Gene detail

Detailed information of SKAU_T00339630 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00339630	40S RIBOSOMAL PROTEIN S29	CM056390.1	24555174	24559752	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00339630

AAGAGACGTTTCATTCCCGCATGCGCAATCGGTCTCTTTCTTTTTCGACGTCGGGTAGAGTGAGGCAAGATGGGTCACCAGCAAATTTACTGGAGTCACCCACGGAAATTCGGCCAGGGGTCAAGATCCTGccgCGTATGTTCTAACAGACATGGTTTGATCCGCAAGTACGGACTCAATATGTGTCGTCAGTGCTTCCGACAGTACGCAAACGACATCGGCTTTGTCAAGCTTGATTGATCGTGCTGAGGAGTCGGATGGAAGAGATCCCAACAGCAACCTTCAAAGATTGGACTTGGCTGCACTGTAAAATTGGAAAAAGAATAAATGTTTTTGCAGTCTGAACCTATCTTATGTGGTCCTATTAATTCAGATTGAGCACTAAGTCACTGTGCACACGGACTTGGACATGATGTGCCATTTGTCAGACCAACCCAATCAACTCCCTGTACTGTATAATGCTTCTCTGCAAAGTTTGCTTCCAATTGAGTTGACTTTCCCTGTGTCATGGATCATGACATGGCATTTTGCATAGCAGTTACATTGCAGtcttaagtatttggacagtgatgcaattttagttattttggctctgtattcctgcacattggatttaaaatgaactgtccaaatgcttacagACTGCACTATACTTCTGGAAACCCGTAATGAAGTAACGTTTTGGCAATGGAACAGATATATTTGCACATCTGACCCAGTCTCTGCACATGAGCATACAGTAATATAAACATTACTCACTTGAAGTGGCACTTCAAAAGTTGCTACTGTAGTTGTGTTCTGGCACTGATTGCATAAAGGCTCATTTACTAAAAGTATGGACATAAGAGGCCTGTATACCATGAATCTTTAAAATGTAGAGGCTTGTAAATTTAATGGATGCTTGAGGCCCTTCAAGGTATTGATTGGTTGCTTGACTTTATAGCTTATGAGACATTTATGTTCATTTGCCTTTGGGGGATTTTGAATTTATAGAACTGTGCAGATCTTGTCCCCTACTGTAACAGCTGCAATCTACCACTTCATTTGAAATCCTCTCACTAGTGATGATTCCAGTGATTACTTCATGTGAATGATGCAATGTCACGAGTCTCACACAAAATAGGTGTCATAAATTTTGAAAGGTAGTCTTGGTGTACCAGATATTTTGGAGGAGTTGACCAGATGTAGCATTAGGTTATGGCCTTGTCCACTTCACTCTGGCTTTTCCCCCACAGTATTTGTAAACTAAGCCTGGTCAATTGGTATTTCAGCAGATATGGGGGGTGAATTGTTCATTGGAAAGTATGGATATTTATGCAATATTATTTAGCATTTTAATTGCCACACATTTTTGCCCGAACGCAGTGCGTGTGGGCCTAAACGAGTGAATAtgagtaactgactgactggctggttgcctgatcccccgatgttgaaaccACATGCGTACATTTCAAGTAATTACAGTAAAATGTTTGCTGTCCAACTCCCTGTCCCATTTTACTAgaacaagttgtagcacccaaaaatcatgaacaactgtggataagTTTAATGAtgcaggtcaattggctgaaatgtataatttgtCTCGTAGTTGTTattgcccagtcaatattgtttcaccagtgggAGGGGGGAATTAATTGGTATTTAAATTTTACTCaattacttcagggaagttaggccagatagctacactctccacaGGAAGACATCGctcatgttttaaactcaatcaatgtcagagaaGCAACATCTAACAAAAAGTAAGCTGAGTTCAAAGCGggttattttttgactgtggtcccggcaaatacgcgGCCTGTCGAGTgacgcataaataaataaacagcaattcaaagcatttggcctcctgttcgtcgaatggtacgtcaagttttctgcacaaaggtacaacgacatgcctaaattctgcacaaattccatgataacgtgtgggctaactgttaatgctgatatgtctgaattaacattctgtagcctttaatgaactcatCAGTacatctcgcttaatatttggagtgccatcggcagaaagctgagagTATCCTATTTGTAACTATAATACTCAAAATGACATAGCGTCCACCCGCCccatcctctttttaaaaaattcgtCCACCCGCCccatcctctttttaaaaaattcaaatggtcaccctatacagtaggc

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00253	Ribosomal_S14	Ribosomal protein S14p/S29e	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001209	Family	Small ribosomal subunit protein uS14	Interproscan
IPR018271	Conserved_site	Small ribosomal subunit protein uS14, conserved site	Interproscan
IPR039744	Family	Small ribosomal subunit protein uS14, eukaryotes/archaea	Interproscan
IPR043140	Homologous_superfamily	Small ribosomal subunit protein uS14 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12010	40S RIBOSOMAL PROTEIN S29	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0022627	Cellular Component	cytosolic small ribosomal subunit	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-