Gene detail

Detailed information of SKAU_T00318900 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00318900	F-BOX ONLY PROTEIN 22	CM056388.1	39002622	39017739	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00318900

atggatggaaatgtTGAAAATCCATGCGCAGCATCTGGAAGCCAGGCTGGTTACGTTCTAAGTAAtgtggctgaagtggtggagagaaTTTTGACGTTTGTTCCAACCAAGTCGTTGCTTCGCACAGCTTGCGTTTGCAGGCTGTGGCGGAACTGTGCCCGGCGGGTGTTGAGGACTCAGCAGCGGGTTGCCTGGGTTTCAGCCACGGGGTGCGGCAGCGGCAAGGGCCACGTCTTGCACAGGAAGTTGGCAGAGGAGATGGAGAACATGTACTTGCTGCCACAGACAGTTTTGTTAATGGCAGACTGCGAGACCATTAGCGGACAGGACTGTTGCTACGGGCAGAAAAAAGTGAGGAAGACGGACAGCTCAGAACTGGCGTTGGAGCTGAATGCACTGTTCCCCAGGGGCTGTGAGATTCTGGGCATGGCAACCTCAGGAGTTGTGTTGACCCCCAACGGACGGTACTCCAGCCCTCCCCAGGAGCACCAGGACGGGGAGGCTGGCTTTGCGCTCATGTTCCCCGGCATGGATGGAGTCACCTTGCGCCCTTTCCACTTCTGCAAGCGGAGCCTCTCCCAGACCGCGCTCGAGGAAGCAGGGCTTGTGGGTAACCCAGACCTGCGCGTGGTCCTCCTCTTCGAGTACGAAGCCTTTAAATCCAGAGCGGCGCGCTTCCTCAACAAGGTCCTGGAGCCGCTGGCGCAGAGCAACGCACTCATTGCAGGGGGTCACGTGGAGAACGTCTTCACCCCCTCCAGGGAGTGCTGTGGGCGGGGCTGTTACGGCATGACGGGGCTGGCGCTGAGCGGCTCGCGGATCCAGGGGGCGTCGGTCCTGTTGGACCAGGACGTGGTGAGCGAGAAGTCGGCCGAGGCGACCCTGCAGCGGCTGAAGGCGGCCAACATCCCCGAGCGGAACACGCTGGGCTTCATGTTCGCCTGCCTGGGCCGCGGCCACAACTACTATGGCGGCAAGCGCAACGTGGAGGCCGACGCCTTCCGCAAGGTCTTCCCCAACACGCCGCTCTTCGGCTTCTTCGGCAACGGCGAAATCGGCTGCGACCGCATAGTCACCGGGAGCTACACCCTGAGCCAAACGGACACGGAGAGCCTGCAGCACTCCTACACCACCGTCATGGTCCTGGTGCATCTGGGGTGACCCCTCCCCCCAAGGTGGAGCTTACCGGAGGCTCCAGGAACGTTCCTCGGGTGGGACGGAGGCAGTCTGCGAATGGGACCATTACAGCGGTCAGTATGCAGCTCAACTGCGTCACGGCAAccgagatttattttatttttttcccgccCCTTCGTGGGATCACATATCGAGGGAATCTCTCAAACGTGAGGTTGCGATTTTGGCGCGTTTCAATTTGCTTTCACAAAGTTATTGCAAAAAATCACCCCAGTATGCTGCTCTCCAAAAATTGTTGCAAATGACCCCAGAATCAAGGCAGGGAGGGTGGTGTTAGATTTCTCAGCAAAAAATGAAAAGTTTCTCTTGACTCACATTAAATCACCATTCTTTCATGGCTGTTTTTGAACACCATTTTGAAAGTGGGCATAAAAGACCAACTATAGGAAGAACAACCTGTTCTGACTACGGGTCTACCAGTGTTACTGTGCCAGCTGGGGCATTGTAAGCTTTTTATGAGAGACATTTACAGCTGTTGTCCTATTGGAAAAGAGAAGTGCGAATTACCACATTGCTCTTTCCCAAGGAATACTTCTTACCATTTCTGTTTGAATGTGCAGTAAGTCAAGGATATCTTTCCACTTTGGATTTGAAGATAAATTCCTCCCGATTCAACACGCACATGCGCgtgctcacactcactcactcactcactcactcactctcactcacacacacacacacacacacacacacacgtacgtaaaCAGACATAGTAAAAGCAAGTTTGATTTGTTTGAACCATACTGATTTGTGTGGTTAAAGCAATTCATAGTAATTGGTGTTTTACATAAACACACCCCTACAGTTACTGTTTACTAATGTAGGGGCATCAAGAGATGAGCTTcaattttctcctttattttggTTCATCCTTCCTTCTTCTCTCTGATATTAGATCATTTCTTGATTGGATTCCTATATGTCAGTTCATTAAATCAGTTCAGACTTCTATTGTATTTCTATAGTTGAACTCTTACAGAGTTCTTCAGTTCACTTTTTCCATTTAAGGCCACAAAGCAATATAGTAATGACCTGTCAAGGTAGGTACATGTATCAGTCTTACAATATAGTTCTAAAATTAGCTTTATTTATTCACCAGAATTTCACTGTATGTGTAATTTTAAAGACTAAAAGAGCATGTTTTATTCAACAAACATCTTGATCAAAAGTGTATTTCCCGTTGGTGTGCTTACGCATTGAGTTGGATATTGTGCCTTGCTTGGCATTTGGTTGTTTcagtatatgtacagtgccctccactattattggcccccctggtaaagatgagtaaaaagggttataaaaaataaagtaatcatttttaatatttggtcgcatatcctttgcatgccatgacttcctgatgtctgtgacccaacaacatcaaaagactcttgatatctt

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00646	F-box	F-box domain	Domain	Interproscan
PF10442	FIST_C	FIST C domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001810	Domain	F-box domain	Interproscan
IPR011539	Domain	Rel homology domain, DNA-binding domain	Interproscan
IPR019494	Domain	FIST, C-domain	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14939	F-BOX ONLY PROTEIN 22	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0032436	Biological Process	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0048742	Biological Process	regulation of skeletal muscle fiber development	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-