Gene detail

Detailed information of SKAU_T00344870 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00344870	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	CM056391.1	6031751	6044344	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00344870

aaagccttcgccatagtagcaTTCGTAAATTCGCCGACTGAGTGCGTCAACATGCTGACGAAGCTTGGTTTTTTTTTCAGCTAGGAGGAGAGACTTGTCTCTGCCCAGGTTGttctcattcccaaggcgtcatcaagtgacgcttgggcagcagccGACGGCGTCATCATTTGGACGCAAAAGGAGGCCATTTGCGTCAGCTTGTTGACGCACTCGGTCGCTCAGTACTGTCAGATGTTTACCCTGGCTTTCGCCGAGTACTCACTATGGGGCGTCGTACGGATTTTAACGAAGCAATCCCGAAAATAACGACAGGGCGCGAGACCGCGAGTCAGCAGGAGTGTTAATGAAAATGACTAAACCAAAACTTAAACCATGCCCTCACTGTGAGGGCTTAAATGCAGCAAACTGCAAAACATGCAAGTTATGCTTTGCCAGCCTGGCATTCAAAGCCAGGCTGAAGATGAAAGAGGAGAAGTTGGCGTCGGGCGACTGGGGGGACAGCACTAAGAAGAACCGCAATGCAGGCAGGGTGTTGGACTCAGCCCGTATTTCTGTGAAGAAACTGCATGCATTGGGCTATAAGCCAATTCTTCTTCTGGGCAAAGAAAAGAGAGGAAAGACTGAACAAGGGGAAAGAGGAAGTCAAGGTCCGGTGGCAGCCTTGTTCAGCCTGgctactcaacagtgtgctgattcggacacggccccagttGAGGTGTTTATGCAGAAGGCCATCCACACCATAGAGTACTGCCTGGGCTGCGTCTCCAACAGCGCCTCCTACCTGCGACTGTGGGCTCTCAGCCTGGGACATGCACGTCAAGTACAAAGACAAGTCATCTGTGCAGCAAACAGCGTTGGATCCAAATATCCAGCTCGTTCTATGAGCCAAGCCGCCCCACACCCAGAACCCGAGTGTGACGATAACGAACATGTCGGCACGAGGTTTATCAACAGAAACCCTCGAAACCTGGAGCAGATGGCCTTAGCGGTGAAGGACAGAGGTTGGGCCGACACGTGGCCATCCAGGCATTGCTACCACAGACTGGTGTTCTCCCGGTCTCAGCACCACGTCACGGCGCAGGTGTTTTTGGCGGGGTCGGACGAGCCGGTGGTGTCGTGTTCCACGCAGGAGTGGGCGGTAAAGAGAGAGCTGGCCTGCTGCAAGCGCTCGGTGTCTGCCAGCCAGGCCGTGGGGGAGGTGCTGGCACAGCGCTGTCTGGAGGCGGGGCTACACCGCGTCACCTTCAGGGCGGTACCCTGGGAGTTCCGCtcgttggctgtGCAGAAGTTCTGGACTGCCATGAAAGAGGGCGGGATCACCCTAAGCGAACCGCGACGGAAATACATCTGATTGGCCGGCTGGCATGCATGCTGCTGTACCGATTGGCTGATGTAACTCATTGTACAGAAAATGGTGGAAGTCATGGGCTTGTAATAAAGAAAATTTTTCGTATCCGAGTTCCTCGTTTATGCTATTAATGCTCCTCAGTTGGGATGGGTTAGGGTGTTGGGTCACTAGTTTGCACTGGAAGCTGTTCTTCAGTGTGGTGTTGAATCTTAAATTCAGCAGGCGCTGTAGAGCCATGTGAATACTTGGCTCACAAGCTCCCCGCTATACACCTCAGCAATggagctagcttgctagctagctactagtacATGATCGTTAGCCAGTCATTCATGAGTATTATGGTTCATGCAGCGAATGACAGTACCAGTTTTAGCTAATGTTAACGCACAAACATACGCAGCTGATCTCCTGTTAGCAGGGAAATAACCATTACCACAGTTCTGTACGCAGCTGATCTCACGTTAGCAGGGAAATAACCACCCCTGACCACAGCCTTGCACAAGAAAAATCTCCATTTTACACAATGACGAAGACATCTTTTGTTTAAATtttaagagattttttttttattgtattttttcttttcttggaaaaacacaaatgacaaaaaacagaaaacaaaaaaaaaagttgcagaaaATAATTACTGTAATGCTACAGATCTGTCACTGTATAGAcggatgaaaataaacaaatttac

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00861	Ribosomal_L18p	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast	Family	Interproscan
PF01496	V_ATPase_I	V-type ATPase 116kDa subunit family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002490	Family	V-type ATPase, V0 complex, 116kDa subunit family	Interproscan
IPR005484	Family	Large ribosomal subunit protein uL18	Interproscan
IPR036967	Homologous_superfamily	Small ribosomal subunit protein uS11 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005739	Cellular Component	mitochondrion	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0008097	Molecular Function	5S rRNA binding	Interproscan
GO:0033179	Cellular Component	proton-transporting V-type ATPase, V0 domain	Interproscan
GO:0046961	Molecular Function	proton-transporting ATPase activity, rotational mechanism	Interproscan
GO:1902600	Biological Process	proton transmembrane transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-