Gene detail

Detailed information of SKAU_T00350410 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00350410	NAD(P) TRANSHYDROGENASE	CM056391.1	20409971	20465131	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00350410

ATGGCTGTGGCTGATAATGCCGTGGAGAAGGATGCCACACGTTTTAATTCACTTTCAGAGGAGGAACGGCATGTGAAAGCTAATGACCGTGACTTCAACGACAGGTTTCTGTATGCGGCCAATCACATCAAAACCTCAAAATACAACATCTTCACCTTCCTGCCTATTAATTTATTTGAGCAGTTCCAACGTGTTGCCAATGCATACTTCCTGTTTCTGCTTATATTACAGCTTATTCCTCAGATCTCCTCTTTATCCTGGTTCACCACCATCGTGCCTTTGGCATTAGTGCTGACAGTAACTGTTGTCAAAGATGCTACAGATGACTATTTTAGGTATAAAAGTGATCAACAAGTCAATACTCGACAGTCTCAGGTACTCATCAGTGGCAAGTTGGAAAATGAGAAATGGATGAATGTGCGTGTGGGGGACATCATCAAGCTGGAGAACAATCAGTTTGTGACTGCCGATATCCTCCTCTTATCCAGCAGTGAGCCCTATGGACTGTGTTACATTGAAACGGCAGAGCTGGATGGGGAGACAAATTTGAAGGTGCGGCAGGCTTTAACAGTGACCTCAGAGCTGGGAGCAGATATCACTAAGTTGGCAGAGTTTGACGGGGAGGTCGTCTGTGAGCCTCCAAATAACAAATTGGACTGGTTCACTGGAACTCTTTTCTGGAAAGATAATAAGTATCCCCTTGACAATGAGAAGATGCTGCTTCGTGGTTGCATGCTCAGAAACACTGAGTGGTGCTTTGGCATGGTCATATTTGcagGGCTCCAAACCAAGCTGATGCAAAACTGCGGGAGAACAAAGTTCAAAAGAACCAGCATTGACAGGCTGATGAACACTTTAGTGTTATGGATTTTTGGATTTCTTACATGCATGGGCATTATCTTGGCTGTGGGGAACACCATCTGGCAGGAGAGGGTAGGCAGAACGTTCCGGGTGTACCTGCAATGGGACGAGGTTTTCAATGATTCTGTGTTCTCTGGATTCCTAACCTTTTGGTCTTACATCATCATCCTCAACACTGTGGTCCCCATCTCACTCTACATCAGCGTGGAGGGGATTCGCCTGGGACACAGTTACTTCATTAACTGGGACCGGAGGATGTACTATGGTCGGAGAGACATGCCGGCTGAAGCCCGCACCACTACGCTGAACGAGGAGCTCGGCCAGGTGGAGTACATCTTCTCTGACAAGACTGGCACCCTCACCCAAAACATCATGGTCTTCAACAAGTGCTCCATAAATGGAAAGACCTATGGTGAGGTCTTTGATGATTTTGGACATAAAGTGGAAATCACAGAGAAAACTCCATGCGTGGACTTCTCCTTCAACCTGCTGAGAGACAGGAAATTCAGGTTCCATGACAGCAGTTtggtgaaagccataaagctggaAGAGCCGACTGTGCATGAGTTCTTTAGACTGCTGGCGCTCTGTCACACGGTCATGCCTGAGGAGAAGAATGAAGGGGAGTTGGTATACCAAGCACAGTCACCTGATGAGGGTGCCCTGGTCACAGCTGCACGCAATTTTGGGTTTGTCTTCAGAGCCAGGACACCAGAGACGATAACGCTCTATGAAATGGGGGAGCCTGTCACCTACCAGCTCCTGGCCATCTTGGATTTCAACAACGTGCGCAAGAGAATGAGTGTCATTGTGAGGACTCCAGAGGGACGGCTCAAACTCTACTCGAAGGGCGCCGACACAATTATATTTGACAGGTTGGATCCCTCCAATGAGGAGTTGATGTACACTACCTCAGAACATCTCAATGAGTTTGCTGGAGAAGGACTGAGAACATTAGCTCTGGCCTACAAAGATCTGGACGAAGATTTCTTTGAGGAATGGATGAAGAAGCTCCATTATTCCAGCACTGTGCTTGATAACAGAGAGGATTGCCTCGCCATACTGTATGAGGAGATTGAACAGGGGCTGCTGCTGTTGGGTGCAACGGCCATAGAGGACAAACTGCAGGAAGGAGTGACAGAGACCATTGCCTGTTTAACTCTGGCCAACATTAAGATCTGGGTCCTCACAGGGGACAAGCTAGAGACAGCAATGAATATTGGTTACTCCTGTAACATGCTGCGAGATGACATGAATGAGGTCTTCATCATCTCAGGTCATACAGTACAGGAGGTCCAACAGCAGCTCAGAGGAGCAAGAGAAACTATTCTGGGACCAAGCAAGGACCTTGCCAATGGCTGCATGGATGCAGGGAAAAGTCTGAAGGGAAAGTCTGAAGGGAACAGGAAAGACTCTGTTTTTGAGGAAACCTTCACTGCCGAGTATGCACTAATCATTAATGGGCACAGTCTGGCCCATGCCCTGGAGGCGAACATGGAGCATGTGCTCCTGGAAACGGCCTGCCTGTGCAAGACGGTCATCTGTTGCCGTGTCACACCCCTGCAGAAGGCTCAGGTGGTAGAGCTTGTGAAGAAGAACAGGGGAGTGGTTACTCTGGCAGTTGGGGATGGCGCCAATGACGTCAGCATGATTAAAACAGCAGACATTGGTGTGGGCATCAGTGGGCACGAGGGCATGCAGGCGGTGCTGGCTTCAGACTACTCCTTCGCCCAGTTCCGGTACCTGCAGCCCCTCCTGCTGGTGCATGGCCGCTGGTCCTACTTCCGCATGTGCAACTTCCTGTGCTACTTTTTCTACAAGAACTTTGCCTTCACCCTGGTGCACTTCTGGTTTGGCTTCTTCTGTGGTTTCTCGGCACAGACTGTGTATGACCAATGGTTTATAACCTTCTTTAACATAGTCTACACCTCTCTGCCAGTTCTTGCTATGGGCATGTTTGACCAGGACGTCAATGAGCAAAATAGCCTTCAGCACCCAAAGTTGTATGAACTTGGGCAGCTCAACCTGCTGTTCAACAAGTGGCAGTTCTTCATGTGCACGCTGCAAGGGATGTATACCTCCTTTGTGCTCTTCTTCATCCCCTATGGAGCCTTCTCCTATGCCGTGAGGGATGACGGGTCCCATATCTCTGACCAACAGTCCTTCGCCGTCACCATAGCAACATCCTTAGTGATTGTTGTGAGCGTTCAGATTGGGCTGGACACACATTATTGGACGGCTGTGAATCATTTATACATATGGGGTAGCCTTGCAACCTACTTTGCCATATTATTTGCTATGCACAGTGATGGCATATTCGGTATATTCCCAAGGCATTTCCCTTTTATCGGCACTGCGCGGAACTGCCTGACACAGAAGAGTGTGTGGTTGGTCATTCTCCTCACCACGGTGATATGTGTGGTGCCCGTGGTGGCAGTCCGATTCCTAAGGATAGATCTCTATCCAACCCTCACAGACAAGGTACGTCACTTACAGCGTGCCAGCAGGAGGCACGGAACTGAGGAACTGAATCTGAAGCGCGTGCGCAGGACCAGCTCGCGCCGCTCTGCGTACGCCTTTGCTCACCAGGAGGGCTACGGAGAACTCATCACCTCGGGGAAGAACATGAAGGTCGTTGGCCCCAGCTCTGCTCCTCCTGCTGGGAAGATGCAGAACAGCACCAGCTGGATTGAGAACCTGCTGAAGAAGAGAAAGGAGGCGCGCGATCAAGtttttcatCTCTGGTTTCATAGCACATTGCTGGTCACCTGGATTAGAGAAACATGTCTCTCCTCCTTCGCTGCGTCTCCAGCTGCTCGGTGCCCTTGCTCCATCGAGGCTTCCAAAGGTGTGCTCTATAAAGACGTAGTTGTCGGCGTCCCCAAGGAGATCTACAAAAATGAGCGGAGAGTGGCAGTGTCGCCGGCCGGAGTGCAGGCATTGGTCAAACAGGGCTTCAGCGTGCAGGTGGAGAGTGGTGCTGGAGATGAGGCCAAGTTCTCAGATGACCAATACAAAGAGGCGGGGGCCCAGATAGCTGACGCAAAGAGTGCTTTTGGCTCGGACCTCATTCTGAAGGTTCGAGCACCAATATTTAACGAGGCTCTTGGACTGCATGAAGCAGAACTGCTGAAGCCAAAGTCCACTCTTGTAAGCTTCATCTACCCAGCACAGAACCCTGAGCTCATGGAAAAGCTCGCCAAGCAGCATTGCACTGTTTTAGCTATGGACCAGGTCCCCAGAGTCACCATTGCCCAGGGATACGATGCTCTGAGCTCCATGGCCAACATAGCCGGATACAAGGCTGTTGTGCTGGCAGCGAATAATTTTGGAAGATTTTTCACTGGCCAGATCACTGCTGCTGGGAAGGTTCCTCCAGCCAAGGTATTGGTGATTGGTGGTGGAGTGGCAGGTCTTGCTGCAGCAGGGACAGCAAAATCAATGGGAGCCATAGTCAGAGGGTTTGATACCAGGCCGGCTGCTCTGGAGCAGTTCAAGTCCTTCGGGGTGGAACCTTTGGAGGTAGACATGAAGGAGTCTGGAGATGGGGTGGGTGGCTATGCAAAGGAGATGTCCAAGGAGTTTATTGAGGCAGAGATGGCGCTGTTTGCCAGGCAATGCAAGGACGTGGACATTCTCATCAGTACTGCTCTCATTCCAGGCAAGAAGGCCCCCATCCTCATCAAGACATACATGGCGGAGTCCATGAAGGATGGCTCTGTGGTGGTGGACCTGGCTGCTGAAGCTGGGGGCAACATTGAGACGACTAAACCTGGAGAGCTGTATGTTCACAAGGGGGTGACGCATATTGGGTACACCGATCTCCCCAGCAGGATGCCAACCCAGGCCAGCACTCTGTATTCTAACAATGTCCTGAAGTTGCTGAAAGCAATCAGCCCTGACAAGGAATACTTTTTCTTTGAGCCAAAAGATGAGTTTGATTACGGGACAATGGAGCACGTCATTCGGGGAACTATGGTCATGCAGgaaggAAAGAACCTTTTCCCATCTCCTCTCCCCAAGACCACCCCACCTGCCGCTCCTGCCAAACAGAAAACGGTGGCTCAAATTGAAGCTGAGAAACTGGCAGAAATCTCCCCTTTCAGACGAACCCTGAATTCGGCTGGCATTTACACAGCAGgCATCTCTGGGGTTCTTGGCCTTGGCATCGCCTCCCCTAATGCTGCCTTCACCCAGATGGTCACCACATTTGGGCTGGCGGGGATTGTGGGATACCACACCGTGTGGGGCGTCACACCAGCCCTTCACTCCCCACTCATGTCTGTCACCAATGCCATTTCAGgtctgactgcagtgggaggtTTAGTGTTGATGGGTGGTGCTCTTACCCCTGCCAGCCTCCCTCAGACCCTGGCCCTGCTGGCTGCCTTTGTGTCCTCCATTAACATTGCAGGTGGCTTTCTTATCACACAAAGGATGCTTGACATGTTTAAGCGTCCCACAGACCCTCCAGAGTTCAACTACCTGTATGCCTTACCTGGGGCTGTCTTTGTGGGGGGGTATGGGGCGTCTCTTGCCGGTGGCTATAGCATcgaacagATGATGTACTTGGGCTCTGGGATGTGCTGTGTGGGCGCACTGGCAGGGCTGTCTGCTCAGCGCACCTCCAGGCTTGGCAATACCCTTGGCATGATTGGTGTAGCAGGTGGCATTGCTGCAACTGTGGGCAGCCTCAAACCCTCTCCTGAGCTGCTGTCTCAGATGTCACTGGCCATGGCCACTGGTGGCACCTTAGGTCTGACCATTGCCAAACGGATTGAGATCGCAGACCTGCCACAGTTGGTGGCTGCTTTCCACAGCCTGGTGGGATTGGCGGCTGTGCTGACCTGCGTTGCTGAGTTCATGATCGAGTACCCTCACCTGGATATGCACCCTGCCGCCAATATGGTGAAGACTGTGGCCTACCTGGGCACCTACATTGGGGGCGTCACCTTCAGTGGCTCCCTAGTGGCCTACGGCAAGCTGCAAGGCGTCCTAAACTCTGCTCCACTGCTCCTGCCTGGGCGACATGCAATGAATGCTGGGCTTCTGGCTGCGTCCGTGGGTGGCTTGGTGCCCTTCATGCTGAGTGAGAGCTATGCCACCGGTATGGGCTGTCTGCTGGGTGTCTCTGGGCTCTCCACAATCATGGGTGTGACTCTGACTGCAGCCATTGGGGGCGCTGACATGCCTGTGGTCATCACCGTACTCAACAGTTACTCGGGCTGGGCACTGTGTGCTGAGGGCTTCCTGCTGGACAACAACCTTATGACCATTGTCGGTGCTCTGATCGGCTCCTCTGGTGCAATTCTGTCCTACATCATGTGCGTGGCTATGAATCGGTCCCTGCCCAATGTGATTATGGGTGGATTTGGAACAACGTCCACAGGAGGAGGAAAGCCCATGGAGATTGTGGGGACTCACACTGAGGTCAATGTGGACCAGTCCATTGAGATGATTAAAGAGGCCAACAGCATCATCATCACGCCAGGCTGGGGTCTGTGTGCTGCCAAAGCTCAGTATCCCATTGCTGACATGGTGAAGATGCTACAAGAACAGGGAAAGAGTGTCAGGTTCGGCATTCACCCGGTGGCTGGGCGTATGCCAGGTCAGCTGAACGTGCTCCTGGCTGAGGCTGGGGTGCCCTACGACATTGTACTAGAAATGGATGAGATCAACGAGGATTTCCCAGAAACTGACTTGGCGTTAGTTATCGGTGCAAATGACACCGTTAACTCTGCAGCACAAGAGGACCCCAATTCCATTATTGCTGGCATGCCAGTTCTGGAAGTCTGGAAATCCAAACAGGTTATTGTCATGAAGCGTACACTAGGCGTTGGTTATGCTGCTGTGGACAACCCAATTTTTTACAAGCCAAACACAGCCATGCTACTAGGGGATGCCAAGAAAACATGTGATGCCTTACAGGGTAAAATCAGAGAGGCCTTTTACTAG

Transcript

SKAU_T00350410

Protein

SKAU_T00350410

MAVADNAVEKDATRFNSLSEEERHVKANDRDFNDRFLYAANHIKTSKYNIFTFLPINLFEQFQRVANAYFLFLLILQLIPQISSLSWFTTIVPLALVLTVTVVKDATDDYFRYKSDQQVNTRQSQVLISGKLENEKWMNVRVGDIIKLENNQFVTADILLLSSSEPYGLCYIETAELDGETNLKVRQALTVTSELGADITKLAEFDGEVVCEPPNNKLDWFTGTLFWKDNKYPLDNEKMLLRGCMLRNTEWCFGMVIFAGLQTKLMQNCGRTKFKRTSIDRLMNTLVLWIFGFLTCMGIILAVGNTIWQERVGRTFRVYLQWDEVFNDSVFSGFLTFWSYIIILNTVVPISLYISVEGIRLGHSYFINWDRRMYYGRRDMPAEARTTTLNEELGQVEYIFSDKTGTLTQNIMVFNKCSINGKTYGEVFDDFGHKVEITEKTPCVDFSFNLLRDRKFRFHDSSLVKAIKLEEPTVHEFFRLLALCHTVMPEEKNEGELVYQAQSPDEGALVTAARNFGFVFRARTPETITLYEMGEPVTYQLLAILDFNNVRKRMSVIVRTPEGRLKLYSKGADTIIFDRLDPSNEELMYTTSEHLNEFAGEGLRTLALAYKDLDEDFFEEWMKKLHYSSTVLDNREDCLAILYEEIEQGLLLLGATAIEDKLQEGVTETIACLTLANIKIWVLTGDKLETAMNIGYSCNMLRDDMNEVFIISGHTVQEVQQQLRGARETILGPSKDLANGCMDAGKSLKGKSEGNRKDSVFEETFTAEYALIINGHSLAHALEANMEHVLLETACLCKTVICCRVTPLQKAQVVELVKKNRGVVTLAVGDGANDVSMIKTADIGVGISGHEGMQAVLASDYSFAQFRYLQPLLLVHGRWSYFRMCNFLCYFFYKNFAFTLVHFWFGFFCGFSAQTVYDQWFITFFNIVYTSLPVLAMGMFDQDVNEQNSLQHPKLYELGQLNLLFNKWQFFMCTLQGMYTSFVLFFIPYGAFSYAVRDDGSHISDQQSFAVTIATSLVIVVSVQIGLDTHYWTAVNHLYIWGSLATYFAILFAMHSDGIFGIFPRHFPFIGTARNCLTQKSVWLVILLTTVICVVPVVAVRFLRIDLYPTLTDKVRHLQRASRRHGTEELNLKRVRRTSSRRSAYAFAHQEGYGELITSGKNMKVVGPSSAPPAGKMQNSTSWIENLLKKRKEARDQVFHLWFHSTLLVTWIRETCLSSFAASPAARCPCSIEASKGVLYKDVVVGVPKEIYKNERRVAVSPAGVQALVKQGFSVQVESGAGDEAKFSDDQYKEAGAQIADAKSAFGSDLILKVRAPIFNEALGLHEAELLKPKSTLVSFIYPAQNPELMEKLAKQHCTVLAMDQVPRVTIAQGYDALSSMANIAGYKAVVLAANNFGRFFTGQITAAGKVPPAKVLVIGGGVAGLAAAGTAKSMGAIVRGFDTRPAALEQFKSFGVEPLEVDMKESGDGVGGYAKEMSKEFIEAEMALFARQCKDVDILISTALIPGKKAPILIKTYMAESMKDGSVVVDLAAEAGGNIETTKPGELYVHKGVTHIGYTDLPSRMPTQASTLYSNNVLKLLKAISPDKEYFFFEPKDEFDYGTMEHVIRGTMVMQEGKNLFPSPLPKTTPPAAPAKQKTVAQIEAEKLAEISPFRRTLNSAGIYTAGISGVLGLGIASPNAAFTQMVTTFGLAGIVGYHTVWGVTPALHSPLMSVTNAISGLTAVGGLVLMGGALTPASLPQTLALLAAFVSSINIAGGFLITQRMLDMFKRPTDPPEFNYLYALPGAVFVGGYGASLAGGYSIEQMMYLGSGMCCVGALAGLSAQRTSRLGNTLGMIGVAGGIAATVGSLKPSPELLSQMSLAMATGGTLGLTIAKRIEIADLPQLVAAFHSLVGLAAVLTCVAEFMIEYPHLDMHPAANMVKTVAYLGTYIGGVTFSGSLVAYGKLQGVLNSAPLLLPGRHAMNAGLLAASVGGLVPFMLSESYATGMGCLLGVSGLSTIMGVTLTAAIGGADMPVVITVLNSYSGWALCAEGFLLDNNLMTIVGALIGSSGAILSYIMCVAMNRSLPNVIMGGFGTTSTGGGKPMEIVGTHTEVNVDQSIEMIKEANSIIITPGWGLCAAKAQYPIADMVKMLQEQGKSVRFGIHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEINEDFPETDLALVIGANDTVNSAAQEDPNSIIAGMPVLEVWKSKQVIVMKRTLGVGYAAVDNPIFYKPNTAMLLGDAKKTCDALQGKIREAFY

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01262	AlaDh_PNT_C	Alanine dehydrogenase/PNT, C-terminal domain	Domain	Interproscan
PF02233	PNTB	NAD(P) transhydrogenase beta subunit	Family	Interproscan
PF05222	AlaDh_PNT_N	Alanine dehydrogenase/PNT, N-terminal domain	Domain	Interproscan
PF12769	PNTB_4TM	4TM region of pyridine nucleotide transhydrogenase, mitoch	Family	Interproscan
PF13246	Cation_ATPase	Cation transport ATPase (P-type)	Family	Interproscan
PF16209	PhoLip_ATPase_N	Phospholipid-translocating ATPase N-terminal	Family	Interproscan
PF16212	PhoLip_ATPase_C	Phospholipid-translocating P-type ATPase C-terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001757	Family	P-type ATPase	Interproscan
IPR006539	Family	P-type ATPase, subfamily IV	Interproscan
IPR007698	Domain	Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain	Interproscan
IPR007886	Domain	Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal	Interproscan
IPR008142	Conserved_site	Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1	Interproscan
IPR008143	Conserved_site	Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2	Interproscan
IPR008250	Homologous_superfamily	P-type ATPase, A domain superfamily	Interproscan
IPR018303	PTM	P-type ATPase, phosphorylation site	Interproscan
IPR023214	Homologous_superfamily	HAD superfamily	Interproscan
IPR023298	Homologous_superfamily	P-type ATPase, transmembrane domain superfamily	Interproscan
IPR023299	Homologous_superfamily	P-type ATPase, cytoplasmic domain N	Interproscan
IPR024605	Domain	NAD(P) transhydrogenase, alpha subunit, C-terminal	Interproscan
IPR026255	Family	NAD(P) transhydrogenase, alpha subunit	Interproscan
IPR029035	Homologous_superfamily	DHS-like NAD/FAD-binding domain superfamily	Interproscan
IPR032630	Domain	P-type ATPase, C-terminal	Interproscan
IPR032631	Domain	P-type ATPase, N-terminal	Interproscan
IPR034300	Domain	NADP transhydrogenase beta-like domain	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR036412	Homologous_superfamily	HAD-like superfamily	Interproscan
IPR044492	Domain	P-type ATPase, haloacid dehalogenase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10160	NAD(P) TRANSHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000166	Molecular Function	nucleotide binding	Interproscan
GO:0000287	Molecular Function	magnesium ion binding	Interproscan
GO:0005215	Molecular Function	transporter activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005743	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0006740	Biological Process	NADPH regeneration	Interproscan
GO:0008746	Molecular Function	obsolete NAD(P)+ transhydrogenase activity	Interproscan
GO:0015914	Biological Process	phospholipid transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0050661	Molecular Function	NADP binding	Interproscan
GO:0140326	Molecular Function	ATPase-coupled intramembrane lipid transporter activity	Interproscan
GO:1902600	Biological Process	proton transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-