACAAGTGCCCCAATGCGAGGGGCCGGTCCATGGAGCCCTACCGCCAAATCTTGGTGAAGCCAGGGAGCTCGGTAGAGCTGCCGTGTCACGTGGGGTCGAACCTGGCGCAGACGGTGTGGACGGTTAACGGAAGCGCGCTGACCGAGGCGTCGAGGTTCCACCTGCTGGCCGAGGCCGGCCTGCTCATCTATAGCATGGCCCCCGAGGACCAAGGACAGTACGACTGCTGGTCCCTGGAGTGGGCCGGTGGCAAGAACTTTACCCGGCTGGTCACCGGCTACGTCTTGAATCTGTATTCGGTTAAGAGGCCCCCTGCACCGGACCCCTCTACCCCGCTCACCTCCACCACAGCTCACAACCCCGCCACAGTCACTGAAGGTAATGGTAACACCGCTGGACCCCTACTAACGTCAGCCCCTCCCAGCTCCGCTAACTTCATCTCCCCACCCCAGCCCGCGACGTCACTAACCCCAGCGCACAGCAGCACGGCCGCCTTCCTGCAGAAGCACTCTTTCCCCAGCTCCGACGTCCCGCACCCGGAGACTCTCCAACCGGCTACCGAATACCTGCAGCACGACAACGGCAatgccctcctcttcctcttcctcctcttcttcctcctcttcctggcCATCCTCAGCTACAACTGCTACATGCAGTACCTGCCTGCTCCGTGCCTGAAGCTGCGCGCCGCCCTGCTGGGCGGAAAGAAGAAGCCCCAGCCAGAGTACCTGGCCTGTGAGGCGGGCCTCATGGAGCCCGTGGCGGAGAAGCTGGAGCACACGGAGCTGCACCAGCAGAATGGGGCCCAGCAGAAGGCCCTGAGGGACACCGGGTACGAGACCGAGCCCGAGTGCGGGAACGGCAAGATCCCCTCCCTAGAATACGGGGACGAGAGCCCGCCCAAGGAGAGGCCGTTTGACGTTGAGTGTGCGTCGCAGCCGATTGAATATGCCGATGCAGATGTGCCCTACTGA

Transcript

SKAU_T00357630

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01403	Sema	Sema domain	Repeat	Interproscan
PF01437	PSI	Plexin repeat	Family	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001627	Domain	Sema domain	Interproscan
IPR002165	Repeat	Plexin repeat	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR016201	Domain	PSI domain	Interproscan
IPR027231	Family	Semaphorin	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR036352	Homologous_superfamily	Sema domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11036	SEMAPHORIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0001755	Biological Process	neural crest cell migration	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005615	Cellular Component	extracellular space	Interproscan
GO:0005887	Cellular Component	plasma membrane	Interproscan
GO:0007411	Biological Process	axon guidance	Interproscan
GO:0010693	Biological Process	negative regulation of alkaline phosphatase activity	Interproscan
GO:0030215	Molecular Function	semaphorin receptor binding	Interproscan
GO:0030335	Biological Process	positive regulation of cell migration	Interproscan
GO:0043547	Biological Process	positive regulation of GTPase activity	Interproscan
GO:0043931	Biological Process	ossification involved in bone maturation	Interproscan
GO:0045499	Molecular Function	chemorepellent activity	Interproscan
GO:0048843	Biological Process	negative regulation of axon extension involved in axon guidance	Interproscan
GO:0050919	Biological Process	negative chemotaxis	Interproscan
GO:0071526	Biological Process	semaphorin-plexin signaling pathway	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-