Gene detail

Detailed information of SKAU_T00295040 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00295040	LIM/HOMEOBOX PROTEIN LHX	CM056387.1	18725237	18736108	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00295040

ATGTTAGGGACAGGAGATGCTCTGGGGCAGGCTGAGGTTGGGCTATTTGTGAGGAAGTGCAGCGCGTGCCTGCAGGTGATTGGTCGATCGGAGCTCATTATGCGGGTCCTGGGGCAGGTGTATCACCTGGACTGCTTCAGCTGCTGCGAGTGTGAGCGTCGGCTGCAGCGGGGGGACCAGTTCGTGCTGAAGGAGGGCCAGCTCCTCTGCCGCGGCGACTacgagaaggagagggagatgcTGTCCGCCATCAGCCCCACCCCCACCGAGTCAGTAAAGAGTGAGGATGAGGAGGGTGGAACCGGCTCGGCGGGGAAGGGCGATGAAGGGAAGGAACACAAGCGCTCCAAGCGACCGCGCACCATCCTCACCACCCAACAGCGCCGCGCCTTTAAGGCCTCCTTTGAGGTGTCCTCCAAACCCTGCCGCAAAGTAAGGGAGACACTGGCTGCAGAAACAGGACTGACAGTGCGTGTTGTACAGGTGTGGTTCCAGAACCAGAGAGCCAAGATGAAGAAGATTGCACgtcgacagcagcagcagcaacagcaggagcaggagcagctgGGTGGGGCCAGGAGAGGCTCCAGGAGCGGCGGTCGGCAGAGCAACGACGACAGCGaggATGGGTCCAGTGGTCATGCACTGGAGGGCTTATTGGCATACCCCTCGTTGCCACGGCAGCAGCTCCTTGCCTTGGATCCAAACATCTATGGAGGAGAACCGTTCCGCCACGGACTCACTCCCCCACAGCTGGGCCCTGACCAGCTACACTcctatgattCAGAGACAGTGTTCCATGATCTTGACAGCGATGGAAGCCTGAGTCACCTTGGTGATTGTCTCCTGGCgaccgcagatggggctctcctGACAGGGAGGGTGGGAAACCCCATTGACCGCCTCTACTCCATGCAGAACTCCTACTTCACCTCCTGACCCCTTAACTTCTGACCTCTGATCCCACCACAAACCCACACACCGATCCAAGGTGCAGCTAAGGCATGTCGTTCCACAAAGCCGGGACCTGCAGAAACGCCTCCCAAAACTCATCTCACTGTTGTCCATTTAGATCGGACTCATCTCACTGGTGTCCACTTAGACAGAACTCCTTCCACAGGTGTCTGTTTTCAGGGCATATCTCACTGATGTCCGTTTATACAGGACTCATCTCGGTAGTGTCCATTTAGATAGGACTCATCTCAGTAGTGTCCATTTAGATAGGCCTCATCTCAGTTGTGTCGATTTAGACAGGACTTATGTCAGTAGTGTCCATTTAGACAGTGCTCATCTCAATTATACTTGTTTAgacatagggccagattcagtatagtgtagtatattaCATAATGAGGGTTTAATGACCTTGGAACCTGGTGTCCAGACTCAAGTGATCTCCTGAGTTCTGTGGTTCAGGTCTCAACTCTCTCACAGTAATTCACCCTCTTTGTGGATTATATACATGGCGGCTTCAGGTCTCTGCTACACTGAAGAGCGTTAACTGTTGAAGATGGTACTATGTAACTGAAACATATGGGACTGGAGTTCTCCATGTTCTTGCCATCTGTATCACTGTGTGTTCTCCCCAGCATGTCATCGGTAAGCCTATTTCACATATGTGTGCTCCGCCCCCTGAATGGTATTGTGTTCCCAGGTGTGAGCTGCTGACCAAGGTTAAAATAGCAAACCCCGGCAGACACACCTAGACCTACACCGGCTTCACACTTGGAGATAGATGGGTCGCGTGGACGGCACACCGCCAGTAACGCTTCTGCTAGGTCAGAGAGTGCTTCCCAGGAGCGGATCAAGACGGAAATTTCAGCCCCACTCTCACCCAAAGCTCATCCAAAAGTGTAATTCTAAATCTCAGCTCTAATCTCACTCAAAATCTCAGACTCTGTTTCAAATCAAAAAAATTTGCAGATGGTTTCACTCCATTTTCGTGTCCACTCTCAGAAGGGttctaaaaggctcctctgtATCTCCATAGAGAAACCCAGTCTAGTTCAATGGTTCTTTGTTGGGCagaatctgggagctttcacacttttcacacctaccatagctggttccataaagaactacaaagaaccctttttttctgagagtgtattcgTGTGAAAGCAGACTGGAACTTTACCTTTATTCACATCACGTTACACAATGCAAATTATTACATGGATTTCAATTTGGTAAACTCAAGTTCATCATTGCAAATTGGAAGCTTTGAATCCTCACAGATCAGATTAACATATCTTGTGCCATTAGTATTCCCAAACGAAGAATGAGGAGTAAATGCTGTCCTAAAATGTTTTTACTAACCTGCATGTACAAGAAAActgtgtgggtctgtgatgtAAAACAAGGCCACCACCTCTCCTATCTTGCCTTCAAAAAATCGCGTAAACAGGGTTATTCAGGTCACAGGGTCATACAGAGAGCAAGGCTCAAAGGTAACAGGGTCATTTAAATAGAGTGTATAGGACAGAGTTGTCCCCCAtagaattgttttattttttgatgCGATACTGTGAAttgtacacaaaaaaaaaaaaaacgacaaaaaaataatttgtttgatTTGAAGGGGCGTCAACCACTACAGAGACCGTAAAGAGTAATATGATAGTATGTTTCGGATGTATAATAAATCAATGTTTtgttattaccattattattattgttgttgttatgatTACTGCTGTAAATGATGATGTCATTGTTCAGATTTGGACTTGacacccctttaaaaaaaaaaaaaactcactttgTTAGGTATTTATACTcttcctgtgcgtgtgtgttgaggTTCTTTGATGTTGGAGTGTTTATGTTTCAGCATGATGTAATGTGACGTTGACACATAGCAGCCAGGCCAGGGGCTAAACCCCAGAGTTTACACCTGTGCTGCGTGTCCCCTGGAAACGCCAGCCCATCATGGCCTCCGCCTCCTCCTATACCGTAGACCAGGGGCTCATTCCAagcgcttattttcactccttgcgtcctttcctcgctccttagctccgcccagtggaggacgtgaggaaaggatgcaaggatcagatacgaggatgggggaattgaggcaacatgaattaggca

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF00412	LIM	LIM domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR001781	Domain	Zinc finger, LIM-type	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR050453	Family	LIM/homeobox transcription factors	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24208	LIM/HOMEOBOX PROTEIN LHX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000977	Molecular Function	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0030182	Biological Process	neuron differentiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-