Gene detail

Detailed information of SKAU_T00357430 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00357430	SPERMATHECAL PHYSIOLOGY VARIANT	CM056392.1	10133053	10238723	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00357430

Transcript

SKAU_T00357430

ATGACAGCTCGCCTCGCCTGGTCTCCAGAACCCCCCAGAGCACTGTCCCGCTCCGCAGCAGCTGAGCTCCTGCATGGAGGTCAGGTTTCAAGGAAGAAACCTTTGGACTTGACAATGGAAGAACAGGCCGTCTCCAACAGTGGCCCCCAGCACGGTCGGACGAGGCAGAATGTCATCAGGTGTGGGTGGCTAAGAAAGCAAGGGGGCTTTGTGAAGACTTGGCACACACGTTGGTTTGTCCTCAAGGGAGACAAGCTCTATTATTACAAAGATGAAGAAGAGACTAAAGCCCTGGGGATGATTTCCTTACCTGGAAACAGAGTCACTGAGCACCCAAACAATGGCGAAGAGGCGGGCAAATTCCTCTTTGAAGTCGTTCCAGGGGGAGACCGAGAGCGAATGACAGCCAATCATGAGACATACCTTCTTATGGCCAGCACCCAGAATGACATGGAGGATTGGGTGAAGACCATTCGGAGAGTAATATGGGCACCCTTTGGTGGAGGTATCTTTGGACAGAAGCTGGAGGAGACGGTGCGCTACGAGAGGCGGTTTGGGAACAAGCTGGCCCCCATGCTGGTGGAGCAGTGCGCAGACTTCATCCGTCAGTGGGGCCTGAGGGAAGAGGGGCTGTTTCGGCTGCCCGGGCAGGCCAACCTGGTCAAGGAGCTGCAGGACGCCTTCGACTGTGGCGAGAAGCCATCCTTCGACTGTAATACGGACGTGCATACGGTGGCCTCCCTGCTCAAGCTGTACCTGAGAGAGCTTCCAGAGCCTGTCATACCCTTCGCCAAATATGAGGAATTCCTCTCCTGCACTAAGCTCCTCAGCAAGAACGAGGAATCCGGAATGAAGGAATTGCGAAAACAAGTCGAAAGCCTACCTCCAGTCAACTACAATCTGCTGAAGTATATATGCAGGTTTCTTGATGAAGTTCAGTCCTATTCAGGTGTGAATAAAATGAGTGTTCAGAACCTGGCGACTGTCTTTGGGCCCAATATCCTAAGACCTAAGATAGAAGACCCTGTAGCTATTATGGAAGGTACTGTGCTGGTCCAGCAGCTGATGTCAGTCCTGATCGGGAGCCAGGACGTGCTCTTTCCCAAAGATGAGGAAAGCCCCACGGCCCTGGAGCTGTGCAACAACAACAACGAGGTCAACAGGAAGCCCTCGGTGGGTCAGCTCCAGAACCGGGAGAACAACAACCCGGCGGGCGTGCGGCAGTGCTCCTGGGAAGCGCCCGAGTCGCCCAGCCGGGCGGCGGTGGACAACGGCTCGCCCGGTCCGCTGGGGGGCCAGCGCTCCGGCAGCCCGCGCAACGGCCTCGCCGGCAAGTTCGATCTGACCCGAAGCCCGCCCCTCACGGTGAAGAAGAACCCGGCCTTCAGCAAGGGCAGCGGCATCGTCACCAACGGCTCCTTCAGCAGCTCCTCGGCCGACGCCCAGGAGAAGAGCCAGACCCTCCCCGGCACGGCCACCCAGGCCCGGCGCGCGGCCTCCCTCAAGGGCCCGGGCACCAAGATGGGCACCAGCGGCGTGCCCAACGGCGGCGTGCGCATGGGCGTGTCCAGCACCGACGTGGTGAACGCGACGCTGAGCGGCCGCAACGGCCTCTGGCTGCCCAACGGCTACGTGACTCTGAGGGACGGTAAGCCCAAGGACTCTCTGAGCGAGCAGGCGGCCCAGCAGAACCGGCTCTCCACCTACGACAacgtgcagcagcagcagcagcagcagcagctctaCCCCGGCGGCGGCGTGTGCGAGGACAAGCAGAGCGTGGACAGCGCCACCTGGTCCACCTCGTCCTGCGAGATCTCGCTGCCCGACAACTCCACGTCCTGCCGCTCGTCCACCACCACCTGCCCCGAGCAGGACTTCTTCGGGGGCCACTACGAGGACCCCGTTTTGGACGCGCCCGCGCACCGCGACCCCGGCCAGCAGCAGGGGGAGTTCGGCCCCGAGGGGAAGGCGGATCGGAGGAACGGCGGGCGCGGGAGCCGGGCCACCAGCAGCAGCGAGAACAGCGAGACGTTTGTGGCCAACAATAGCGCCAGCAGCCACAGCGCCCTGCACAGTCTGGTGGCCAGCCTGAAGCAGGAGATGCACAAACAGAAGACAGAGTACGAGGCCAGAATAAAGAGcctggaGCACAGGAATCTGGAGTTGGAGACGGAGATGGTGAACCTCCACGAGGAGCTGGACCAGGAGAGGAAGAAGTACACCATGGTGGAGATAAAGCTGCGGAACGCCGAGCGGGCGAAGGACGACGGCGAGAAGAGGAACGAAACGCTGCAGAAGGAGATGGAGCAGTTCTTCTCCACGTTCGGGGAGCTGACGGCGGACCCGCGGCGGCCGGAGAGGGGGAACAACACCATCTGGATCCAGTGAGGAGGGACCATCTGAGCCAAAAAAAACTAGCTGACTGTTGCATTGTGGGTAAGGGCCATCAGGGAGATGATGCCTGAAAGAGACTAGCATTCTTACATCACGGACTCCTTGAAGACAAAAGAACATTtatcgcctttttttttttttctttaatgtggTCCTACCAAATATATAATCCCACTCTGTTACTGTTAAGTGTTATTCTGTGTCTGGTTGTGTATATAGAGGAAAACAAATGTCGACAACTTCGAGAAAGATATGTATGTAAAAGAAATTAACTAAAGTAATATTTTAATGCAAGTCTGGTATTTAAACAGAATTATCAATGTGTCGCATTTAAATTTTATATCAAGGCTTTTCCTTGCACTTATCTTTTTTTCCAACGTGGTACTGAATGAATCTGCGTATGCTGATTTTATTTTCCGTCTTTCTGTTTCAGTCTCCCttttaatttaaatgaataaCTCGTGGCTATGCTCTACTTGCCATTTGACTCATTCCGTGACCAAAAAGAgacataaaatataaatattttataaaatatgtcAGACACCATGTCTATCTTTTTGTTGTCTGTGCTGATAAAACTCATTCAGACACACCCAGTCTTAATATTAAGACTATGTAAAATATAGTCATAATATATTGAATGTACAACTATCCATTCAACTGGCTATTAGTATTTTCAGTCAGTAAAGGTTTGGGGTCAGTGTAGAATGTTTTTAAGTTGTAATCTTGATGCCAAGCTTAGTGATGACTGAATTATTACATTCAGTGGAGGATTATTGTAACAGTCATTGATAAATACGGTTCAATACAGTTTATGTGTGTGAGATACCTTGAATAAATTATTtacactttatttttttccccaaaatcaccaggtttgccacaataccACACAAAGCATGTGGTTCATGATCTTATGAAATTAATATTATAGTAAGTGATTCATGAAGAGCCACTCATAACTTTATAAAAGCTTAAGCCAGAGTCAAGCTTACTGACAATTTCAGTGTTACTTTTCATGGTGTTATGAACAAATATGTTTGGCAACGGAAAACTGTAAGACTTGTTTAAAATGTATGAATCAAATTCAAAGATAAACCGTACTATGGTTGGATTGAATATGGGCCATAATGTCCTTTGGTGAGAAATCGTATGTataatttataaataataat

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00169	PH	PH domain	Domain	Interproscan
PF00620	RhoGAP	RhoGAP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000198	Domain	Rho GTPase-activating protein domain	Interproscan
IPR001849	Domain	Pleckstrin homology domain	Interproscan
IPR008936	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR051025	Family	Rho GTPase-activating	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15228	SPERMATHECAL PHYSIOLOGY VARIANT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0005925	Cellular Component	focal adhesion	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0035021	Biological Process	negative regulation of Rac protein signal transduction	Interproscan
GO:0035313	Biological Process	wound healing, spreading of epidermal cells	Interproscan
GO:0090630	Biological Process	activation of GTPase activity	Interproscan
GO:1900028	Biological Process	negative regulation of ruffle assembly	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-