Gene detail

Detailed information of SKAU_T00351840 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00351840	JNK-INTERACTING PROTEIN 1-LIKE PROTEIN	CM056391.1	26441632	26487405	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00351840

ATGTGCCCGACTGAGGGACGGATTCTGGTTGCCGCTGTCAGATTGGTACTGCAGATAGAGAGGCTGACCCATGACATCAGCCTCGATGAGTTTGAGGACGAAGACCTCTCGGAGCTCACAGAGATCACTGATGAGTGTGGGGTGAGCCTCAACAGCAACGGTCTCGACATCAAGGGCCATGTGACGCGGGGAGCCAATAGCGGGCCAGGGAAGTCGGAGGGGAGCGTGGCCTCCAAGCTGCAGACGGAGATGCTCCATTTGGAACTGATCGATGCTGTGGATGACATACAGGACGAGGAAGCTGTGCTGCCCACCGCCAAGCCCCCTGTGAAAGAACCTGCTCCTGTTACCATGGATACCTACCGGCCCAAGAGACCCACCACACTTAACCTCTTCCCACAGGTGCCTCGGACTCAGGACACACTAAACAACAACTCATTCGGTAAGAAGTACAGCTGGCAGGAGAAGGTCAGACATTCTTCCTCCCCCCTGAAAACAGCGGAACTGACGCCGACGCATGAGCACATCTGCCTGAGCGAGGAGGGTACGGCGCAGCACGCCGGCAGCACGCACACCAAAGACAAAGGCACCTCCACGGACGGCCCCTGCCGAAGGACCTCTTCCACGCAGAGCAGCGGGGGCACGCGCTCCAAGCTGCAGGACAAGCCCCCGGCGGCGGCCCGCGCTCAGTCCCCGGCGCAGGCCTCGGGGGTGGCGCACCGCGAGCGAATCCGCTACCACACGGACGTGCGCCTGGAGCCCACCGAGGAGATCTACCTGACCCCCGTGCAGAGGAACTCGGACCCGCTGGAGCAGGACAGGCCTTTCCTCTCACAGCCGGGAGAAAACAACCGCATGTCCATCAGCTCGGACGCCGAGGGACCCCCGCCCTACCAGCCCCTCCCCGACCGGACGAACCCTTCCATCAGCGAGGAGGACGAGGTGTACGCGCCCTCGTCCTCCTCCACAGCTGCCGCGGACCTAAGCGCGagaggggcagggggcggggccgggggcggggccggggcggTGTTGGCTCCCTCCGAGGCGGGAGTCCCGCGGACTTCCATCAGCTCAGAGGCCAGCGGGCTCTCCTACGACTCGGTCAAATACACCCTGGTGGTGGATGAGCACGCCCAGCTGGAGCTGGTCAGCCTGAGGCAGTGCTACCAAGGCTACAGCGACGACAGCGACTCGGCCACCGTCTACGACAACTGCGTCTCCTCCCCCTACGAGTCAGCCATCGGCGAGGagtacgaggaggaggaggaggagggcggcGGCCTGAGACGGGACGCCCCCTGTCTGTCGCAGGACTCCACCCCCGAGGCTGATCTTCCCATCTCGCGCAAGTTCCTCAACGTCTTCATGAACGGCCACTCTCGCTCTTCGAGTGCAGAATCCTTTGGTCTGTTCTCCTGTGTAATCAACGGGGAGGAGCGGGATCAGAGTCATCGAGCTGTGTACAGATTTGTCCCTCGCCATGACGACGAGTTGGAGCTTGACGTGGATGACCCACTGCTGGTAGAGGTACAGGCAGAGGACTACTGGTACGAGGGATACAACATGCGCACCGGTGCCCATGGAATATTCCCTGCCTACTACGCCATTGAGGTCACCAAGGATCCTGATCAATACAAAGTGAAAAGCTCTGAATGGGTGGACACATTCCGGGtgaaatatctgggctctgttcAAGTTCCGTATCACAAAGGGAATGATGTTCTCTGCGCGGCTATGCAAAAGATTGCAACCAATAGAAGAATGACAGTGCAGTTCAACCCTCCCTCATCCTGCATACTGGAAATCAGTATGAACGGTGTGAAAATTTGTGTTCAAGATGACTACAGCAGTTTTAGCAGAGGAAATAAATGCAGTCACTTATTTCAGCTGAAGAACATCTCCTTCTGTGGTTATCATCCGAAGAACAATAAGTATTTTGGGTTCATTACAAAACATCCAGCAGATCAGAGGTTTGCTTGTCATGTCTTTGTGTCAGAAGACTCGACCAAGCCTCTGACAGAATCCGTAGGGAGAGCATTCCAACTGTTCTATAAGGAATATGTCGAGTACACATGCCCAACAGAAGACATCTACCTTGAATAG

Transcript

SKAU_T00351840

GTCTGTTGTCTGATAGTAGGCTATTCGTGTTAAGCGGATGTGCCCGACTGAGGGACGGATTCTGGTTGCCGCTGTCAGATTGGTACTGCAGATAGAGAGGCTGACCCATGACATCAGCCTCGATGAGTTTGAGGACGAAGACCTCTCGGAGCTCACAGAGATCACTGATGAGTGTGGGGTGAGCCTCAACAGCAACGGTCTCGACATCAAGGGCCATGTGACGCGGGGAGCCAATAGCGGGCCAGGGAAGTCGGAGGGGAGCGTGGCCTCCAAGCTGCAGACGGAGATGCTCCATTTGGAACTGATCGATGCTGTGGATGACATACAGGACGAGGAAGCTGTGCTGCCCACCGCCAAGCCCCCTGTGAAAGAACCTGCTCCTGTTACCATGGATACCTACCGGCCCAAGAGACCCACCACACTTAACCTCTTCCCACAGGTGCCTCGGACTCAGGACACACTAAACAACAACTCATTCGGTAAGAAGTACAGCTGGCAGGAGAAGGTCAGACATTCTTCCTCCCCCCTGAAAACAGCGGAACTGACGCCGACGCATGAGCACATCTGCCTGAGCGAGGAGGGTACGGCGCAGCACGCCGGCAGCACGCACACCAAAGACAAAGGCACCTCCACGGACGGCCCCTGCCGAAGGACCTCTTCCACGCAGAGCAGCGGGGGCACGCGCTCCAAGCTGCAGGACAAGCCCCCGGCGGCGGCCCGCGCTCAGTCCCCGGCGCAGGCCTCGGGGGTGGCGCACCGCGAGCGAATCCGCTACCACACGGACGTGCGCCTGGAGCCCACCGAGGAGATCTACCTGACCCCCGTGCAGAGGAACTCGGACCCGCTGGAGCAGGACAGGCCTTTCCTCTCACAGCCGGGAGAAAACAACCGCATGTCCATCAGCTCGGACGCCGAGGGACCCCCGCCCTACCAGCCCCTCCCCGACCGGACGAACCCTTCCATCAGCGAGGAGGACGAGGTGTACGCGCCCTCGTCCTCCTCCACAGCTGCCGCGGACCTAAGCGCGagaggggcagggggcggggccgggggcggggccggggcggTGTTGGCTCCCTCCGAGGCGGGAGTCCCGCGGACTTCCATCAGCTCAGAGGCCAGCGGGCTCTCCTACGACTCGGTCAAATACACCCTGGTGGTGGATGAGCACGCCCAGCTGGAGCTGGTCAGCCTGAGGCAGTGCTACCAAGGCTACAGCGACGACAGCGACTCGGCCACCGTCTACGACAACTGCGTCTCCTCCCCCTACGAGTCAGCCATCGGCGAGGagtacgaggaggaggaggaggagggcggcGGCCTGAGACGGGACGCCCCCTGTCTGTCGCAGGACTCCACCCCCGAGGCTGATCTTCCCATCTCGCGCAAGTTCCTCAACGTCTTCATGAACGGCCACTCTCGCTCTTCGAGTGCAGAATCCTTTGGTCTGTTCTCCTGTGTAATCAACGGGGAGGAGCGGGATCAGAGTCATCGAGCTGTGTACAGATTTGTCCCTCGCCATGACGACGAGTTGGAGCTTGACGTGGATGACCCACTGCTGGTAGAGGTACAGGCAGAGGACTACTGGTACGAGGGATACAACATGCGCACCGGTGCCCATGGAATATTCCCTGCCTACTACGCCATTGAGGTCACCAAGGATCCTGATCAATACAAAGTGAAAAGCTCTGAATGGGTGGACACATTCCGGGtgaaatatctgggctctgttcAAGTTCCGTATCACAAAGGGAATGATGTTCTCTGCGCGGCTATGCAAAAGATTGCAACCAATAGAAGAATGACAGTGCAGTTCAACCCTCCCTCATCCTGCATACTGGAAATCAGTATGAACGGTGTGAAAATTTGTGTTCAAGATGACTACAGCAGTTTTAGCAGAGGAAATAAATGCAGTCACTTATTTCAGCTGAAGAACATCTCCTTCTGTGGTTATCATCCGAAGAACAATAAGTATTTTGGGTTCATTACAAAACATCCAGCAGATCAGAGGTTTGCTTGTCATGTCTTTGTGTCAGAAGACTCGACCAAGCCTCTGACAGAATCCGTAGGGAGAGCATTCCAACTGTTCTATAAGGAATATGTCGAGTACACATGCCCAACAGAAGACATCTACCTTGAATAGCCTGTCCTGCCCTCCCTGTACATTAATGTATATCATAATATGTTGCATGGtgggaaaaaataagaaaattattacaatgaacaaaaacattttgaagaCATTTGCTTTCTGGCCAAGTCATTTCCTTGAAAAAAAGATGCATATGCAAAGATGTTTGAGTTCTGTGACTGATCTTGTTCTCAACTCAAAGTGCAACACTGTAGTGTTGAAACTCCCTCTTGTGAGTGGACATatgacaaatatatatatttatttttcctgaTATTTAGCAGTAGGAACAATTAAACAAACTAAAGTTCAAGGTGTTGCACATTTCAAGGAAATTCTGAGGCCACAAAACAGATGTTTGATATCATGCCGCAGCGGTCAATTTTATCAGCTCTTTTGTGGTGAAATGATAAACATGAACTTATCAGGATAAACTAGAGATTTCTTTGACATCTGTATTTGTACGGGCAAAGAGACCAAAACATGTGGCAGAACTTTTGCATTTTTTGTCGCTTTATATGTTTTTCCCAAATGTGCATTTGTTCATGTTAGAAACCCATCTCTTGAGTTGGAGGTGGGCATATGCATAtttgttaaaatatgttaaaaagaAGCTGTCCTTGAAAGGCTTTATTTGAGGGAGTGATGGGCCTTTGTTTCTGAAATGTCCTTTCAGAACTGCAAGAACAGTGAGAGATCAACCGTTTCTCCTGTAGGTCCTCATGTCAAAATACTATGTTAAAAatcacacaaaaagaaaataacattttccagttttttttgccCAACAGAAAAAGTTAAATGTAGAAAATACAGATTATCAAGCTTTTCCATGACACTCTTCAGCTTCACTTGATGGACTGTAACTGAATTGAAAACTTAGAGGTCACTCACTCTATCCTGTTATGCGCAGTTGTTGTTGGATCAGATTTTGAGCTATTATATCGTGGTTCTTCACTCTTCGTTCCACTGAAGTTATAATGGCAAACCACATCGTCCTTCAACACCACACTTTCCTGTTTCCCCAGCAGATGGGACAGCTTTCCTCGTAACACATTTCATTCCCCCTGAATGATAACCCTATTGAAATAGTTTATTCAGATGAGACTTTCAAACAAAATCCCAGTATTTTGCTGGCTGCTCCTACCAGTATCAAAATAGTCACTTTTATACCATTGAAACAAACCAGTAACCATCCTGTCTGGATATTCAGTCAATCTGTTACTACCTGACAGATGTGCTATACTACAGATACTATCATTCAGCCCAAGGTTTTAACACACAATGAAGACCAATTAGTATCTTTTGAGTGTTTAGGTAAATTTCATTGTGATTCTGATGTTTTTGGTTTCAAAGAGTCATTAGGTATCCCTGTTTCTTTAGGGGAGTTCCAAATAACCTATTCTCTATCTAACACAAAAATGCATGACTGAGGTATGGTATGACTGGAATGAAATGTAGCTAAGGAAATCCTGTCCATAGCAGAGATGCTGACTTTATCTGGGAAGCACAAAGTGAATAAGACTATGTGTCTTTCAGATCTTCACAAGTAGTGCctattttttatcattatcattctgattactgtgtatatatatatttatatattttgtttattaAGAGTTATCATGGGGCTGTGGGAACTTCTGAAATGATTAGAGTTGGTTATCTAGACAGATGGTAGGCAATCTATGTATATGTCACCCAGAATAGGGAATCtaccaatttaaaaaataaataacattaaacCAACCACAGCATTTAAACAAGATGTGCAACTATTTCTTTAGGTAAACTAAATCTGATACATGCACAAGAAGGCACATGGCCATGCTGGCTTCTATTCAGATTCAATCAGTTGTTAGTCATTTTGCCTACAGAAAGTCTACTTAAATTTGCCAAAAGTTCCAGGTTCCAATACACGGCAAGGGAAGTCTCATGACTAGGTAGTAACATCCCAATATCAAAATCAGTACATCATAATCCTATTGGCAACCGTCTTCCTGGATCTGTATTGTTGTGATGGACTTGGCTTACAGTTCGGTGTGACAGCAGGTCCACTGCGAACGCAAGAGCCCGGATGTACAAAGAGATGTCTAAGAATGTTAGCATGCTGTCTATCAATTAAGGGACTTTCATTTGTTACGTTAATTTTGGGACATTGTTGTATATAAACTAAGAATTGATTTCAACCTCactaaaatgtaattttattagCCCTACTTTTAGCAGGATATTTTGCGCATTTTGTAATATAGCCATTATTCAAGTGGAAATAAAAATTTAGAAAATATTGCCAGCCCTTCTGCCTAGAGAATCACAATTGTCTTGATTCACTTGCCAGCAAAACTGACAGATGGGAGAGGTTTTCTTTGTATCAATTCCGTTTTAATTCCCCAAAGCCTGACataacacacaaataaacagTGACAAATAATTCATACATgtgaaacttttttattttatttatcttttttcctcatttaaaatatttcaaagCAGGGATATGTCTCCTGTCATTATTACAGGGCAATTACAGCAGTGAGTACAGGTAAGAAGATGCTTAGTAGTATTCCTCATCCAGGTTTGGCTCGTAGGCGTCCTGTCCATGCAGGAGGTAGGGTGGAAATCGAGGT

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|SH3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00640	PID	Phosphotyrosine interaction domain (PTB/PID)	Domain	Interproscan
PF14604	SH3_9	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452	Domain	SH3 domain	Interproscan
IPR006020	Domain	PTB/PI domain	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR047178	Family	JNK-interacting protein 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47437	JNK-INTERACTING PROTEIN 1-LIKE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005078	Molecular Function	MAP-kinase scaffold activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007254	Biological Process	JNK cascade	Interproscan
GO:0008432	Molecular Function	JUN kinase binding	Interproscan
GO:0046328	Biological Process	regulation of JNK cascade	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-