Gene detail

Detailed information of SKAU_T00356040 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00356040	DEP DOMAIN CONTAINING PROTEIN 5	CM056392.1	5902069	5918531	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00356040

Transcript

SKAU_T00356040

ATGACAGCCCCTCAGGTTTTTGAGGACAGCAGCCCCCTGTACTCAAgaggtctggTTTCACGGCgcagggcagaggaggaggagagccttTATTGGCTGAGTATGGGCCGTACTTTCCACAAGGTCTGCCTGAAGGATAGGATCATCACCGTCACCCGCTACCTGCCCAAgtacCCCTATGAGTCGGCGCAGATCCAGTACAGTTACAGCCTGTGCCCGCCCCACTCTGACGCAAACTTCATGTCCTGCTGGGTGGAGTTTGGCCACGAGAGGCTGGAGGAGTACAAGTGGAATTACCTGGACCAGTACATCTGCTCTGCCGGCTCTGAGGACTTCAGCCTGATCGAGTCTCTGAAGTTCTGGCGCACGCGCTTCCTGCTGCTGCCTGCGGGGGGCGCTCGCAGGGTGGCGGAGGTGGAGGGGCGCTGGGACGTGTACGGAGACGGCCCCGGGGCGGGTCGTGAGGGGGCGGGGGACTGGGCCCTGCTGGACGGCTTCATCCGCTTCCTGGAGGGCCTGAACCGTATCCGCCGGCGACACCGTTCTGATCGCATCATCAGGAAAGGGGCAGCCATGAAGGGGCTGCAGGTGACAGGTCCCCTGGCGGTGTACCCTCCCGAGCCCACAGCGCCCCCTCAGGGCAAGAAGGGAACCTCGGCCCTGTCGGCTCTGCTGGAAATGGAGGCCAATCACAAGAGTCTGGAGGAGCAGCAGGCCGCGCTCTTCACAGGAAAACCTACCGTGCCTCCTAACGACTCCTCGGCTGTCGCCATGACGTCCTATGTGGACAGCCCCCGGAAGGACGCCGCCTTCTTTTTGGACTTTGTCCGTAGTCCTCGCTCGTCCTACATCTATCATTCTCAGATGCCAATCGATCAGGCAGCGGCCAATCCCGCAGAGGGTGGAACAGCAGACAAGGGGGCCGCCCAGGGAGGGGAGCGATCCATTGCGACAGGCTCCACCTACACTGGACCTGGTTCTGTCACTCAGATGACAGGGGAGGTGGCGGCAACACCTGGGGTTGTCACAGAGACCAGTGGGCAGTCTGGTTCTGGAGGCTCCAGTCTGTCGTCATCTTCCACTCTGATGGAGATCCTGGAGGCCATCAAGCACCCCACCACCGGAGTGCAGCTGTTATCTGAACAGAAGGGGCTGGGCCTCCACTGCTTCATCAGTGCAGAGGTCATCCATTGGCTGGTTAGCAATGTTGAGGGCGTGGCCACACAGGGCATGGCTGTAGACGTCATGCAGAAAATGCTGGACGAGGGACTGATAGCACACGCATCGGGTGATGCCATGCGCACCTTCGTCTATGGCTTCTACTTCTACAGGATCGTGACCGAGAGAGACAGTGAACGGGgCCAAGCGACCCAGCTTCCCTCCGCGGGTGCAGGGGTGTGGTCGACGGCGGCTCTGGAGGACTTCGCCCTGTTCCAGAGGAAGTGGTTCGAGGTGGCCTTCCTGCTGGAGGAGCGTCGGCCCTGCGACCTCCCTGCCTTCCTGTTGCCGTGGCTACCCAGCCGGCCGGCGTCGTACGCAAGTAGGCACAGCTCCTTCAGTCGCAGCTTCGGAGGACGCAGCCAAGCCGCCGCACTGCTAGCCGCCAGCGTGCCCGACCAGAAGACGGCGACGCTGGACGTGGACGTGAACAACCGCAGCAACCGCACGGAGTGGTGCAGTTGTTATTACCACGGCAACTTCTCCCTCAACGCCGCCTTCGAGATCAAGCTGCACTGGATGGCCGTGACCGCCGCCGTGCTGTTCGAGATGGTGCAAGGCTGGCACAGGAAGGCGGCGTCGTGCGGCTTCCTGTTGGTTCCTGTCCTGGAGGTGCCCTTTGCCCTGCCCTCCTATCTCTATGGCGACCCTCTGCGCGCCCAGCTATTCATTCCCCTCAACATACAGTGTCTGCTCAGAGACAGCACTGACAACCTGTTTGAGGGTTTCGAACCCGAGACGTACTGGGACAGAATGCAGCTGTTTCAGGAAGCCATACTGTACAGGTTTGGGTTCGTTCAGGACAAGTTCTCAGCCTCCGCTTTCAATTTCCCCTCTGAGAACAAGCCCCAGTATATCCATGTAACAGgcacggTGTTCCTGCAGTTGCCGTACTCTAAGCGCAAGTACTCGAGCGGTCAGCAGCGCCGGCGGAGGAACTCCACCACCTCGGCCACGCAGAGCCTGTTCGCCGACGAGCAGGCGGGCTACAGCTGGGCCTACAACACCATGCTGACCAAGGCGTGGCGCACCAGCGCCCTGGGGGACGAGAGGCTGGCCGACCGCCTGCTCCGCGACTTCACCGACTTCTGCGCCAACAAGGACGGCCGCCTCGCCGCCTTCTGGGACAGCTGCCTGGAGAAGATGAACGCTAGCGCCCCCTGAAGGCGAGCTTGTGCCAATCCCTGGGATACCTGCCTAGAGAAGACGAACACTAGCGCCCCCTGAAGGACGGGCTGTGCCAACCCCTGGGACACCTGCCCGGAGAAGACGAACGCTAGCGCCCCCTGAAGGGCGTGTGCCAACAACggctaaaaataataattaactgCTGCACTTCAGTCCCcgccccctaaccccaccctaaGTCATGTGAATAAATATGAAGGGTAATTTATCCAACTGCTGTTTTGAGCGTCAAAATATTTGTACAATTCCATGATATAATAATCTTTTTGAGCAAAAGAGGCTATCATATTGGGATTGTGTACGGGCTTGTTCCAGCAACCGTCGACGAGCGATATCCAGACCAACGCTGAAAATTACTGTGACGGTGCGCTTTTGTGTGAACTAAATCTTTTATAAATGCGTAGGTTTAATCTCTTTTTAATTCCTTTGTTTTTTCGAATCCTTGTGATTTTCTTTTCTCCTCTTTGGGTCTGTTCGCTTTTTTTTTGTAACCGTTTCTGTGCTTTTCCCGCCTTTTTCTCCCGACGGTATTTTTGTCCACGTTCTTTGCCGCCCGACTTACCGCTGTCGATTCAGGCGAGTGTAGACGAGATTGCGCTCTCCTCTGAATGCGGTGACAGCCGTGGCTCCTCATCACAGCGCAGTTTGCGAGTCGGGCGTGCTTTGTTTATAGCTCCACAAGTGGACTTGCAGTCCTccaatcaaccagcaggggtcgctgttgTGTTTTCAGAGAGTCATCCCGGTTGAATGAAACCCTCCCGTCCCTGGGAGGCTCTTTTTGTGCCCCTTTTTAAAAAGTTAACTTCATAATCTGTTTATGAAAAGTACAGGCCCTGGCAGCAAGATCAGCTATAAAGAAAATGTACAGGCCCTGTAGAATCAGAAATTTTTTTTCGTACTTATACACAAATGAACCAAAGAATGCAAATGCAATGTTAAGCTTATTTACCTCCATgggattttaaatattttttttttttaatcctgaaaGCAAGTTATTCGAATTTATGCAAATGCTTATTTGGTATTGGTTATTTGTAGAGCTTTTTGCTTGTGTGAGTAAACATgccaatttacattttaaagaatCAGCGATGTGACTGGTTAGTGGTTTGCCCAATCAGAATTGACCTTGAGTTGAATGACCGTACAGAATGAAGACGCTTCATCACACGTCCTGCTCTTGTGTTCAGGAATGACATACTTTACATGAAaagcaaatgttattttcttgCTCATAAATTTGGAAACAGGAagtatacatatattttatggtTTAATGAACATGATAAATTAAAGGGAAAAGGCAGTTGCATAGGGTCTTTACTGTGAACACACGCAGAAACGGAACCCAGTGTGTATGGAAAATAAGTTTCATAAATCCATATTGTTTAATAAaagaaataccatttaataaatCACTCCTATGAAGAGCTGAACCAGCAGAAAGCTTTGTATTGGTCCAACCTCCTTGTGCGGATGATTTATCAAACTgtactgaattattatttttacttttgtTATTTTTGGGATGTTTTTGCCTGTGGCTCTCTGTATTTTGTTCCAAATTTGAGGCACCCAGTCTTGTCCATAGGCCCCTTCTATTGCTATCAGTGCCCCTCTGACTATACAGGAGAGGGCAGaagcagtcccccagctgagctgcacggCCAGCCTACCAGAGAACTGCAGTTTCTGTGCAGCTGGCGCAGACGGACTGCAGGCA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00610	DEP	Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)	Domain	Interproscan
PF19418	DEPDC5_CTD	DEPDC5 protein C-terminal region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000591	Domain	DEP domain	Interproscan
IPR027244	Family	Vacuolar membrane-associated protein Iml1	Interproscan
IPR036388	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR045838	Domain	DEPDC5, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13179	DEP DOMAIN CONTAINING PROTEIN 5	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0005765	Cellular Component	lysosomal membrane	Interproscan
GO:0010508	Biological Process	positive regulation of autophagy	Interproscan
GO:0034198	Biological Process	cellular response to amino acid starvation	Interproscan
GO:0035556	Biological Process	intracellular signal transduction	Interproscan
GO:1904262	Biological Process	negative regulation of TORC1 signaling	Interproscan
GO:1990130	Cellular Component	GATOR1 complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-