| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| SKAU_T00329400 | PRE-MRNA CLEAVAGE COMPLEX II | CM056389.1 | 33366296 | 33397128 | - |
| CDS | |||||
| SKAU_T00329400 | |||||
| Transcript |
| SKAU_T00329400 |
| Protein |
| SKAU_T00329400 |
| Gene family | Subfamily |
|---|---|
| - | - |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00619 | CARD | Caspase recruitment domain | Domain | Interproscan |
| PF00653 | BIR | Inhibitor of Apoptosis domain | Domain | Interproscan |
| PF04818 | CID | CID domain | Repeat | Interproscan |
| PF11526 | CFIA_Pcf11 | Pcf11, Clp1-interaction domain | Domain | Interproscan |
| PF13920 | zf-C3HC4_3 | Zinc finger, C3HC4 type (RING finger) | Domain | Interproscan |
| PF20845 | Pcf11_helical | Pre-mRNA cleavage complex 2 protein Pcf11, alpha-helical domain | Domain | Interproscan |
| PF21290 | BIRC2-3-like_UBA | BIRC2/3-like, UBA domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001315 | Domain | CARD domain | Interproscan |
| IPR001370 | Repeat | BIR repeat | Interproscan |
| IPR001841 | Domain | Zinc finger, RING-type | Interproscan |
| IPR002014 | Domain | VHS domain | Interproscan |
| IPR006569 | Domain | CID domain | Interproscan |
| IPR008942 | Homologous_superfamily | ENTH/VHS | Interproscan |
| IPR011029 | Homologous_superfamily | Death-like domain superfamily | Interproscan |
| IPR021605 | Domain | Pcf11, Clp1-ID | Interproscan |
| IPR041933 | Domain | BIRC2/BIRC3, UBA domain | Interproscan |
| IPR045154 | Family | Protein PCF11-like | Interproscan |
| IPR047415 | Domain | Pcf11, CID domain | Interproscan |
| IPR048830 | Domain | Pre-mRNA cleavage complex 2 protein Pcf11, helical domain | Interproscan |
| IPR048875 | Domain | BIRC2/3-like, UBA domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR15921 | PRE-MRNA CLEAVAGE COMPLEX II | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0000993 | Molecular Function | RNA polymerase II complex binding | Interproscan |
| GO:0003729 | Molecular Function | mRNA binding | Interproscan |
| GO:0005737 | Cellular Component | cytoplasm | Interproscan |
| GO:0005849 | Cellular Component | mRNA cleavage factor complex | Interproscan |
| GO:0006369 | Biological Process | termination of RNA polymerase II transcription | Interproscan |
| GO:0006378 | Biological Process | obsolete mRNA polyadenylation | Interproscan |
| GO:0031124 | Biological Process | mRNA 3'-end processing | Interproscan |
| GO:0035091 | Molecular Function | phosphatidylinositol binding | Interproscan |
| GO:0042981 | Biological Process | regulation of apoptotic process | Interproscan |
| GO:0043130 | Molecular Function | ubiquitin binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-Yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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