Gene detail

Detailed information of SKAU_T00294380 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00294380	ATP-DEPENDENT RNA HELICASE DBP3	CM056387.1	17182289	17185194	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00294380

ATGTCCTTCCTCTTTTCCCTCCCTTTCAAcaataaaccccccccctcccccacccacttCCTCATCCAAGACGTGGAGGATGTTAAGTTCGTTATCAACTACGACTACCCCAACTCCTCGGAGGACTACATCCACAGGATCGGCCGCACGGCCCGCAGCAACAACAAGGGCACGGCCTACACCTTCTTCACCCCAGGGAACCTGCGTCAGGCCCGCGAACTCATCCGGGTCCTGGAGGAGGCGCGACAGGCCATCAACCCCAAGCTGCTGCAGCTGGTGGACTCTGGgcgtggaggaggaggtggaggaggggGTGGCCGGTCTCGTTTCCGTGGCAGCGGCTCCAGCTCCAATAACCCCAACCTGATGTACCAGGACGAGTGTGACCGGCGCATGCGcacggtggggggaggggggcgggacgGCCGGGGCGGCAGCAGCGGGACCACAGGGgggggcagcagcagcagcagcagtagcttCAGCCGCgatgggagagggggaggtggaAGCCGCGACGGAGAccggtcttcctcttcctcctcctcctcctacagGGACCGGAGCGGCAGGGATAATAGAAGTGGCGGGAGCTACGGTAACGGCTCCAACTCCAGCTCCTCGTTCGGGGGTTTGGGAGAGCAGTACCAGAGctacagcggggggggggggggggcgggggcgggggcgggagcggggagcagtgGGGGCCAGTACAGCTCCAGGGGCGGGTCTCAGTCCGGGGTCGCCTCTTCCAGTGGGGGCAGCGGGGGGCAGGACCAATCCGGTCAGCAGCAGGGACAGTTTGGCAACTCGAGCAGCAGATCCAGCCAGCCACCCCCTCCGCCATCGGGACCGCAGCCCCTGATGGCTCAGCAGTTCAACCCACCTCAGCCCATGATGGGGTTCATGGGACAGGGTCCCTACCAGTttgcacccccaccccctcccccgccACCTCCACCTAGAAAGTAAACGCAGCAACCACCCCCCCAAACACAAGGACATTGAACAACACTTAGAACTGATACGCACCCATGTGTGTGTGCAACAATATGAAGTGTAGATGTAGGTGCATCAGATCAGGGGATTTGAAAGGTAAGGGCTAGTGTTTCAATAGGGAATTTGGAGTAATGGAAACTCCTGTGACCACCCTTTTCATGTACAGCTCAATAGaagtgtatatgtttgtgttaaGGGAGCTCATCTTAATGCTTCTATAACTCAACCTCTTTCCCTAATCTCAGAGGAGGGAAAGATAACAGCAGGATTGGCTGAAACCAGGAATTACTGGATCGTTAGGCAAGGATTTGGTATGGTGATTAATCACAGTAATATTGGAGTCTGTATTGGGGTGTTTAACTGGTAGGTGAGTTTCCTGTGCCGGGAAGATGATTTTCTAGAAGATGCTTGAAAGCACACTAGCATTGTTCCTGGAAGTTTGTAAGCCTTGCATAACCTGTTTTGGGTGTCCTCAATGAGAATCTAAATCAGAAACACTTTTTCCCTGTTTGGGTTATAATTATTTCCCTGAAGGAAGATAAGTGCGGCcaacgagaaagaaaaaataagtatCTTATTTTTTGGCCTACCCAATTTGAAAATGTATCTCTAATTTAGAACTATAATTTACTGAAGCCCAAATGTGAAGATTTTCAGTTgtgcatatattttatttttgctctcttcgtttacatttaaattttcttCTACAAAATCATTTTTTCTGCAGTATGGGCCTTTTGTTGGATTGATTGCTTTTAGGTATGTCCATTTCTGGTATGCTATTTGCCTTTTTGATCAGTGGAAGAGGTAGGtgctagtttttaaaaaaaattcagctTGCTCAATTGTATTTATGCGGGTTGGCTGTGATACCTGTGTAGCTAatgtttttttgtgctgtatataGATAATGCTGAATGGCTATTTGCTTACGAGAGGGTGACAATCGCACAATGTTAATATGGATTTATATTTTCCAAAGGTCATTTCCCATTGACTTGGTTTTTAAAATTGAATCCGAATTGCTGAAAGGATTAAAATATACTATGTTTTTAGAATGGCAGCGCAGAATTGAATCTGCTGTGAACAAATGGGAAATAAAGGAGAAAAAACCAACTTTAAAACCAAGGAATGCATATTTCGTGAAGTGAAGACATCTTATTTAATCTATCATGACAAATAGCGGTGACTTCCCATTTACAGCAAACGTTGGTTTTTATAGCATGAAAATTGCTGCCTTTTAGAGGAATCCACTTGGCTGTAAATATCCCGCTTGGTTTTTGATTGGTGTGAAATTTATTCCGAAGGGTAATTTGGTACACCTGGAAAGTCTGCGATGTCTCCCTCATCTTATCTGTTTAACACCTCTAAGCAGTCATAAAAGGATGCTAGCTAATATTAGATGAGCTTTGTGTAACTAAAATgtgacttcttttttttcttctcacttTTTATACTGTTTGGTTGTTTCAGGTTAAATAAAGGTTCTGAAAATTAGC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000380	Biological Process	alternative mRNA splicing, via spliceosome	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0003730	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0043021	Molecular Function	ribonucleoprotein complex binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-