Gene detail

Detailed information of SKAU_T00298720 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00298720	BOULE-RELATED	CM056387.1	27207659	27213601	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00298720

AAAGACTTTTCGTGGATCGATGCCTTACcttgccaaaaagcaaattacCCGCGCTAAGGTTTCTGGCATTGATGTAAGCATGCATTAACTCGTTAGAAAAAGCTTTAAACGACAAATTAGTCAGGTAggctgacacaatttttgtttttttgtttgtttttttgtttgtttttttcgatCCAGGGTTCACACTCGGGACGCCAGAGGGGAGGGGTGGCAAAGTCGAAAGTGTTCAGTTACCAAAAGGGGTGGTACATCGGTTTGCCTAAAGTCATTTAAACACAATTATAATTTCATGTAGCATATAATGCCGGTGTAACTGTTACATTTAAAATACCGTCGCCAGTTCAAACTGCGTAACCGCGAACACCCCCATTTGGAGCCCGGTTTGGACTTTTCCAATTAGGCTGAAAAGGCCGCTGGAGGCGGAGCTTCGGATCCTCTGGTACTGGAGGGAGCGTCAAGCGTTTCCCGCGGAAAGAGTTTTATGTGTGGCAGGCAGCGAGAGATTAATTTATTCAACTATTTTTTAACCGTTTTAGAAATGGAGATTCAGAAGCAGAAGAATGGATGTCAGATGACAAATGCACTGAAACTGTCCAATGGATTCATTTTACCCGAAGGCAAAATGACGCCGAACACGCTCTTCGTCGGTGGCTTCGATATGAAGGTGGATGAAAACGAAATCAAGGACTTCTTTGCTACCTACGGCCTGGTAAAGGAGGTGAAAATCATCACATACCGCGGTGGTATATGCAAAGGATATGGATTTGTGTCTTTCAATGAAGATGTGGACATTCAGACAATCATTGAACAACAGCTGAGTTTTAAAGGGAGGAAACTGAAGCTTGGGCCGGCCATTATGAAGGAGCGCAGTGCGCGCTCAATCCAGTCCCCAGCTAGTAGGCCCCTCCCCTTGGGTGGGGGGGCCcacccagtacatgtactgcagCTGTTGCAccccaccagcagggggcgccccCCAACCCTCCTCCCTGCTCAACGGGGGCGTGCAGTACATACAGccgtaCTCCTACTCCAGCCTCCCCAGTGTCTTCATCCCACAGATGCCCATGAGCTACTCACAAGCTGCCTACACCTACCAGtatgcATCCCCTCATTGGTCAGGAGAACAGAGGACGCGACTCGTCAATCAGAACTTTGTGGACTGTGGGGTGCAGACACTGTTGACTCTCCTGTAGCTGCCCTGGGTGTTATGCAGTAAGTGGCGGCTGGAGGGTAAACATCCTCAAGAGAAGATTAGACTTTTTAAAGTGAGACCTTCTGGGATGTTCCCCTCAGAACATTTTAAAGCCGTGGGAAGGAAGTGGGAGATGGGGCCACAGGAAGTACCCCTGATCTTCACAGGAAGTGCCCTGGACTACACATGGAACTATGGACCTCTACCTGGTCCGACTCTTTTAAAAAGCGCTTGACGTTAAACCATTTGggggggaaataataataataataattaaaaaagcaCCTGGTTTGTTCTCATCTCCCACTTTAGATTTATGGTGGGGCTTTATTTTCCTTTGATTAATTTCCTCCTGTGCCATAGACTTTTTAAAGAAAACTCACCTGTGGtatttatttacattatattttgtGTGATAATTTGTAATGTCTTTCACCTGTCTTAAGTGCCCTCTGCTCTTTGTTATACATGAGCTAACAGCCAGTGTGTTTTTGCATTGTTAGTTctgtactttattttttattaattgggATTCAGTTTTCAGTAATTTTACCCAAGCAGAAATCAAATGTGTGAATGATGTCGGCTGCTTTGCTCATTTTTTTCTTGGGTTAGAGGCACACGGTCGTGTGCGCTGCTCTCTGTCTGTGGGTTTAAGACTGCAGTAACTGTCCAAAGAGGCTTTGTTTTGTGCACAGATTCTATTTAACTAATATCACTGAAATTTAATTAATTTGGTGGCAGATTTTTTTAAGGTGGTGTTGGATGATACAGGAATATTATTTCTGTTCTGGAGCATAAATCACTTTAGTTCCCACTGAGTTTTTTGGGGTGTTTTGTTGGTTTGAATGCCTCTCACTGACAGATTATGAGCCGTTAAACCCAAAGTCCAATCATAGCGCCTATTCCAGTGAGGGGAGAGAGCACCACAGTTTCACTTTCactctttaaaaacaaaacaaaagaaaccacATTTACTTGCACCTtctgttctttttatttttttataaaggttTTGTTTGAGTTTGTTCACATTTTCAGTTTCATGTTTGAAGTTGCACTTAATAGGAAGCTGTTCGCTTTTCAGAGTCGTTTAAATGACGGGTGATGTCACATTGTATAGTTCAATCGGGAGCTTTATTTTTGTGTATAATGAAAAGTCTACTTTGTAAAATTTAAAACTCTTAATGTAGCATTAGTGCTTCCTTGCAGAGCTCCTGAGAGGGTCATTGGCTTGCAGTTGGGGGCGCTCTCCGTCGGGGTGGAGATCCTTTCGCTTCATTGTTTCTCAAATTCCTGCCCCCTCCCCCGGCACTGTGGCTGAGTGCGAGGCAGGGGATTGGTCGAGGTTTGATAAAGGCCAGATATTTCAACCTATCAGATTTGTCTTGTCTTGCCGGTGAACGCAGAGAGCAGATTGCCGCTGTTGGGTTTTGTGGTTGCTTCGTTTTTGTTGGGTTTTACAGTTGGGTCGTTTTTTTTGTTGTGGTGTTACCAGTGAATAATGGTTGAAGTTTGTGTTTCTGGtgttttgttgctttttttgtttAATTAGAAATAAAGTTA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11176	BOULE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003730	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0008494	Molecular Function	translation activator activity	Interproscan
GO:0045948	Biological Process	positive regulation of translational initiation	Interproscan
GO:0070935	Biological Process	3'-UTR-mediated mRNA stabilization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-