Gene detail

Detailed information of SKAU_T00298440 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00298440	HOMEOBOX PROTEIN	CM056387.1	26415648	26420349	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00298440

CTTGGTTGAGTGGTGCCACAGTGCAGCAGTACCGCCGAGAGAATTAGACGGGGATAGTCTCTAAGGATTTATACTCCACATAGGCAAATTCCATCTGTGTTTGCCGCGTTATTCTTCCTGAAGTTACACTTTCGGCAACTTCGGCACCGAGAGCTTGTTATATTATATTCGTTGGACGTTCCTGCTTCCAGCGGGCGGGCGACTCATGATGAGCGGACCGACTTTTGAGAAGAAGATAACGAGCATTTTGTCCGAACTCCCTGGCTCTATGAACTGCCACGCCGCGACCAAAGACTCTCCAACTCTGCCCGAGTCTTCTGCGACGGATATGGGTTACTACAGTGGACAACCGACGCACGGCCAACACGAATACTACCACGGCCAGTCGTACTCGCAGCCCATAAACCCTTACCCGTATCACCAGTTCAATCTAAATGGGATGGGGGGTGCGGGGGCCTACCCCACCAAATCAGAATACCCCTTCTCTCATTCATACAGACAATACGGACATTACAACAGGGACCTCCAGACGCCACCTCAGGACATAGttaaagaGGAACCAGAGCCTGAAGTGCGTATGGTAAATGGGAAGCCGAAGAAAATTCGCAAGCCGCGCACTATTTATTCCAGCTACCAGTTAGCTGCTTTGCAGCGACGGTTTCAAAAGGCACAATACTTGGCCCTCCCTGAGAGAGCCGAACTGGCGGCTCAACTTGGCTTGACGCAGACACAGGTTAAGATCTGGTTTCAGAATCGGCGGTCCAAGTTCAAGAAGCTGTACAAGAACGGAGAAGTACCCCTGGATCATAGCCCCAACGCCAGCGACTCCATGGCCTGCAATTCGCCGCCATCCCCGGCTGTCTGGGACAATAACGCTCACAGCAACcccgccagcagggggcagcttCCCCAGCCGCCACTGAGCTCCTCGCCATCCTATATGGAAGATTACAGCAGTCACTGGTACCAGCAAGGATCCCATTTACAGCACCCGGGATCCGTACATCACACTCCGCCGCCGCAAAGCGTGGGGGCAGTGTATTAATTTGTAAAGACTTTGTTTATATGtttcaaaagggaaaaaagacTTTTTTCATGCAACTGATTTCCATCATGATAGTATTCGACCCAAGCAATCGACttcaaaaagaagaaaataaaataataatgataataaaatataataataataataataataataataagctgacTCCGGGAATACACGTAAATGCAAGATACTGTTTTGCTTCGGACGGTCTGAACACGTGATTGAGGCGCCAGGAGAACCGCACCACTATAAGTTCCTACGACGTCCTTTGCTTATGATACCTTAGGCCTACTAAAAAGTGATATATGCTAGCATTTAAAagttcaaaatgtaaaatatatttttgtatatgtcgAAACTGTCAGCTAGTGTGCAAAGTGTCAATTACTGCAAAGTTCATAGATTTAGAATTTTGAATACATTGATAACTTAAGTTTGGCAATGCTTGCATCGAGTAATATCTATGGGGCTTGCAGTAATTTATGTATTTGTCATATGACATGTATTTAGACATATAAAATAGTCCTAAAATTAATTTGATTTAGGAAAATACACTATGTTTGCTTAAGGGTTATATCACTAGGCTTGTGACGTGCTATGTCttgtttttcttaaattattAATGACGGTTGTTTTATCATGTTCGTTGTTTAATGTCTAATTGTAGGAATTAAAAATGGCTCTCCTTGCAATAACTCAGTTAAATAGGTAGATCAAACAGGAAAAGCAAATATTTCAAACTTTACAGGTTGCCTACTTGTATAACCCATGGTAAATATAATGTAGGTAGAGTATAAACCAGTATGTGCTATATAAACTCAGgtcattatttatatattttgtaaaaaagaaaaaaaaaaagtttaaatctgTAAATAGAGCTTTGTTTTGTAAGAAAAATTAAACCACTAAATACACATTGCTTTTTAATTGCAAACTTCACTTTGGTGCTTGAACCTTTTAAAATAACT

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF12413	DLL_N	Homeobox protein distal-less-like N terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000047	Conserved_site	Helix-turn-helix motif	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR020479	Domain	Homeobox domain, metazoa	Interproscan
IPR022135	Domain	Distal-less-like homeobox protein, N-terminal domain	Interproscan
IPR050460	Family	Distal-less homeobox transcription factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24327	HOMEOBOX PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0009790	Biological Process	embryo development	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan
GO:0030855	Biological Process	epithelial cell differentiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-