Gene detail

Detailed information of SKAU_T00289730 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00289730	DELTEX-RELATED	CM056387.1	6139021	6146762	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00289730

ATGGAGGCAGAGGGTTGTACAGTCGATGTGAGTGGTTTACCCGGAGACATCGAAGAGGACAGATTGGCAGACAAGCTCTACATACACTTCCTGAGGGGCAGGCATGGAGGAGGGGAGATCACCTCAGTGAACATCACCAAGACAACACCTGGCTCTGCCCTCATTACCTTTGAGGACAGTAATGTGGCCCAGAGTGTGGTTCAATACGGAACACACATTTTATTGGTGGATGACAAGGAGTACAGGCTCACCGTGAGTTTTCCAAGCAAAGAAGTAGACCAGGATAAGGTTTTCACATGCATGAGGGTGACAGTGGATTATAAGTGGCTGCCCCTGGGGAAGGAGGCGATAAGTAGTCTGCAGTGTAGCTTCCCTGAGGTCCAGTGTGGCTTTGACCTGCCCGTGGGACTCTGCACGCTAAGCGGACGGTACTCTGTGCTCCAGGCCATGGTCACCCAGCTGCTGAGCCTTTTGGAAAAACCTGCCTCCTTGGGGACCTGGGGGAGCACGGCCAGGGAAAGCCCCACCTCGGGTGTGATGAGAGACCCTTCCCGTGGGTCAGCGGACCGTCCTAATAGCGATGGTGAGAGACAAAGCGAGGCCACTGCACTCTTAGGACAGGCCTCTGGCCCAGATCTGGGAGGTTTGGGTCAGGTTTCCCCTGGGATTCGTCCTAGTGATCAGACACTAGAGGGCAGTAGTGGGGCTAACAGGAGAAGGGGAGCGCAGGAAGACCCCCCGCCGGAGGATTATGATCACTCCCTGATTGTGGACATAGATACCTTCCGCTACCTTCAAAAGCACTGTGGGGAGGAGTATGAGCGCATCCTGAACCGGCATGGGGTGGAGGCTGTGGAGGTGACCACGGGAGGAGTCACCACCCTGCTCCTGCTGGCCAAGCCTGGGGAGGTGGAGGGGGTGGGAGGAGGCAGCCTGTGGCAGGCGCATAGAGACCTGAGTGATCTGTGCCAGGAGACAGAGAGCCGGCTGTGCAGGGAGCAGCTCCCCAAGGAGAGTGGGCCTCAGGAGGGCCTCCAGCAGGCCCTGGAGATCCTGCAGCTCCAGCTACCACAGTTGCTGCTGGGACAGGACAGCACGCACGTCTCCATCGTGGGCAGCAGTGGTGATGTCCTGGAAGCCAAGCTGTTCCTGCTGGACCTGCGTGCCGATGAGGTGGTGGGGCATCGCCCCAGGCTGGGCAGGACTGGCCTTGATCCCGCCTCAAATGCTTCTCGGCTGGATGCCAGTGCGGGGAAAACGCTCAGGACCTGCCGGTCTGGCAGTCCTGAAGGACGCAGGGAGTACAGGTTAGCCGCCAGATTCAGGGACACAAAGAGCAGGGACCATGGGCTAGGCACTGGGCTTGGCAACACACTGCTGACACCTAGCAATGCATTCAAGGAACATTCCTTTGCGCGTAAACATAAATCAGGGATTGATCCCATCCTAGGTAGTGGCCCAATTTTGAGCAGTGGTCAAATATCGGATAAAGGGAGGCTTGGGGTGGGAGTTGGTGGGCTAAATCTGGAAGACCAAAAAAGGTTTGACCCAACAGGGCAGGATGTTCCATTGGAGAAGTTTGATCCTCTGTCTGCTGCCTCTGAGGAGAGCAGGCCCTTCTTGAGCTCCACACCGATAGGCTCAGGGCCGCCTAATGAAAAGCTGCAGGTTGGGAGTTCCCAGAGCACTGTGCAACACATGGACCTGTTCAGAGACAGAAGGGTCCAGACAGCCGCTGTCCCCCATTCGGAATCTAGCTTCCGAACCACATTGAGACGGGCTAACAGTTTCTCTGGCTATTCCAGGAACAAACAGGATCAGAAAGTGGGTGATGCTGGTGGTTTTGGAGGGAAGCTAAGCAGAGGTAACGTAAGCACCCCAGGGATCCGCAGAGAGGGGAAGGAGGTATATAGTGTGGAGGTGCAGGCTCCTGCGGTCATGTGGGAATATATGAAGGATGCCTACCGCACTCGGCTGGAGGACATAATCTCAGGGTCGCAGATGAAGGAGAGCCAATCAGAGAGTGGTGTTACGACTGTAATCCTGAGGGGGGCAGAGCCATCCAAAGTGGATGGCTGCCAACGGGAGCTTAAGAACATGATTAACATGGTCGCCACAGATTTTTTTGTGCAGGAACTGCTGCTGGCCAGCCTGGGCGTGGCTGACCCTCGGGATGAAACTCTGGATATGTGCTGCACCGAGGTGCGGAGAAAGTTTCGGAAGGTGAAAATCCAGCAACGGAAAGAGAGTCTTGTTTTCATTGGGCCCAAACAGCTGTGCACTCAGGTGGTTGGGGCTCTGGTGGAAGTGTTCCACGGTGGGGCTGAGAGGCGGAAAGAGCAGCGGGAGAGTCCACCAGGGGTAGGGGAAACTTCAGACACCTCCCTGACCAGCAGGACCCAAAACCAAACCTTTCCACCCCAATCTGACAGCCAGGATCGAAGTAGCAGCCTTGTTCCTCCGGATGGCTCACGGAAGGAGCCAGTGACACAGAGAGGAGATGAAACCGGGCCTAGCTCCAGTGAGCACAAACAGAATGTTCAGAAGTTATCTGGAGGCAGGGGACAACAAGTGAGCCAATCAGCAGCCCAGAAAGAGCCCGTCACCGTGGAGAAGCTCGGGAAGGGCAGGCCCAAGGATGGCAAGCACGGCGGGACCAATGCAACCCTGTTTACTCACCCAACATCTGCATCCACACGGAAAGCTTCAGTAATAACCGGTACAGGGCCACTGTCCCAGTCAGCGCCTGGGAAGACTGCCCAGAACAGGACAGCATCCAAAAAAGACAGGAACCCAAAGCCCAAATCCACAAACACGCTGACCCAAATGGAGACTCTGGGCTCTCCAGTGGGATCAGAGAGTCCGGGGAGCACAGGAGGAGAAGAGCCTGCGCGCCAGACCTCCAGTATGTCCGAACACGCTCAGGAGGAGAACCAGAACCAAGGCCAGacctgtgtgtgtggggagcgAGGGAGTTCTGTTACCCGTACGCCTTGCGGGGTTGCCCTGTGCTCACAGTGCCTGTCAGCCCATGCTCAGTGCAGAGTGTGCCCTAGAGTGGAGGAGGCCTGGGGGATCCAGGGCACCATGACTTTCACAGAGTTACCCCAAAGCTTGGCTGGGCACAGCAAAGATTTGACTCTGAAGATCACCTACAGTATCCCTGATGGCATCCAAGGGGAAGGCCACCCGGCCCCTGGAGCTCCGTTTCGAGGGGGTGTGTTCCAAGCCTACCTGCCAGTTAACCTGCAGACCCGGGGGCTGCTGCCACAGCTGACGAGGGCTTTCACTGAGGGACGGACCTTCACTGtgagagcaggggatggaggggCCCGAGTCGCCTGGGGCCGTGTCCCTCACAAGACCAGGACTGACGGTGGAAAGTCTGAAAATGGATACCCAGACTCTGGGTACATCAGCCTCTTGACCGAAGAGCTGAGGATCCTGGGAGCTGAAGAAAGCACAGCTTTGGCCAAGACTCACAACAAGACCAACAACTGA

Transcript

SKAU_T00289730

GCGATCTCAAACAAACAGTAGGCTATAGTCTTTCACTTTCTGTTTCTTGAAGATGTCGACAGAAATGCGTTGTCTTCGTTTGGACGATTAAACAAAAGATGGAGGCAGAGGGTTGTACAGTCGATGTGAGTGGTTTACCCGGAGACATCGAAGAGGACAGATTGGCAGACAAGCTCTACATACACTTCCTGAGGGGCAGGCATGGAGGAGGGGAGATCACCTCAGTGAACATCACCAAGACAACACCTGGCTCTGCCCTCATTACCTTTGAGGACAGTAATGTGGCCCAGAGTGTGGTTCAATACGGAACACACATTTTATTGGTGGATGACAAGGAGTACAGGCTCACCGTGAGTTTTCCAAGCAAAGAAGTAGACCAGGATAAGGTTTTCACATGCATGAGGGTGACAGTGGATTATAAGTGGCTGCCCCTGGGGAAGGAGGCGATAAGTAGTCTGCAGTGTAGCTTCCCTGAGGTCCAGTGTGGCTTTGACCTGCCCGTGGGACTCTGCACGCTAAGCGGACGGTACTCTGTGCTCCAGGCCATGGTCACCCAGCTGCTGAGCCTTTTGGAAAAACCTGCCTCCTTGGGGACCTGGGGGAGCACGGCCAGGGAAAGCCCCACCTCGGGTGTGATGAGAGACCCTTCCCGTGGGTCAGCGGACCGTCCTAATAGCGATGGTGAGAGACAAAGCGAGGCCACTGCACTCTTAGGACAGGCCTCTGGCCCAGATCTGGGAGGTTTGGGTCAGGTTTCCCCTGGGATTCGTCCTAGTGATCAGACACTAGAGGGCAGTAGTGGGGCTAACAGGAGAAGGGGAGCGCAGGAAGACCCCCCGCCGGAGGATTATGATCACTCCCTGATTGTGGACATAGATACCTTCCGCTACCTTCAAAAGCACTGTGGGGAGGAGTATGAGCGCATCCTGAACCGGCATGGGGTGGAGGCTGTGGAGGTGACCACGGGAGGAGTCACCACCCTGCTCCTGCTGGCCAAGCCTGGGGAGGTGGAGGGGGTGGGAGGAGGCAGCCTGTGGCAGGCGCATAGAGACCTGAGTGATCTGTGCCAGGAGACAGAGAGCCGGCTGTGCAGGGAGCAGCTCCCCAAGGAGAGTGGGCCTCAGGAGGGCCTCCAGCAGGCCCTGGAGATCCTGCAGCTCCAGCTACCACAGTTGCTGCTGGGACAGGACAGCACGCACGTCTCCATCGTGGGCAGCAGTGGTGATGTCCTGGAAGCCAAGCTGTTCCTGCTGGACCTGCGTGCCGATGAGGTGGTGGGGCATCGCCCCAGGCTGGGCAGGACTGGCCTTGATCCCGCCTCAAATGCTTCTCGGCTGGATGCCAGTGCGGGGAAAACGCTCAGGACCTGCCGGTCTGGCAGTCCTGAAGGACGCAGGGAGTACAGGTTAGCCGCCAGATTCAGGGACACAAAGAGCAGGGACCATGGGCTAGGCACTGGGCTTGGCAACACACTGCTGACACCTAGCAATGCATTCAAGGAACATTCCTTTGCGCGTAAACATAAATCAGGGATTGATCCCATCCTAGGTAGTGGCCCAATTTTGAGCAGTGGTCAAATATCGGATAAAGGGAGGCTTGGGGTGGGAGTTGGTGGGCTAAATCTGGAAGACCAAAAAAGGTTTGACCCAACAGGGCAGGATGTTCCATTGGAGAAGTTTGATCCTCTGTCTGCTGCCTCTGAGGAGAGCAGGCCCTTCTTGAGCTCCACACCGATAGGCTCAGGGCCGCCTAATGAAAAGCTGCAGGTTGGGAGTTCCCAGAGCACTGTGCAACACATGGACCTGTTCAGAGACAGAAGGGTCCAGACAGCCGCTGTCCCCCATTCGGAATCTAGCTTCCGAACCACATTGAGACGGGCTAACAGTTTCTCTGGCTATTCCAGGAACAAACAGGATCAGAAAGTGGGTGATGCTGGTGGTTTTGGAGGGAAGCTAAGCAGAGGTAACGTAAGCACCCCAGGGATCCGCAGAGAGGGGAAGGAGGTATATAGTGTGGAGGTGCAGGCTCCTGCGGTCATGTGGGAATATATGAAGGATGCCTACCGCACTCGGCTGGAGGACATAATCTCAGGGTCGCAGATGAAGGAGAGCCAATCAGAGAGTGGTGTTACGACTGTAATCCTGAGGGGGGCAGAGCCATCCAAAGTGGATGGCTGCCAACGGGAGCTTAAGAACATGATTAACATGGTCGCCACAGATTTTTTTGTGCAGGAACTGCTGCTGGCCAGCCTGGGCGTGGCTGACCCTCGGGATGAAACTCTGGATATGTGCTGCACCGAGGTGCGGAGAAAGTTTCGGAAGGTGAAAATCCAGCAACGGAAAGAGAGTCTTGTTTTCATTGGGCCCAAACAGCTGTGCACTCAGGTGGTTGGGGCTCTGGTGGAAGTGTTCCACGGTGGGGCTGAGAGGCGGAAAGAGCAGCGGGAGAGTCCACCAGGGGTAGGGGAAACTTCAGACACCTCCCTGACCAGCAGGACCCAAAACCAAACCTTTCCACCCCAATCTGACAGCCAGGATCGAAGTAGCAGCCTTGTTCCTCCGGATGGCTCACGGAAGGAGCCAGTGACACAGAGAGGAGATGAAACCGGGCCTAGCTCCAGTGAGCACAAACAGAATGTTCAGAAGTTATCTGGAGGCAGGGGACAACAAGTGAGCCAATCAGCAGCCCAGAAAGAGCCCGTCACCGTGGAGAAGCTCGGGAAGGGCAGGCCCAAGGATGGCAAGCACGGCGGGACCAATGCAACCCTGTTTACTCACCCAACATCTGCATCCACACGGAAAGCTTCAGTAATAACCGGTACAGGGCCACTGTCCCAGTCAGCGCCTGGGAAGACTGCCCAGAACAGGACAGCATCCAAAAAAGACAGGAACCCAAAGCCCAAATCCACAAACACGCTGACCCAAATGGAGACTCTGGGCTCTCCAGTGGGATCAGAGAGTCCGGGGAGCACAGGAGGAGAAGAGCCTGCGCGCCAGACCTCCAGTATGTCCGAACACGCTCAGGAGGAGAACCAGAACCAAGGCCAGacctgtgtgtgtggggagcgAGGGAGTTCTGTTACCCGTACGCCTTGCGGGGTTGCCCTGTGCTCACAGTGCCTGTCAGCCCATGCTCAGTGCAGAGTGTGCCCTAGAGTGGAGGAGGCCTGGGGGATCCAGGGCACCATGACTTTCACAGAGTTACCCCAAAGCTTGGCTGGGCACAGCAAAGATTTGACTCTGAAGATCACCTACAGTATCCCTGATGGCATCCAAGGGGAAGGCCACCCGGCCCCTGGAGCTCCGTTTCGAGGGGGTGTGTTCCAAGCCTACCTGCCAGTTAACCTGCAGACCCGGGGGCTGCTGCCACAGCTGACGAGGGCTTTCACTGAGGGACGGACCTTCACTGtgagagcaggggatggaggggCCCGAGTCGCCTGGGGCCGTGTCCCTCACAAGACCAGGACTGACGGTGGAAAGTCTGAAAATGGATACCCAGACTCTGGGTACATCAGCCTCTTGACCGAAGAGCTGAGGATCCTGGGAGCTGAAGAAAGCACAGCTTTGGCCAAGACTCACAACAAGACCAACAACTGACCATGATCAGATATGCACTGTATTTGGGTTACAATGAGCAGAAGTGTATTTTTCAGAATAATATTGTGTACACTTGAAAAAAAACGTCTTTTTTGTATATGTGATGCATTTTCTAGTTACAAAACTTGGCAATGAAAGGAAGAATGTATAATGCCGTCCTGTTTGACTTTGAGAGCTTTATTGAAAACAGATGGTGGGTTGGGGTATTTAGTGGGATGATGCAATAGGTTATGACCTGTTGAGGATTTGTCATTAACTGTGGCATTAAAGTAAGTCAAAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07292	NID	Nmi/IFP 35 domain (NID)	Domain	Interproscan
PF18102	DTC	Deltex C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR009909	Domain	Nmi/IFP 35 domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR039396	Domain	Deltex, C-terminal	Interproscan
IPR039398	Family	Deltex family	Interproscan
IPR039399	Homologous_superfamily	Deltex, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12622	DELTEX-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005654	Cellular Component	nucleoplasm	Interproscan
GO:0007219	Biological Process	Notch signaling pathway	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-