Gene detail

Detailed information of SKAU_T00337880 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00337880	AGAP002036-PA	CM056390.1	20832030	20843653	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00337880

ATGAGTGGCCAGGGTCCGTCTTCGGAAAAAGGAGTAAACATCAGTTTAGTTTGTCAAGAGAGCTATGCCTGTGGAGGCTCCGAGGAGGCTGTATTTGAATGTGATGAGTGCGGCAGCTTGCAGTGCGTTCGCTGTGAGTTGGAACTCCATCGCCAGGAGCGCTTGGCAAACCACGAGCGCATTCGAATTGGACCGGGGCATGTGCCCTTTTGTGACTCCTGTAAGGGAGGTAACAGCAGCCCTATGAGCGGTGGTCGCCAAAGGGCGGTGGTCCGCTGCCAGGGCTGCAAAATCAACCTCTGCTTGGACTGTCAGAAACGCACCCACAGTGGAGTGAACAAAAGAAAGCATCCTCTCACCAACTACCCTCCGCCCAAACCTGTAGAGGCAAGTTCTGGTGCTGGGGTGGATGAAGTAGAGGCATGGAAGGCCAGAAttctggagaaggtctgcagcttTCTCCTTGTGGACGAGAATGAAGAGATGCAGGTGAATGATGAAGACATGTTTGTCAAGAAATTGGTCTGCAATCCTGACCAGCTCCTCAAGGTGGTGTCCATTTTTGGCAACACGGGGGAGGGTAAGTCCCACACACTCAACCACACCTTCTTCCTGGGCAGGGAGGTGTTCAAGACTTCCCCTACTCAGGAGTCTTGCACAGTGGGGGTGTGGGCGGCGCTGGACCCCGTCCACATGGTGGTGGTTATCGACACCGAGGGGCTGCTGGGGGCAAGCTCCAACCAGGGCCAACGCACCCGCCTGCTGCTGAAGGTGTTGGCCATCTCTGACCTGGTAATCTACCGAACCCATGCTGACCGTCTCCACGATGACCTCTTCAAGTTCCTCGGGGATGCCTCGGATGCCTATCTGAAGCACTTCACCAAGGAGCTGAAGGCCACCACTGCCCGCTGTGGACTGGATGTGCCTCTGTCCACTCTGGGGCCGGCCGTCATCATCTTCCATGAGACCGTCCATACCAAGCTTCTTGGCTCAGacaagCCCTCTGAGTCAGTGGAGCGGCTGTTACAGGAGCGCTTCCGGAAGCTGGGCCGGTTCCCAGAGGCCTTCAGTTCCATCCAGTACCGCGGCACGCGCACCTACAACCCGCCAACGGACTTCAGTGGCCTGCTGCACACCCTGGAGCAACAGCTGGACAACAACACCACTCGGTCCCCACGCTCCCCTCGAGTCATCTACAAAGCCCTGCAGGCCCTGAGCGAACGCTTCAGTGGGACATCCAGGGAAGAGCACCTGGCACACAGCTCCTTCTTCCCAGACGAGTACTTCACCTGCTCCAGCTCTGCCTTAGCTGTGGGCCTTGATCATCACATCTCGCGTTCTTTCCGAAAAAACCCTAGCTCCGGCTGCCGGAACAGCATGAACCACCTGCGAGAGGGCGTGTGCCACGAAGCCAAGCACCGATGCCGCTATTCCATTCACTACGACAACCGCGTCTACACCTGCAAGGCATGCtatgagggagggaaggaggtgaTCGTGGTGCCCAAGACGTCCGCTTCCTCTGACTCTCCGTGGCTAGGCCTGGCCAGATATGCCTGGTCGGGGTATGTGATTGAATGTCCTAACTGCGGTGTGATTTACCGGAGCCGGCAGTACTGGTACGGGAACCAGGACCCTGTGGACACAGTGGTCCGTACAGAGATCCAGCACATATGGCCAGGGGCTCATGAGTATGACCTTAAGGACTGCAATCTCTTCTGCAGTCCGGACGGCTTCCTGAAGGGACAACAGCAACGCGGCACAGCGCTGCTGGACGGGGTCAGCTTTATGGCGCAGTCCGTCTCCGAGCTCAGCGTCAAGCCCGCTAAAGCCGTCACCTCCTGGCTCACAGACCAGATCGCTCCGGCCTACTGGAAACCCAACTCCTCATCCTGCGAGATGTTCCAGGACAAACGACACCCAAGCACCACTGCCGTGCCTGCGGGGAGGGCTTCTGCGACCAACTGCTCCTCCAAGGCCCGCCCCGTCCCAGAGAGAGGCTGGGGCCTGACCCCTGTGCGGGTCTGCGACGCCTGCTTTGAGCAAAGGGGCCTCAGGCCAGGTATGACCCCGGTCAGTCAGCAGCCACTGGAGGATGAGGAAGGCGGGACGCTCATAGCCAGAAAGGTTGGAGAAGCTGTGCAAAACACCTTCGGAGCTGTGGCCACAGCCATAGACATCCCACTGGGCCTGGTGAAGGACGCTGCCCGCCCCGCCTACTGGGTGCCCGACCAGGACATCCTGTCCTGCCACCACTGCCAGCGCGAGTTCACTGCCAAGCTCTCCAAACACCACTGCCGTGCCTGTGGCCAGGGCGTGTGCGACGAATGCTCCGCCGAGCGCCGCTCCGTCCCCTCCAGAGGCTGGGACCACCCTGTGCGCGTCTGTACTAACTGCAACCAGAAACCAGGGGACCTCTAG

Transcript

SKAU_T00337880

AGTACTTCAATTCCCAGAATGCAACAGCATATGATCTCTCCTCCATGACCTATGGCCTGTGACTGAAATAATCTGATCAGCTGATCTGACCTGGCAACAACATTCAGAGAGCTCTAACAGGGAGGggaacctttaacaaaacaatgcCTTTAATATTTAAGAAAGCACTTTAATATAATGCTCTAATTTTTCAACTCTTTAAACGGGTGATGCAGTGTATTAGTAGGAAAAAAAGCCGTGCTTATATTTTGAGAACGAACTGCTAGCTAGCCAACGGTAGCTAGCTAGGATTACTGAGTCACTATCTTGTACCAGGCGactgtgtttttgttgttgggTAAACATCTGATTTTCTCGTGTCTTTTACAGATAATACTTGAAGAAACAACGATTTGCTCTCTCTTCAACGTTAACCGGGTTATACCAAATAATAGACACGATTCAGTTGTTTAGCTGCATGTAAATAACACTGgtttcaaatattaaatattttacatGTCATTTGTATGCTTTTTCGTCGCATCGAGTAACCTAAAGGGAAATTCTATGTCACAACGATAATATTTTATGTGTACTTCTGTGAGAACATAACACATTCGGTTGCATTAAAAACGATGGGTAGTTAGGCAACCAAGTGGTTTAGCAAGGCAATGTTACTTTGTTCTTTATTTTGACATTTCAGAAACTATTTTACGTTAGCTGTAATAATTTTGTAGCCTATGTTTATGAACAAAACTCGGCATTTATCTTTTCACCTCAATTGCATTTAGCGACTGAAAGAACAGCATTTTGCACTGtgccataatttaaaaaaatatatatgtatatttgttATTACAAAACGGTGGAGGTAAGTAGAGTAAATGTTACAGTAAATAGTTAAGAACCGCAAAGTTCTAAATGCACAACACCATACTACCTTACTGACAAGTCTAAACGGATAATGCATTCGActgtttaaaaattatatatttatatatatacacatatactatAGATAACACATCGCATATATATCCACTCtatagtagcctatatataatacTGAATATTAACGTAAATATATCGGACACATAATATCTTAATATTAAAGTAGTCTGTACAGATTCATAAAGTCTGAAAAAATGAGTGGCCAGGGTCCGTCTTCGGAAAAAGGAGTAAACATCAGTTTAGTTTGTCAAGAGAGCTATGCCTGTGGAGGCTCCGAGGAGGCTGTATTTGAATGTGATGAGTGCGGCAGCTTGCAGTGCGTTCGCTGTGAGTTGGAACTCCATCGCCAGGAGCGCTTGGCAAACCACGAGCGCATTCGAATTGGACCGGGGCATGTGCCCTTTTGTGACTCCTGTAAGGGAGGTAACAGCAGCCCTATGAGCGGTGGTCGCCAAAGGGCGGTGGTCCGCTGCCAGGGCTGCAAAATCAACCTCTGCTTGGACTGTCAGAAACGCACCCACAGTGGAGTGAACAAAAGAAAGCATCCTCTCACCAACTACCCTCCGCCCAAACCTGTAGAGGCAAGTTCTGGTGCTGGGGTGGATGAAGTAGAGGCATGGAAGGCCAGAAttctggagaaggtctgcagcttTCTCCTTGTGGACGAGAATGAAGAGATGCAGGTGAATGATGAAGACATGTTTGTCAAGAAATTGGTCTGCAATCCTGACCAGCTCCTCAAGGTGGTGTCCATTTTTGGCAACACGGGGGAGGGTAAGTCCCACACACTCAACCACACCTTCTTCCTGGGCAGGGAGGTGTTCAAGACTTCCCCTACTCAGGAGTCTTGCACAGTGGGGGTGTGGGCGGCGCTGGACCCCGTCCACATGGTGGTGGTTATCGACACCGAGGGGCTGCTGGGGGCAAGCTCCAACCAGGGCCAACGCACCCGCCTGCTGCTGAAGGTGTTGGCCATCTCTGACCTGGTAATCTACCGAACCCATGCTGACCGTCTCCACGATGACCTCTTCAAGTTCCTCGGGGATGCCTCGGATGCCTATCTGAAGCACTTCACCAAGGAGCTGAAGGCCACCACTGCCCGCTGTGGACTGGATGTGCCTCTGTCCACTCTGGGGCCGGCCGTCATCATCTTCCATGAGACCGTCCATACCAAGCTTCTTGGCTCAGacaagCCCTCTGAGTCAGTGGAGCGGCTGTTACAGGAGCGCTTCCGGAAGCTGGGCCGGTTCCCAGAGGCCTTCAGTTCCATCCAGTACCGCGGCACGCGCACCTACAACCCGCCAACGGACTTCAGTGGCCTGCTGCACACCCTGGAGCAACAGCTGGACAACAACACCACTCGGTCCCCACGCTCCCCTCGAGTCATCTACAAAGCCCTGCAGGCCCTGAGCGAACGCTTCAGTGGGACATCCAGGGAAGAGCACCTGGCACACAGCTCCTTCTTCCCAGACGAGTACTTCACCTGCTCCAGCTCTGCCTTAGCTGTGGGCCTTGATCATCACATCTCGCGTTCTTTCCGAAAAAACCCTAGCTCCGGCTGCCGGAACAGCATGAACCACCTGCGAGAGGGCGTGTGCCACGAAGCCAAGCACCGATGCCGCTATTCCATTCACTACGACAACCGCGTCTACACCTGCAAGGCATGCtatgagggagggaaggaggtgaTCGTGGTGCCCAAGACGTCCGCTTCCTCTGACTCTCCGTGGCTAGGCCTGGCCAGATATGCCTGGTCGGGGTATGTGATTGAATGTCCTAACTGCGGTGTGATTTACCGGAGCCGGCAGTACTGGTACGGGAACCAGGACCCTGTGGACACAGTGGTCCGTACAGAGATCCAGCACATATGGCCAGGGGCTCATGAGTATGACCTTAAGGACTGCAATCTCTTCTGCAGTCCGGACGGCTTCCTGAAGGGACAACAGCAACGCGGCACAGCGCTGCTGGACGGGGTCAGCTTTATGGCGCAGTCCGTCTCCGAGCTCAGCGTCAAGCCCGCTAAAGCCGTCACCTCCTGGCTCACAGACCAGATCGCTCCGGCCTACTGGAAACCCAACTCCTCATCCTGCGAGATGTTCCAGGACAAACGACACCCAAGCACCACTGCCGTGCCTGCGGGGAGGGCTTCTGCGACCAACTGCTCCTCCAAGGCCCGCCCCGTCCCAGAGAGAGGCTGGGGCCTGACCCCTGTGCGGGTCTGCGACGCCTGCTTTGAGCAAAGGGGCCTCAGGCCAGGTATGACCCCGGTCAGTCAGCAGCCACTGGAGGATGAGGAAGGCGGGACGCTCATAGCCAGAAAGGTTGGAGAAGCTGTGCAAAACACCTTCGGAGCTGTGGCCACAGCCATAGACATCCCACTGGGCCTGGTGAAGGACGCTGCCCGCCCCGCCTACTGGGTGCCCGACCAGGACATCCTGTCCTGCCACCACTGCCAGCGCGAGTTCACTGCCAAGCTCTCCAAACACCACTGCCGTGCCTGTGGCCAGGGCGTGTGCGACGAATGCTCCGCCGAGCGCCGCTCCGTCCCCTCCAGAGGCTGGGACCACCCTGTGCGCGTCTGTACTAACTGCAACCAGAAACCAGGGGACCTCTAGCAGGGCTGGCCCTTTAATTCTCCCCATGGAACACTGGAgtgatccacccccccccccccccgtagctAGAATGGTTAAGCCCAGTGTGTAGCGGAGACGTCCTCTGTACACATAGAATTTCACTGTTCACCATTTGTAGACTATGGCCTCTGTAGAGTgagaagaacccccccccccccccgccccatttgtctgtctgctccagcacAGAGAAAAGGCATGTAGCACAACAGAGTGAGTGGTTAAGagatctccacccccccccccattcgtagaccttttttcacctgtatgctttcattattgtcattttttttattgaagtttTTATGAATTTTTATAACACGCAGGGATTTTGCCATGTGATTTGTGATTACTACCAAGCATTGTAACAAGTCATTTGTGCTCGGTATTGATGCCATATAGGAACTGGGAAGCGTTGGTACAGGATTAGTGTGGTATATTCAAGTTACTCTTGTATACTGCTGAGCCAATTGTTAATGTATGGTGAAAATTGTAGGGAAGCATTGAAATCCAATGAACATGTGTGTAGAGATATAGAATTACTAGACTGGCCGAAAGATCTCTTGGTTACTTTAAAACAGCTTTGACCAATATGATACCCAATGGGGCGTGCACAGAATATATTAACCAGATATTCTAGAATTCTGCCGTTCCCATGGCCCTTGGAAATCCTTGAACATATTTGCCATAAAGTATCCCAACATTTCGTTGAAAAGAGCTAGACTTTTAAAAGTACTTTTGAATGAACAGTGAATTCCATTAAGATGTCTATCTTTCTGTCCAACTCACTTGTTTGATGCAAGTTACTTTAAAGCCTCTTCATGTCAGTGTCTGGATTTATCACTGGCCTACATCGTAAGCCCACTTTCAAAGCCCTTTGGTGTACGGAATTCACTGCCAAGAGCATCTCCGTGTGACGCAAAATGTTTTGGAAGTAATATAACTCAAAAAGTATTTCCTTTGCCCATTGTCAAAGGGGCCCAGTTTCAGATATATTTGATGAGTGCAGCAGTAAGTAATTTTACATTTATCTTTATAGTGGCATTGAAAACTAATATTCATGATATAAAAAACTACTTAAGTGGGGCCCCATGCCTCTGCCCCGTAGACTGATTTGAATGATTTAGCCAATCTAGTAATTGTATTTCTGTGGCGTGTGAAAACATGGCATTTGATTAATGAAACTGGAATGGAGCGTAGTTTGTTATTTTGAGAAATGTGGAGGTAGATCCCGCTTCTCACCAGCTAATTCCTGCCTCTAGCAGTCAAATCCAAAAATAAATATCAGGCTGGAGTTTTGAGGTGCTTCTAAATTACACAAAACACGCAGAGGGAACTCCATTAAACTATGGTTGATGTGAGATTTTGTTAAAATATCAGTGACTCACAGCCCGGTACTGTAGGTTAGTAAATATTCATATAAGGCAGACAGTAAATATGAAAAGGTTTTAAAAATAAGGTCAACATTCACATGTTAACCTCTACAGGTATGCTCATTTTAATTTAGTTCAGTCATCGAAGACTATATTATATTCATTGCTCCAGGAGTCGCATAAGTAGCTTACCACTCAAGTTGAACTGAAGTCCCCACATTTTTATTGACTTTACACACCCATCTGGAAAATAGTATTTCTGTGTGAATTCCCCAGTTGAGAAAGGTTTCTGACACTATCCCAGAGAACTATCACAGGAATATCACATAATAAAAGTTGCAGGTTGAGACCCTTCAAGCAACGCCCTTAtgggtaaaaaataaattaaaaagcagGGGGTTACTTATATCTGGTAAAATACAGGTAAATTCAAGCAAAACCAGTCCCGTGTGAATGGCGGTATACTCAAGTTGTTATTCATATGCCCTTCCACCAGACTGCATTCGTTGTGCATTCATTTCCAATCCTCTGGAACTGGAGAAGCAGAGGGCAGGTACGCTCTTACTGCAAGCCTATAGATTCATTCCGTTGCCATGGTTGTTCTCATTACTAAGCTGTGATCCGGAGTGATCAAGTATGTAATTAATGAAGTGAGTGAATCACAAGAGTAGCCGAGAATGCTGCTTTCATATAGTCTGTATTACTGTGTATTTTAGTGGGAATGATCCTAAAATGGAGTTGCATTCAAActagtctttttttaaaaatggcagtcAGTGTATTGGTTATTTTGACCACCTAGCGATGTGGTCGCTACAGAGAGTACAGTTGAAGCATTTTACTTGACTTGTGCCAGGATTGCATTACGCCTGTGGACTGTCCTTAGTCAACGGGTTAAGCTTCCATTGGCACTGGGTCGCAAGCAGTTTTAGGAAGTAAGACGTACCGTCCGTCAAGGTAGCCGTTTGCCGTCCGACCTGGCACAGACCCTGTTTGAGTTTGGTTTGCCTCAATGGGTTTGTGAGCTCGCTGGTGTTAAGGAGGCGCTGTGCCTGGACTAACGGCGCAGCTGTTATGCCAAACAAAAACTGAACTTACACATGGACTGAGAAACGAGAAGGGATGATTGACAGAGCATAGGACACTTTTATCATTTCTGTATCATGTATGCTGATATATTAAACTCCTGAACA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01363	FYVE	FYVE zinc finger	Domain	Interproscan
PF02263	GBP	Guanylate-binding protein, N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000306	Domain	FYVE zinc finger	Interproscan
IPR000315	Domain	B-box-type zinc finger	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR015894	Domain	Guanylate-binding protein, N-terminal	Interproscan
IPR017455	Domain	Zinc finger, FYVE-related	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR042427	Family	Zinc finger FYVE domain-containing protein 1	Interproscan
IPR047855	Domain	Zinc finger FYVE domain-containing protein 1, second B-box-type 1	Interproscan
IPR047856	Domain	Zinc finger FYVE domain-containing protein 1, first B-box-type 1 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46624	AGAP002036-PA	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005545	Molecular Function	1-phosphatidylinositol binding	Interproscan
GO:0005547	Molecular Function	phosphatidylinositol-3,4,5-trisphosphate binding	Interproscan
GO:0005811	Cellular Component	lipid droplet	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0032266	Molecular Function	phosphatidylinositol-3-phosphate binding	Interproscan
GO:0043325	Molecular Function	phosphatidylinositol-3,4-bisphosphate binding	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0140042	Biological Process	lipid droplet formation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-