Gene detail

Detailed information of SKAU_T00356020 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00356020	BRCA1-ASSOCIATED PROTEIN	CM056392.1	5865231	5880104	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00356020

ACCGGATGTTATTTCCGCTCCTTGTCGCTCGCTCTGCTGGTATTACACAGTTTTGATAGTTGTGTTTACATGTATATGAGGGGTCTGAATGCTGGTTAGCTAGTTAACTGCTAGCTCAGCGTCCTTTAAAACAACCTCTTTTTCTGTCATTAAGCTCGCGTGTGTGGTGTCGTTTAttggttgtttttgtgttttgttggggggttttttgcttaattttttacagtaacgttagctagcttgagGTGTCGTCATATTAATATTAACACATGAGTGTGTCACTGGTTGTGATCCGTTTGGAGCTTGCGGACGAGTCTCAGTTTCCACAAGGTTTCCAGTACACTGCTGCAGACATGGCTGACGAGGAGTTCAAAGAGAGGGCCCTGTGTTCTGCCACGGCCGCCCTGAACGGCAAATCGGACGTGGACCGGACGTCCGTCCTGCACCAGCACATCGGGAGCAGGGCTATGACGGATATGGTCATCGAGACGTTCAACCGCAGCGCAGATAAGAGCGGGGGTCCGGACTCCCTGGACCCCGGCGAAGGGGAAGAGGCCAGCTCCCAGTCCCGGGGTAGCCCCGAGCCCCCGGAGGACCGGCCCGGCAGCAGGGGCGCCAAAGACGCAGCGGACGGGGTCACTGCGCCAGACTCGCCGTCCAAGCAGCTGCCCGACCAGATCTCCTTCTTCAGCGGCAACCCTTCGGTGGAGATCGTCCACGGCATCATGCATCTCTACAAGACTAACAAGATGACATCACTGAAGGAGGACGTGCGCCGCAGCGCCATGCTTTGCGTCCTGACGGTGCCCGCCGCCATGACCAGCCACGACCTCATGAGGTTTGTGGCGCCTTTCAACGATGTCATGGAGCACATGAAGATCATCCGCGACTCCACGCCCAACCAGTACATGGTGCTGATCAAGTTCAGCGCTCAGGCCGACGCCGATAGCTTCTACACCACCTGCAACGGGCGGCAGTTCAACTCCATTGAGGATGCGGTCTGTCAGCTGGTCTACGTGGAGAGGGCGGAGGTCATCAAGTCTGAGGAGGGAGCCAGCCTGCCGGTGATGGACCTGACGGAGCTGCCCAAATGTACTGTGTGTCTGGAGCGCATGGACGAGTCGGTCAACGGTGTGCTGACCACCCTGTGTAACCACAGCTTCCACAGTCAGTGCTTGCAGCGCTGGGAGGACGCCTCGTGCCCCGTCTGCAGGTACTGCCAGACCCCTGAACCCGTGGAGGAGAACAAGTGCTTCGAGTGCGGCGTGCAGGAGAATTTGTGGATCTGCCTGATCTGCGGTCACATCGGCTGCGGGCGCTACGTCAGCCGCCACGCCTACAAGCATTTTGAGGAGACGCAGCACACGTACGCCATGCAGCTGACCAATCACCGCGTCTGGGACTACGCCGGGGATAACTACGTGCATCGGCTGGTGGCTAGTAAGACAGACGGTAAGATGGTGCAGTATGAATGCGAGGGAGACTCCTGTCAGGAAGAGAAGATCGACGCCCTCCAGCTGGAGTACTCTTATTTGCTGACAAGCCAGCTGGACTCCCAGAGAATTTACTGGGAAAACAAAATCGTTCACTTGGAAAAAGACACGGCAGAGGAGATAAACAACATGAAGGCCAAGTTCAAGGAGACGATTGAGAAATGCGATAATCTGGAACGCAGGTTTGGGGACCTGGTCAAGGAGAAGCAGTCCATGGAGAAGAAATGCAACCAGCTGAGCTCCAGGGTGACTAAGCTCTCCCAGGAGCTGCAGGACGAGCAGGAGCTGAACCGCTGTCTGCGGGCGAACCAGTCGCAGCTGCAGGCGCAGCTCCGGGACGAGGAGCGGCAGGCGCAGGAGACGGGCGAGCGCAAGGACGGTCGCATCACCGAGCTGCAGGAGCAGCTGCGCGACGTCATGTTCTACCTGGAGACCCAGCAGCAGATCAGCCAGATGCCCGCCTCCGCACGCCAGGAGATCCAGGAGGGCCAGATCAACATCGCCTCGGGCCCCTCCCCCTCAGCCCCCGGCAGGCTGGGCGGCAGGAAGGGGCGGGGCAAGAGAGggaagtaaaaaaatttaaagaaataaataaaacaacaataataaaatggaCTGGTGTGtgggaagaaaagaaaaagaggaGGACTGTGTTGAAAGGAAGAGAGACCCATCTCTCCACCCTCGCCcctccacacaccaaaaaaacTACTTTAATAAGGACGGGGTTTTTCCCCCAACACTGTTCATCTTTTTCAAATAAAGTTTGATGTCTCTGTGGGAGGAGCTAGGGgtggattagtgcaaggaaagatGATGGTGTTGAGTGGTATAGACCGCTATAACATCCCCTGTTCTCccagacacatacatacatgatGGATTTCCCCATAGGCACAGTATTGACGTGTAattctctctctatcctctctGTCGCCTTATCGTAAGTCAACTTCTCCTGCTGGCAAACATGAATCAGCGGGAAAACACCCGCGAGGCGTCCGTTTGGCCCAGGCCTGGCCTGGTTTTTTCAGACCAACCTTAAGCCTCGACCATTAGCCACTCTTCTAGGATGCTTTCTCACTCTGCCCCTTtctcttcttcctctctcttctctctccatctctctcctctccatcactctctccccttatggaaatgtaatatactgcagtatattttaaatatattgtgacgataattttgatatatttacaatatactgcagtatattatttttccataagggtctgTTCAGTATTTGTCTCCATGGCCCAAGCTGTCCCATATTTATTCACCATATTTTTGAGTACATGTACATACGTGTGTgatagggagggggggaggggacaAAATGCCAGAACGGCACTGAACAACAGAGTTTATTCTGGATTCTTCCCGAGTAATCAGGAAACACATTTTTCAGACCCTAAATGTCTGAAACGCTTCAGGGACTTGGGCATGTAacccacacacacatcacagagctTTTAACACTTCAGCTTGGTAAAAAAGCCTAATGCTAATGGAACCCAGAGACATTTAGGTATAAGAATCCATATTTCCTTGATCAATCTGGAACCATCTGGAAAAATCCCATCCCTGAGTAGTTTATCCACTTTGCGTTtgaaaacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgatataggagGCAGGACGGGAACACTGCAAATATTCTGAACAACTTGCAGTCAAGCCTAGGTCTCAAACAGGATAGTGCAATGATTAGTGAACGATCTTAGATAAGACACTGATGCGCGGTCTGAATTCTCCGCCAAATATCAGAGAGTGTGCAGCATATGCTACTTCTAGTTGCTTctttcaattatttttttttttttgttgtctgttGATTTTCTATAAGGAATACTGTTATCGGCGGTGCCTTTTCACTAATAGAAATACAAGTACAGGGGTTCATATTTTTTTGTTGTCACTATCAGTGAAAGTGAATCTGTTTTCCAGTTCCAGGATTttaaatgctaattagtctgaaGGGTGAATATAAAATTGTAATACATATCTGTTGATGGGACACAAACAACTGAAGTTTATGTAACTTTGCTCATCTTTGATTTGCTTTTTGTCCGCACAAATGTCCACCCGATCCATCCCGTTTCACTCACAAAAGGCTGCCATTTCTGGGAGATGTTTGTGCAGTGATGTCAAACCAATCAGCATCTGTATAAAATCTCAGTCAGATGCCATCTGATCTGTCTTTAGTAAGACTGGGCTCGGGAGTATGCCTACTGGACTACAACTCCCATGTGTACCTCAGTAAAATAATTTGCATTATGCTTTGCTTCTGAAATCCACCCTACTGTTGTACTTTGTGTGAAAATCAGCACAGGTAATCCGAGTTGTTGGGCTATGTGGCTTATGTTACCTCAAAAGAAAACACCCCaaatgccatttatttttgttgtttactgttgttaaattatttgtttttttttaagcagtaccataatttcatagtttagcagCCCAGTTGAAGATGTAGGCTTAGAGGTATTTAAATGGAGATCACTGTCTTTCCTGATGTTTTTGTCCAGTGACCACTCTCAATCTATGAAGTGTTCAACTTCagcatatatatttaatataatattaaaaacacattaaaaaaaatatgtattttactaGGTGGTAATTAGGCCTCATCTCTTTGACCTCTGCCTTTTTTGTTGAAACATATGTCTTTTCACAGGTTTCTCTGTTAAATGAATGGCAAACATTAACAGACAGCCCTTTCAAGTcttctgtgtatttattttgttcagaaaagaGAACTGTGTTCACAAATGTGCTCATTTTCCAGGACTATAAACGACATTGCCCTGAAGGCCTCAATAAATTCCGAGTTCAGCT

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING
Ubiquitin Family	UBD\|ZnF\|ZnF_UBP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02148	zf-UBP	Zn-finger in ubiquitin-hydrolases and other protein	Domain	Interproscan
PF07576	BRAP2	BRCA1-associated protein 2	Family	Interproscan
PF13639	zf-RING_2	Ring finger domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001607	Domain	Zinc finger, UBP-type	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR011422	Domain	BRCA1-associated 2/ETP1, RRM	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR034932	Domain	BRAP2, RNA recognition motif	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR047243	Domain	BRCA1-associated protein, RING finger, H2 subclass	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24007	BRCA1-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007265	Biological Process	Ras protein signal transduction	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-