Gene detail

Detailed information of SKAU_T00356190 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00356190	RAS-RELATED PROTEIN RAB	CM056392.1	6533914	6583707	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00356190

TATCGAGGTTGGCAACGTTCGGAAAGGGCGCTAGGACCCTGGTTGATCACAGCAACCAAGTGTTATACGTTCAAGTGTTGGCGAGCTACACAAGGAAGAAGGCAACATGCAGATCGAAAGGGTTGTGTGAGGCTTTGAAGATGAAAATGCTTCAGCGCAGGGGAGAAATGGGCTAGGCAGACACCTGCAAACAAGAATTGTGCCTCATTTTATTGTTATGTTCTGCGCAGTCAGCACTATGACTGATGGTGACTATGATTATCTCATCAAGCTCCTAGCTCTGGGAGACTCCGGAGTGGGAAAGACCACGTTCCTCTACAGGTACACCGACAACAAGTTCAACCCCAAGTTTATCACCACAGTGGGAATAGATTTCAGGGAAAAGAGAGTGGTATACACGGCAACCAACTCCAATGGAACCACAGGGAAGACCTTCAAAGTGCACCTTCAGCTCTGGGATACGGCGGGACAGGAGAGATTCAGGAGTCTCACTACGGCCTTCTTCAGAGACGCCATGGGCTTCCTGCTCATGTTCGATCTCACCAGTCAACAAAGCTTTCTTAATGTCAGGAACTGGATGAGTCAGCTCCAGGCCAACGCTTACTGTGAAAATCCAGACATAGTATTAGTTGGCAATAAGGCAGACCTGGCTGACCAGAGAGAAGTGCAAGAGAAGCAAGCGAAGGAACTAGCAGACAAGTATGGGATCCCTTACTTTGAGACGAGCGCAGCCACGGGTTCGGAAGTGGACAAGGCCGTGATCACACTTCTGGACCTGGTGATGAAGCGCATGGAGCAGTGTGTGGACAAGCCCGCCCAGGACGCGCCCAACGGGGACGGCGCCAGCAAGCTGGAGGCTCCCCCTTCCAACGAGAAAAAGGAGATGAAGATATGGGCACCTTCTGTACTGACCGCCAACAATGACAAGGAGGTTAATGTCACTAGTTCCCAGTGGACAACCGAGTAGTATTCACCCGTAAACCGCTCACGTTTTTACTGTACTATTGCATAGCATGTGGATTTATTTTTCCTATTACAACTTTGAGCAAACTGATTACACGATTTAAGGAAAGGAAAGGTCTACAGTTTGCTTACTGTCGTTTGAACTTTTTTGAAAGTTTACATTGTCTGGAGGACTCTCTCTTTGCTGTTGCGTGCCTGTAATGCTCTTTGACCAACAATATCCTGTATAATCCTTTGTATAGGTTGTGAactattaaatattttaatgcaGAAAAATACTAAGCtaaactatatatatacagtacatatacgtacgtgcatatatatatatagagagatgATACATAGACATAGATATATGTAACTAAATAGCAAGTTTGAACTGGTATCTTGAAGagcattatttttaaaaaaatgttccatatgtattggaaaaaagaaaacatgctTTAAGTATTGACATGCCTGCGAGTTCTTAAGTGTGCGCACTAATGACATTTTGCCAGGTTGCTAGATATTTCAATGCAACATTAGCATGACCTAACCTGGGAGTGAGCTTTGAAATAGTCAGTGTTATGATGTTTGTGGGGTTTATCAGTGTGTCTCTTCAGAAAAGTCcagtctctctgtttctctctggaGCTACTGAAACTGAAACTGACCATTAAGGATAAGGCAAGCTGCACATAAAATGACTAATGCAGTTAGCTTGATCTTATTAACTTGATTGAATgatgttttgtggaaaatgtcGGCTTTTACCCCCTCGTTTTCGTTTTTTGAggctgttttgtgagatgatttAGTTTGATGTGGGTTTAGCTAGATTATAATTATgtttggattttttattttttttggtgacacactaaaaatgatttctttctttttttaaactcaaaTAAAGTTTTAAACACCACATGGTGCTTTATCAAGCGGAGACTTTGTTGTGTCTACTATTTAtggtttaaaatattttaaatgcttaTTTTAAGGTCAGAAGGTGACACGGGTTGTTGGAAGTTTGCTCTAATATGCGATGTTGTAAAACGCAATGAATTCGTTTTTCTGAAGATATTCTATAAAATTAATTCTATAAAATGATTAAATCTAA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806	Family	Small GTPase	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR041837	Family	Rab27a/b	Interproscan
IPR050227	Family	Ras-related protein Rab	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47977	RAS-RELATED PROTEIN RAB	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005794	Cellular Component	Golgi apparatus	Interproscan
GO:0006887	Biological Process	exocytosis	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0030141	Cellular Component	secretory granule	Interproscan
GO:0042470	Cellular Component	melanosome	Interproscan
GO:0045921	Biological Process	positive regulation of exocytosis	Interproscan
GO:0070382	Cellular Component	exocytic vesicle	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-