Gene detail

Detailed information of SKAU_T00304100 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00304100	ATP-DEPENDENT RNA HELICASE DBP3	CM056387.1	38515452	38541967	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00304100

ATGGCACGCGAACGCAATGAGAGCTGCTCGTGCTTCCACCTGTTGAGTACAACAGCCATGTTCTCTCTGTCGGAGCTCACGTCCCTCCCGGAGTGGCAGGGCGGTTGCTATAAGCTGCTGAAGCCGTGGTGGGAGGTGTTTATGGAGTACCTAGTGGTGGTCAtgctgatggtgtctgtgctgGCGGGCACCCTCCTCCTGGCCCGGGACGGAGTGCCCCCGATACCCCACCTGGCCCCTCCCCCGGCCAATCACCATCACAATCACACCCCTCATCCTCAAACGCGGGCTGAGCCTCCGGTCCAGGCCCCGCCCCCCAGGGGCAGGCGCACACACCTGGACTACCAGCAGTACGTGTATATCGCCCAGTCCCTGGTGCTGCTGGCCAGCGGCTGCTTTTGGTTCCACTTCCCCCGCACGTCCGCCCGAATCGAGCACTTCTTGGCCATCCTGGGCAAGTGCTGCGAGTCTCCCTGGACGTCCCGTGCCCTGTCCCTCACCGCCCAGCTGGAGAGCACACAGACCCGGGCAGAGGGGGGGCAGAACGGCTGGTGTGGTCACGGGCGGGGCCGGACCCAAGCCGCCGCCACCCTCCCCACCCCGCCTCTCGCTCCCCCTCCATCGCAGGCCAGTCCAGCCTGGACTCAGGCACTGACAGCCCCCTGCTGGCCAGGTCAGcACACCGCTCCTACACAGGACAACACCCCCCAGACGTCCAGCCTGGACCGCAGCGATGGCGAGCAGGCCAGAGCTCTTTTCGAGAGGGTGCGCAGGTTCCGTGCACATTGCGAGTCGTCCGATATAATCTACAAGGTGTATATGGCCCAGACTGTGTTTAAGGTGCTGAAGTTTGTGTTGATTGTGAGCTACACAGTGCCTCTCCTGGGCTCCATCTCGTTCAGCCATGTCTGTGAGCCCCAGGCCCACGCGCTCACGGGCTACAGCGCCTTCCTGTGCACCCACAACCTGGCCTCAGTCCTGCGCAAGCTACTGCTGGCCTACATGGGTCTGCTGGTGCTGTTCGGACTGTTGGGGATCTATACACTCTGCTGGATCtgccacagGTCTCTGCGGCGGTACTCGTTCCAGCGCGTGCGGGAGTCGGGCGTGCGGGAGCCGGGCGTGCGGGAGCCGGGCTCCATGCAGGACGTCCCGGACGTGTGCAACGACCTGGCCTTCCTGCTGCACATGGCCGATCAGTACGACCCGCTCCTGGCTCAGCGGCTGTCCGTCTTCCTGTCGCCCGTCAGCGAGACGCAGCTGCTGGAGGAGAGCCTGGACCGCCAGTGGGACGCCGAGCGCCTACGCGCCatgatgacctctgacccccatgGCCACGCCCAGCTGCAGCTGGTGGCCCTTCCCAGACTGCCCCGGGCCCTCTCCTCCCTCAGCCAGCTGCACGTGCTCAAGCTGGAGCTCATCGCCAACGCCAAGCTCACCGCCCAGGTGTCCAACATGACCTCACTCAGGGTGCTGCACCTGTACCACTGTCCCGCTGCGGTGGAGCCTGGAGCCCTGGCGGTTCTCCAGGAGCGGCTGGAGGCCCTGCACCTCACCTTCACCCAGGCCTCGGAGATCCCCGGCTGGGTGTACACGCTGCGCGGCCTGCAGGAGCTGCACCTGACAGGCCGGCTGGGTGgagagggcggggcagggggaggggcctcGGGTGGGCGGGGCTGGGCGCTGGGCAGCCTGCGGCAGCTGCGGCACCTCCGGACGCTCGTCCTGCGGGGGGCGCTGTTGCAGCGCGTCCCGGGGGAGTTGGCGGAGGTGGCGGGCAGCCTGCTGAGGCTGGAGGTGCGTAACGACGGGGCGCGGATGCTAACGCTAACGGGGCTGCGGCGGGTGGCGGGGTTGGCGGAGCTCAGCTTGCAGGGCTGTCAGCTGGAGTGCCTTCCCTCCGCCCTCCTGGCCCTGGGCGGTTTACGCGGCCTGGACCTCCGGCGAAACGCCCTGCGCACCCTGGAGGGCCTCCTGGGGCTGCAGCACCTCCGGCGGCTCGCCACTCTGCAGCTAGCGCACAACCGCGTGTTAGCGCTGCCGGCGAGCGTGGGGATGCTCCGGGCGCTCGAGCTCCTGGACCTCAGCCACAACCACCTGCGGGGCCTGCCGACGGCACTCTTCACCCTGCCCCGCCTGCGCTGCCTCCTGCTGGCCGGGAACCTCCTGGAGGAGCTGCCGGCGGAGGTCGCGGCCCTGACGCCGCTGGCCGAGCTGGACCTCGGCGGGAACAAGCTGGAGAGGCTCCCCACGGCCCTGCCCGCTCGCCTCCGCACCCTGGACGTGTCCCGCAACTCCCTGGGGGCCCTCCCCGCCGGTTTGGGGGCGCTGGGCGAGCTTTCGCGGCTGGACGTGCGCGGGAACAGCCTGGAGGCGCTGCCCGCGGAGCTGGGGGCCTGCGCGGGTCTGCGGGGGCGGCGGCCTGCTGGCCGAGGACTGGCTCCTCCTCTCGCTGCCCGCCTACGTCCGGGACCTCCTGCTGCAGCCCGACTCCCCCCGCCCCCGCCGCCGCCGTCGCCGTGGATACGCACTCCCGCCCAAACTCAGACACCTTCCCCACATTCTCAGCAGCTCAGTGGAGCTTCCTGTCTGCTCTGGAGTCACGGATATAGATATAGATACAGATATAGATCTGTGCTGGTCTGTGCATCCGAGTCCTTGAAGGCGGTAGTTCCGGAAATAAGTATAAACTTGAGGCCTGTACATGTGGAGCGGAGCGGCAGTCTGAGCAGAATTTGTAATATCATCGTAAGAATGGCCGAGAACGACGTTGAGAATGAGCTGCTCGACTACGAGGAGGACGACGAGCCGCAGGGAGCCCCGCAGAGCGCCGTGCCGACTGGCCAGAAGGAGGTCAAGGGCTCTTACGTGTCCATCCACAGCTCCGGCTTCCGCGACTTCCTGCTAAAACCAGAGCTGCTCCGCGCGATCGTCGACTGCGGTTTTGAGCATCCATCAGAAGTGCAACACGAGTGCATTCCTCAGGCCATCCTGGGCATGGACATCTTGTGCCAGGCCAAGTCTGGGATGGGGAAGACGGCGGTGTTTGTGTTGGCCACCCTGCAGCAGATCGAACCCGTTGACGGACAGGTGTCCGTGCTGGTCATGTGCCACACGCGTGAGCTGGCCTTCCAGATCAGTAAGGAGTACGAGCGCTTCTCTAAGTACATGCCCACGGTGAAAGCGGCGGTGTTCTTCGGCGGCCTGTCCATCAAGAAGGACGAGGACGTGCTGAAGAAGAACTGCCCGCACATCGTCGTGGGCACGCCCGGTCGCACCCTCGCCCTCATCCGAAACAAGACCCTCAACCTCAAGTACGTCAAGCACTTTGTCCTGGACGAGTGCGACAAGATGCTGGAGCAGCTCGataTGAGGCGTGATGTTCAGGAGATCTTCAAATTGACGCCCCATGAGAAGCAGTGCATGATGTTCAGTGCCACTCTCAGCAAAGAGATCCGTCCCGTCTGCCGCAAGTTCATGCAGGACCCCATGGAGGTGTTTGTGGACGACGAGACCAAGCTGACACTACACGGCCTGCAGCAGTACTACTGCAAGCTGAAGGACAGCGAGAAAAACCGCAAGCTCTTCGACCTGCTGGACGTCCTGGAGTTCAACCAGGTGGTGATCTTCGTGAAGTCTGTGCAACGCTGTGTGGCACTCTCCCAGCTGCTGGTCGAGCAGAACTTCCCCGCCATCGCCATCCACAGAGGCATGGCTCAGGAGGAGAGGCTGTCTCGGTACCAGCAGTTTAAGGACTTCCAGCGGCGGATCCTGGTCGCCACCAACCTGTTCGGCCGCGGGATGGACATCGAGCGCGTCAACATCGTTTTCAACTACGACATGCCCGAGGACTCCGACACTTACCTGCACAGGGGAAGAGTGGGGAGAATGAAGCGGGACGGGCCTTTTTCCATTCCCGCAGAGCCGGCGTTCCGGTTTCACCAAGACGCCTCCCTAATTGtcacgagCTCCGCTCACTCACTGTCTGGACGGGGCTATTCGGAACCGGATATTTCTCCGGTTGCCAGGCGCCCGGCTCCCTTATCGCGCCTCGCTATCTTGCGGCGTCGCATCCTGGGGCGTCTGAGGGCAGATTGGGGTCCCGTCTCCGAGGCCATCCTGTTTGTCGAGGCGCAAAGGGCCTTATCTACAGACGCTCTGGGCCTTATCTACAGACGCTCTGGGTGCTGCGGGTGCGGGTGGGGGCGCTGA

Transcript

SKAU_T00304100

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF12534	Pannexin_like	Pannexin-like TM region of LRRC8	Family	Interproscan
PF13855	LRR_8	Leucine rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001611	Repeat	Leucine-rich repeat	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR003591	Repeat	Leucine-rich repeat, typical subtype	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR021040	Domain	LRRC8, pannexin-like TM region	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0006406	Biological Process	mRNA export from nucleus	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-