| Gene ID | Annotation | Chromosome | Start | End | Strand |
|---|---|---|---|---|---|
| SKAU_T00291420 | VHS DOMAIN CONTAINING PROTEIN FAMILY | CM056387.1 | 10753565 | 10785258 | + |
| CDS | |||||
| SKAU_T00291420 | |||||
| Transcript |
| SKAU_T00291420 |
| Protein |
| SKAU_T00291420 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | UBD|Alpha-Helix|GAT |
| Ubiquitin Family | UBD|Alpha-Helix|VHS |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00270 | DEAD | DEAD/DEAH box helicase | Domain | Interproscan |
| PF00271 | Helicase_C | Helicase conserved C-terminal domain | Domain | Interproscan |
| PF00790 | VHS | VHS domain | Repeat | Interproscan |
| PF03127 | GAT | GAT domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR000629 | Conserved_site | ATP-dependent RNA helicase DEAD-box, conserved site | Interproscan |
| IPR001650 | Domain | Helicase, C-terminal domain-like | Interproscan |
| IPR002014 | Domain | VHS domain | Interproscan |
| IPR004152 | Domain | GAT domain | Interproscan |
| IPR008942 | Homologous_superfamily | ENTH/VHS | Interproscan |
| IPR011545 | Domain | DEAD/DEAH box helicase domain | Interproscan |
| IPR014001 | Domain | Helicase superfamily 1/2, ATP-binding domain | Interproscan |
| IPR014014 | Domain | RNA helicase, DEAD-box type, Q motif | Interproscan |
| IPR027417 | Homologous_superfamily | P-loop containing nucleoside triphosphate hydrolase | Interproscan |
| IPR038425 | Homologous_superfamily | GAT domain superfamily | Interproscan |
| IPR044765 | Domain | DDX47/Rrp3, DEAD-box helicase domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13856 | VHS DOMAIN CONTAINING PROTEIN FAMILY | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0003724 | Molecular Function | RNA helicase activity | Interproscan |
| GO:0005524 | Molecular Function | ATP binding | Interproscan |
| GO:0005768 | Cellular Component | endosome | Interproscan |
| GO:0007165 | Biological Process | signal transduction | Interproscan |
| GO:0016020 | Cellular Component | membrane | Interproscan |
| GO:0030276 | Molecular Function | clathrin binding | Interproscan |
| GO:0035091 | Molecular Function | phosphatidylinositol binding | Interproscan |
| GO:0043130 | Molecular Function | ubiquitin binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| - | - | - | - | - | - |
Maintained by Dr. Jiajie She in Longjun Wu's Lab & Pei-yuan Qian's Lab and supported by Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou) & The Hong Kong University of Science and Technology
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