Gene detail

Detailed information of SKAU_T00342820 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00342820	IG-LIKE DOMAIN-CONTAINING PROTEIN	CM056391.1	561264	573577	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00342820

ATGAACACAAAGAAAGAGACTCGGGctcTGAAAGACGACCGTTTCCAGATGGTCCTCTTCACTCCCAAGCTCGTGCGCATCGCCCTCAGCAACGTCAGCGTGTGGGACGAGGGCGGCTACTTCTGCCAGCTCTACACGGACGACACGCACCACCAGGTGGCCACACTGTCCGTCAGCGTGCCCCCCGACGTGCCCACCGTGGAGGTGAAGACAGAGGCGGTGGAGGGGGGTGAGGTGGAGCTGGCCTGCATATCGCCGCGCAGCAAGCCACCCGCCACGCTCCGATGGATGCGCGACCGCCGCGAGATCCAAGGGGTGGTGTCACAGCAGGACTACGGGAAGACGTACAGCGTTTCCAACACCATCCGTATCCCGGTAGAGAGGCGGGACAACAACGCGCCAATCAGCTGCGAAGCCTCCCACCCGGCCCTGGGGACACAGAAGAAAGTTCGGCACTACCGGCTGGATGTGCACTttGCCCCCACAGTGAGGATCCTCCCACCACCTGGAATACTGAGAGAGGGAGACTCCCTTAGTCTCGTCTGCTCCGTCACTGGAAAcccactcccgCGAAACGTGCAGTGGTTCAGGGTGAACGACACGCTCCCGGAACGAGCTGAGACCTCAGGCCCCACCCTGACGGTGTCGCGGCTCAGCCAGGCTCACAACGGGACCTACCTCTGCCAGGCGCACAACGACTACGGCCGAGCCGCCGACCACTACACCCTGCTGGTATACGAGAATGTGTCTGTCGTAGAGAACGTGTCTGTCATTCCCACGGCCCCTCCCACCTCCCATACCGCCACCTCAGTCCCAACCTCCCTAACCCCAATCGATGCCCTGGACCCCAGAGATCCTGGGGCGGTGGTGGATGCCCACAGTGCAGTACCCTATGCTGTGATAGGGGGCATCCTCGCGCTGCTGGTCTTCACCATCATCTGCGTGCTCATTGTCACCATCTGGTGCTCCGTCAGGCAGAAAGGCTCATACCTGACCCACGAGGCCAGTGGCCTGGACGAGCACGGGGAGGTCCAAGAAGCTTTTCTCAACGGCAGCGACTCCAGGGAGGGCAAGAAGGAGTATTTACTGTAGCGCCCTCTGCTGGCAGCCTCCTCAACTGCGACTGTACAACGGCATTCTCCACACTGCACACAACACTGCAAGACTGTCAAAAGGGAAAGATGATCCACCTATCACAATTGTGCCATATACGGGAAGGGATTCAGGCGTAGTGACAGCATGAGGGAGAGAgggcctgttttttttgttttgtttttttaatgaaggagagaaagaagaaaaagaaggaaaAGAATTCCCCCCCCCCGTGCACTGTGCTTAGCCGACTGAGACCGACTGAGAGAAAAAATGTTTGAGTCCTGCACCCAGAGAGAACTGCTTAGTCAGAACACATCACACAGTCCACAGCCTGCCAAAATAGAGGAAGATAGCAGGATGGCGGGCTATAGGGTGGAATTGGAGTGGGGGGCAGGCATTGTGAGCTATTGAATGACATCAGAAAATTGAAATACTTAAATGGTCAAAAGCCTCTCAGCCAATAAGAAGACAAACCCCACATATATCATCTTGACAATAAAACAGAGTGCCACACAGACGACTCATTAAGCGTACATATACATGTAAATATAAGGCCTCCCTATATATTTGTATTAAATAATCCATATCCTGGGCAAGCCTTCTCAGTGTGAGGGCCTCACTCTATTCTCTCTCAGTCCGTTCCTCTGGAATTATTTGTACTACTGAAGTATTCTCTCTTaaaattttctttctttctctcccttgtAATCTCTCCCGTTGTTTGCGAATAGTTGAGGGATTATATTGTCTACTCgtgagagaaagggggaaaagggcaTGACACACTGATGGTTGTTAAAGAGGACAGATTattttaaattctattttaagAGAATTAAAGGCTTGAATGAGCATAACACTGAGAGAATGGAAAAACTGGAAGAACAAGATATTGGACAAAAGGTTGTTTTCCGAGTGCTACAATACAGACAGAATACAGTTACACAATGATACATATCTCTGAACTCAAATGTTATTTGTATAAAAAAGATGACAAGAACATGAaatgaatcttttttttaaaaaaacaacaaaaaaaatatttactttGGAACGTATTATGAAGCGATGTTACTATACTAACACAGAATATCAGAATATTAGCCTAGCGGTGCAAAaccgaaaaaaatactgttaagtgatctttgagggaaaaaaaaaacaagaaaatgggggggggggggggggggggaaatcatttcattttgtcattatgaAATACCTGATGTCTTATTGGTTtttattaattataattattattttgactattacgattgttgttactgttgttattattattattgtaattgttATTAATTGTATACACTTCCCATGTTTGTTATTTCTGTAGAAACTGCtgtccctcctttctctcttttgctttcctctcctctctttcttccTGTTTCTATCCTTGTCTGTCCTCTGTGATGGTCTGTGTCTGTCTCTTCCGCTCTGTCTTTTGCTCTCCTCTTTAATTTGTAGTCCCCGCGTCGCTGTTGATATAGCTAACTGTATTTCTTTATAGGGGAAAGATACAAAGCACGAGAAaataaaaaac

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08205	C2-set_2	CD80-like C2-set immunoglobulin domain	Domain	Interproscan
PF13927	Ig_3	Immunoglobulin domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003585	Domain	Neurexin/syndecan/glycophorin C	Interproscan
IPR003598	Domain	Immunoglobulin subtype 2	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013162	Domain	CD80-like, immunoglobulin C2-set	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45889	IG-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0035020	Biological Process	regulation of Rac protein signal transduction	Interproscan
GO:0043184	Molecular Function	vascular endothelial growth factor receptor 2 binding	Interproscan
GO:0044291	Cellular Component	cell-cell contact zone	Interproscan
GO:0050732	Biological Process	negative regulation of peptidyl-tyrosine phosphorylation	Interproscan
GO:0061041	Biological Process	regulation of wound healing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-