Gene detail

Detailed information of SKAU_T00319940 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00319940	SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM	CM056389.1	2856538	2863113	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00319940

ATGGATGATGACCATATCCAAGAAATCCTGACTCAGCTCTGCAAAGCAGTTTTCCAGTCAAAAGGCTGGTGGCCATCCCGGAGTCAGATGATGTGCTGGTGTGCAATCGTGCTGTCTGAGAAAAGTCAATCACCAAAGCTGGTTGGTTTTGAAGAAGACCCGTGTGTCACAGCCATGGTAGCAGCAATGCAAATCTGCACAGGAAGCAAATTAGATATTGTGCTAAGCTCTGGTGCTCTTTCAGTGCAGGAAACCAAGGAGTGGACTGTCTTCTACAAGCATCTTGGAATTTCAATCAACACAAACGGGAAGAAGACTAATGATTCATATAGTGATGTTTTCCAAGCAGACATTGTGTATGGTGCCATTGAAGACTTTGTCACTGATTATTTTCAATACAGCTTAGAGGTGATGGAAGGAGGACACCCTCAGCTTATTCGTGGATTTATCATTGAAAAAGGATGTCTCAGTGCTGGCCAGAATCTCAACTTTTCAAGACTCAAGGATAATGAGGCCCTGGGGTTTGTAGCAGAGGAACTGCAAAGCCTCATGATggacacaaacaccaataaaacCAAAGATACAGATCGAAAGATATGCTACCAGAAGGATATAATCTATGGAACTGTTGAGACCTATGCTGCAGATCACCTTCGACAGACATTTGAGATGAAGGACGTGAGGCCTGATCGCAGGTATGAGTGCATCATAATCGATGAAGTGGACTTGCTGCTTCTGGACCAGGGAATACaggtgacctacctgtccagtcccatGGCCTCCATGCAGCACCTGAACATTATTCTGACCATGATCTGGGGCCATGTATACCAAACTGGGAGAGCAGCCCTGGTGATCTGTGAAACTATCAATAAAGTGAACGATCTCTATGAAGAGCTAAAAGATAGCATCCCAGGTGAAGTTATTATCTATACACGCAGTGACACAAACAGCTTGGGCGCACTAAGTAGAAAACTGAATCCTGGTGATGTGGTTCTTGCCACAAATCTTGCGGGGCGTGGGACAAATATTAAAGTCACTAAAGAGgtgaatgaaaatggaggattatttgtGATCCTCTCCTTCCTTTCTGAGAATGAAAGAGTGGAACGCCAGGCCTTTGGACGAACCGCACGCAAAGGTAACCCTGGATCTGCTCAGATAATCATGTCTATTGATCATCTACAAGAATGTTACAGGACAGTGTATTCTATGGAAGAAGCTAAGAACATGAGGGATAGTCTTGCAGTAGAGAAAATACAAGACATGCAGAATGACATTGATGAGATGAAACTGCGAGAGGACCTCTTTTCAGAGTACTGCAAAACCCTTAGGGAGATTTACAAGAGCACGGAAGAAGATGAACAGAAGGCTATTGTCGCCATCATGAACGAGTTCTGGGGGATTTGGCTGCTAACAAAAACAGAAGAAATTGACCAGTTGAAGAGAAAAGAACTGCAGAAGAGCTTGAGGGCTGATTTGGCATGGGCAAAGAAGCAGACTGAAAGTCAGAATTCCCCCTCCTCTAGCATTTATCATTATGTCAAGTTTGGGAATATTGCAATGAAGGACAAGAAATGGGATGTCAGCGCCAGGCTCTTTCATAAAGCCTTTCAACAAGATGCAAGTTGGGCAGCCATAGCACTTTACAATCATTCATACTGCATTATAAAGCAGCAATCAGGAGATTATCTCACTAAAGCCAAAGATGACCTTAAGAAGGCACAAGATTCTCTGAAGTACTTTAGTGAGGAATGTATGGCTGGCCTGAGTTTTATAAAAATGTCCCTTCCCAAATCTGCAAAGGGTAAGACCAGCAGCCTTGAAAAACAGTTCACCACCAAGTGCAACATGCTCAGTTACCTTAATAAAAATATGAGTGATGCCATCAAGAAACTGGATGAAATTAAAGGAAAGGGGAGGGATGCTCTTGCAAAAAAAGCTCCAGTCTTCACCCTGGTGTCAGATTCTGAAGAAGAGCTCCAAATGGAAACCTTCAATCTCTACGATCGAGGTCTGAAATACATCTTTACTGTGGAAGAGGAGCCTCGTTTCCCATGGGAAGCTCTGGTGGTGTTCCTTCTCGGTGTTTTACAGATTGTTGGAGGGGCACTGCTCACTGCATTTACATTTGGTACAATGGCCCAAGTCGGTATGGGACTAATCGCTGAAGGAATCTCAGACTGTATCACTGGCATAGAGTCTATGATAACAGGAGAATTCAGCTGGGAATCATGGGCAATAGATAAAGCCATTTCTATTGGTGTCTCTCTCATTGGGTTTGGAATTGGAAAGCTGGTTTCAAAGGGCTTCAAAGCTGCTAAAACGTTATCAAAGGGATTTAGCAAATCGCTAAAGACAATGCCAAAGTTCTTTGCCAGTCAGGCAAAAGAAGGCTTTAGTGTTGCTATGAAGACCAATATGAAGAATGCAGTAAAAGTCGCTGCTAAAAAAATGGTTGAAGAAACAGTTGCCTACGGAATTGAGAGGGCAGAGaatgaaataattaataaaatactaGAGGAAATAGAAAAGGCAGTGAAAAATGGAATCCTGAATGAAGTGAAGACCAATATGGGAAAGGATCCCCTGCATGCATTAACAGACTCAATTATACTCTCACACATTGACAACAAACTGGAATTTAATGACCTCTTGAAGAACATCACAATGAAGAGTCAATTACTGACCATTTTCACAGAGCTAAGCGAAGGTGCATTAGCGCCATATTCTGCAGACCTCGGCTGGCAGAACCAGCTTAGCTCATCCATCACCAATGTGATTGACGTTGTTAAGGAAGATGCTGGAGGAAAAATGAAAGCAATTCTGACTGCTATCCAAGTGACCCATATGGCAGTACTGGCAGCAGATGCTGTAAGTTCAGTGCTCACCCTCGCAGACAAATTCTTTGATGGTCTGTGTAAAGGGCTGGAAGATTTTCGAAAGAAAAAAGGCTTATCTCAGAAAGTGAAGGCAAGTGACCTATCAGCTGCAGAAAACAAGATGCTGAATGACTTCAAGCAGGAAATAAGCGACAGCATCAGCACTTTACTGGCAAAGGCTTTAGTTGAGTTGTTCCACCAGAAGTTCTCCAGTCACATAGTTTCTATTGCTCAAGGCAAGTTAAATGATGTCATTGGGAACTATGTGAGCTCGGGTTTAAACACTGAGCACACAGAGAAAAAACTCACAGCTGCACAGGAGAGTACATATAATGCACACATGCCTGGAGATAAGCAGGCAGGAGGGTCAGGTGAACAGTCAAAGTCGCATGCTGAAAAGGTCAAGAATTCAGAGATGACTGGTAGCAGTGTTGATATTAGTGTTCTGTCAGAAGCCACTGGCACTAAGGTTGTGATCTTAACAGAGGATAAAAATGGAAAGCTTACCAAAATGCAGGAGATGAACCCCAGCACTGAGGATGCCAGTCAAACTGTGACACTCATCTATAGGCCTAAGAGTGATGAACACCCAGATGGACATTATGATGtgcttgtcaataacaagacagTGAGTGTAGAGAAAGGAGACGTATATAACGCTATGGCACACGGCATGAGTCCAGACGCCAGTAAGGAAGACATTGCATCTGCAGCAGATGACCTGCGAGCTAAGGAGGCTGAGGCCCTTGAAGAAAAGCCAGCCCACTGGGAGGCTTTCCTCCAACATGAAGAGTGGATTGAAGAACTCATAATAGGGGCCTGGTTCATATCAGAGGGAGCTACATCATCAATGATGATAACTTCACAAGACAAAATTCAGAATGTGATGAAGCAGGAAAGATGTTAA

Transcript

SKAU_T00319940

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07517	SecA_DEAD	SecA DEAD-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000185	Family	Protein translocase subunit SecA	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR011115	Domain	SecA DEAD-like, N-terminal	Interproscan
IPR014018	Domain	SecA motor DEAD	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR30612	SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006605	Biological Process	protein targeting	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0016020	Cellular Component	membrane	Interproscan
GO:0017038	Biological Process	protein import	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-