Gene detail

Detailed information of SKAU_T00287420 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00287420	RING FINGER PROTEIN 25	CM056386.1	44883391	44903504	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00287420

ATGGCAGGAAAAGACTACAaccacctcttcaaactgctcATCATTGGCGACTCAAatgTGGGGAAAAGCAGTCTGCTGCTTCGATTTGCTGACAATTCTTTTTCAGGCAGCTACATCACAACAATCGGAGTGGACTTTAAGATCCGCACAGTGGATATTGAGGGGGAGAGAGTCAAGCTGCAAATCTGGGACACTGCAGGACAAGAGAGATTCAGAACCATCACCTCCACgtaTTACAGGAACACCCACGGTGTAATCATTGTATATGATGTCACAAATCAAGAATCATTCATTAATGTCAAGAGATGGCTGAATGAAATTTCTCAGAACTGCGACAACGTGTGTAAGATTCTAGTTGGCAACAAGAACGATGACCCCTCAAAAAAGCAGGTGGACTCCCAGGATGCTCAGCGGTTTGGGGAATCGGTGGGCGTCAGAGTCTTTGAAACAAGTGCCAAGGAAAACATTAATGTGGAAGAGATGTTCATGTCCTTCACTCACATGGTCCTGCGGGCAAAGAAAACGAACTCATCTCATGATGAGATCGAGACGAATGCTGACAGCCTGACCGCCGTGCTCCCCGGCGAGGAGAGAACGGATAGAATGAAGATGGCTGCGGAAAGCGATGTGCTGTGTGAGATTGAAGTGCTCCAGTCCATCTATCTTGAAGAACTGAGGGTCAGTCCTAAAAGTGACAGGGACTGGGACGTGAGTGTGGATCTGTACCCCTCCACAGCCGAGGACTGTCTCTCCCAGTTTGTCCGACTCACGCTCACTTTAACCCTCGACTCGCAGTACCCTTCATCTCCTCCCACCATCTCTATTCACAATCCTCGGGGCCTTTCCGATGACAAGCTGCTCAGTGTCCAGCAGTGCCTGGAGGCTGAAGCTCAAGCCTGCCTTGGGACCCCTGTTCTCTACCAGCTCATTGAGAAAGCCAAAGAAATCCTGACGGAGAGCAATATTCCTCATGGGAACTGCGTCATTTGCCTGTATGGCTTCAAGgatgGCGAAGCATTCACAAAAACAAGCTGCTATCACTACTTCCACTCCCACTGCTTGGGCCGCTACATCACTCACTCCGAGAGCgagctgagagagagggagaaagagctgGAGGAGGACAAGAGCAGGGGGAGAATGGAGGGAGAGGAACTGTCTGTGGTCTGTCCAGTTTGTCGAGAACCACTGACCTATGACCTGGAAATTCTTCTAAACTCTCCCGCGCCTCAATTTCCCAAGGCAGAGGGAACAATCCTAGGGACAGAGTTTCAAAAGAAGTGGGCCGAACTTCAAAGTATTTTGGAGCGGCAAAGGGAAAAGGGCGGAGTTATAGACCCTGAGGTGGAGTCTAACCGTTTCCTCATACATATTAATGAGGCAACTGCTGATGCCAGCAGCATTGGTCCTGACCCAGATTCTCCTCTCAACCCATCACTTCCTTCCACGGTCCCTCTCTCCACCAATCGCGTCACAGCATCTCAGGGTCCACAGCTGTCTGGCCACTCGCAGTGCAGGACTGGATCTGGCAACAGGAGACGAGGCCAGTGGAAGTGGAGCAGGAGGCGCGAGACCCAGCGGGAATACAGGGAGAAGCCCAGCAGCCTTACTGAGGAGGGTGTGGCTAAACTCACCCTCTCTTCGGGGAACAGGTTCGAGCTCAAGGGGGGCGCAGCTGTCACACACGACGACCAACTTGAAGTCAGGGTAAACGACAATCACCAAGACCTCATGGTGCGGCCAAACCAGTCAGAGAAAACAGAGGCGGAGGAGTGTGTGAATATCGGCCAATCGGAAGCCGTAGCTTGCGACGGACATGAACAGACAATGAACCAATCATACCCGGATAATTGTAAATCTAACAACCAGTCTGATTCTGCCGTGCCTGGGAGAGGGCGGGGTCAGAGGTACAGTCAATGGGGGAGAGGTAGGAGGAGGGGCTCAGGTCAACAGCCTAGACATTTTGAGGAGAGGAATATCCATAGTCTGGACCAATCGGATACTCCGAGGGATAGTGTGCATCACAGAGGTGGCCGAGGGTTTGGCTATAGGGGACGAAGAGGAGGTGATCACAATGCTCACTTTAGAGGAGGCGGGGctaacaggaagaatgggagaggTTTCACTCGGCGAGAGGTGGAGAAGGAAGTAGCAACAGATGGAGGGCTTTGA

Transcript

SKAU_T00287420

ATTTTTCCGTAGCACTGATTACGAAAGGCTGTGTAGCTGCCATTTAGAATGGAAGAAACAAGACGCGTTACAAACTTGGattaactttagctagctaagtGGATTTATTGAAATCTGTCAAATGACTAAACGCTGCTAGCAAGCAGAAGTATTGTTCTTGTTTGTACGGATAAGAGTCAATGCCAGCTGCAGCAGGGGAAGAGGAACAGGGAGTGGAGGGAGGGATCAGGAGAGAGCGACGCACATGATTAGCTATTACCCAAACCAAGTGACTCGGTTTTCAGGTGTGGCCTAAGGCGGCGGTCCCGCACCCTCCGGCAGCCCAAAAGACCACCAACTTTCCTGATCAACTTCCCTGGGAGACGCCTGGACCCGGTCAAGCGATGCTATATATTTGAGACATGCTGTCAAAGTTTTCTATTTAAATTACCGTTTTATTGATCACACCGCAGTAGGTCGTTTAAAAAGCACTGTTTCAGAAACGTGGCAAGTAACGTTACGCGAAATAGATAAAGAAAACAATTGTTAgctagttggctaacgttagattGCTAGCTATATATGAACTATCATTAGCTGAAGCTAGCTAACTTTGCCATCCTTGTTGAAAGCTATCGACAGACAGACGGATTGCTGCTTGGTAGCTAGTTAAAAGTTAACCAAGCTATCAGAACTTCGCAAAACCAAAGTGAATCTTACTTCATGGTTAGGGGTCAAATGAGGGAACCACATGGAGAGAGGGTATGGATGACCAAAGTGAGGGACTGATAGACTAAGGCGTGAGCGAGAAAAGTCAATGCCAAGTGTATACACAGAGAAGATAACATCAGATATCAGATTGAGAGGTTGCtcaaattaaagtaaaaaaaaaaaacaagatcttgGACAACAGACTTCGAGATCAGTGTTCAGTTCAGGAGTGAACCAAAAATATTTCACAATTATTCTGTGTTTATGCTTTCCGTTCTCACCTATCTGTGCGGAAAGGTAGATATTATGCACATGTCACAGTCGGTAAGATTACAGTGTGCTAACGATTTGGGCGAGAACAATCAAAACGCCTGTTGTTGATGGGATTCACATCCTACGTGTACCTTAAAATATTTAAGCATGTATATTTCCACACTTAAATGCACTTGAATGTTCAGGATCTTTTTCTCAAGTGTGCTGCCAGTTAAATAATAGCGCTAAATTGCCCTTGGCATTTAATTAGCAGAAAACGGACACTAGGTAGATTGGTTGGAAAGTCATTTTAGGAAGATGATactaatgcaaaataaactggtGGAAATGCAATTGGAACAAAGGTGAACTGTCTGAATCACACCTTGCTGGGATTTCTGTGCTGGAGTTCGTGGAACCAAACTTCACTGAACATACTGTAGAATAGAAAGTGAAACTTAATGACAAGGATACACAAAATCAGCAACTGAGACCGTACAGGAAGATAAACACGTGAACAAAGGTTAAACATGAATTAGGTGGAGATAAATTGTGAGGAACACAGCATATTGGCTGAACATTGGACATGCCACAATCTCCTGGACTGAGGGGGAAATGAAATATCCCATCACACTGAACTGGGAATTAATCCTTCTAAACTGGAAATAAAGGACCACAATAACCTGGGAGAGCCGAGCCCTGGAATTGCCTGCTGTGATTAAACAGGTTTTGACTGGAATACATAAGGAAATGGCAGGAAAAGACTACAaccacctcttcaaactgctcATCATTGGCGACTCAAatgTGGGGAAAAGCAGTCTGCTGCTTCGATTTGCTGACAATTCTTTTTCAGGCAGCTACATCACAACAATCGGAGTGGACTTTAAGATCCGCACAGTGGATATTGAGGGGGAGAGAGTCAAGCTGCAAATCTGGGACACTGCAGGACAAGAGAGATTCAGAACCATCACCTCCACgtaTTACAGGAACACCCACGGTGTAATCATTGTATATGATGTCACAAATCAAGAATCATTCATTAATGTCAAGAGATGGCTGAATGAAATTTCTCAGAACTGCGACAACGTGTGTAAGATTCTAGTTGGCAACAAGAACGATGACCCCTCAAAAAAGCAGGTGGACTCCCAGGATGCTCAGCGGTTTGGGGAATCGGTGGGCGTCAGAGTCTTTGAAACAAGTGCCAAGGAAAACATTAATGTGGAAGAGATGTTCATGTCCTTCACTCACATGGTCCTGCGGGCAAAGAAAACGAACTCATCTCATGATGAGATCGAGACGAATGCTGACAGCCTGACCGCCGTGCTCCCCGGCGAGGAGAGAACGGATAGAATGAAGATGGCTGCGGAAAGCGATGTGCTGTGTGAGATTGAAGTGCTCCAGTCCATCTATCTTGAAGAACTGAGGGTCAGTCCTAAAAGTGACAGGGACTGGGACGTGAGTGTGGATCTGTACCCCTCCACAGCCGAGGACTGTCTCTCCCAGTTTGTCCGACTCACGCTCACTTTAACCCTCGACTCGCAGTACCCTTCATCTCCTCCCACCATCTCTATTCACAATCCTCGGGGCCTTTCCGATGACAAGCTGCTCAGTGTCCAGCAGTGCCTGGAGGCTGAAGCTCAAGCCTGCCTTGGGACCCCTGTTCTCTACCAGCTCATTGAGAAAGCCAAAGAAATCCTGACGGAGAGCAATATTCCTCATGGGAACTGCGTCATTTGCCTGTATGGCTTCAAGgatgGCGAAGCATTCACAAAAACAAGCTGCTATCACTACTTCCACTCCCACTGCTTGGGCCGCTACATCACTCACTCCGAGAGCgagctgagagagagggagaaagagctgGAGGAGGACAAGAGCAGGGGGAGAATGGAGGGAGAGGAACTGTCTGTGGTCTGTCCAGTTTGTCGAGAACCACTGACCTATGACCTGGAAATTCTTCTAAACTCTCCCGCGCCTCAATTTCCCAAGGCAGAGGGAACAATCCTAGGGACAGAGTTTCAAAAGAAGTGGGCCGAACTTCAAAGTATTTTGGAGCGGCAAAGGGAAAAGGGCGGAGTTATAGACCCTGAGGTGGAGTCTAACCGTTTCCTCATACATATTAATGAGGCAACTGCTGATGCCAGCAGCATTGGTCCTGACCCAGATTCTCCTCTCAACCCATCACTTCCTTCCACGGTCCCTCTCTCCACCAATCGCGTCACAGCATCTCAGGGTCCACAGCTGTCTGGCCACTCGCAGTGCAGGACTGGATCTGGCAACAGGAGACGAGGCCAGTGGAAGTGGAGCAGGAGGCGCGAGACCCAGCGGGAATACAGGGAGAAGCCCAGCAGCCTTACTGAGGAGGGTGTGGCTAAACTCACCCTCTCTTCGGGGAACAGGTTCGAGCTCAAGGGGGGCGCAGCTGTCACACACGACGACCAACTTGAAGTCAGGGTAAACGACAATCACCAAGACCTCATGGTGCGGCCAAACCAGTCAGAGAAAACAGAGGCGGAGGAGTGTGTGAATATCGGCCAATCGGAAGCCGTAGCTTGCGACGGACATGAACAGACAATGAACCAATCATACCCGGATAATTGTAAATCTAACAACCAGTCTGATTCTGCCGTGCCTGGGAGAGGGCGGGGTCAGAGGTACAGTCAATGGGGGAGAGGTAGGAGGAGGGGCTCAGGTCAACAGCCTAGACATTTTGAGGAGAGGAATATCCATAGTCTGGACCAATCGGATACTCCGAGGGATAGTGTGCATCACAGAGGTGGCCGAGGGTTTGGCTATAGGGGACGAAGAGGAGGTGATCACAATGCTCACTTTAGAGGAGGCGGGGctaacaggaagaatgggagaggTTTCACTCGGCGAGAGGTGGAGAAGGAAGTAGCAACAGATGGAGGGCTTTGAAGCGTAAGAGGGGAGGATCATTACAGAAAATGAATGAAGGATGTACCTCTATTAAAATCCACCAAAAATAAACTTCACTCTGCATTTCACTGTCCAGCCTTATTTTGCATGTGTACTTTTGCCACTAACACTGATGACACCCAAGATGACTATATAAATTTATAATTCATATTAATATATTTTTGTTTCTCCTGCTGTGTTTTCAGTAGAGTGCTTATGCTCATTGCTGCAATGaccacatacagtgcactccaaaagtgttaggatagtgacaatttttgttgttttggctctgtactccagcacattggatttgaaatggaacagtgactatgaggttaaagtgcagacgttcagctttaatttgagggtttttacatccatatcgggtgaaccgtgtagcattttaggggacaaaaagcaATTGGAtatattaacataaacttaaacaaagtcatgatatttaatatttggttgcatatcctttggcacagcatgacttcctgatgactgtgacccaaaaacatcaaaagactcttgatatcttattttcaggatttctatgggaattggagggtgggactagattaagctgtaaattacacgggaacggtatggaacacatggttggctaaatggctgtaaatcatcaagggtctgaggtataaaacgagcctcaaaccatcactctgctgccagatatgcagtataaatagatggatcactttaagggttgtttctctggtctcattttcctattgaactctatggaaaagtaagtcaggagaaacaacccttcaagtgatattattactttatttaagttcatgtttatttgtccaattacttttggtgccctaaaatggggcggactgtaaaaatggttacaattgctacatggttcacccgatatggatgtaaaaatcctc

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	E3\|E3 activity RING\|RING

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan
PF05773	RWD	RWD domain	Domain	Interproscan
PF17123	zf-RING_11	RING-like zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806	Family	Small GTPase	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR006575	Domain	RWD domain	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR016135	Homologous_superfamily	Ubiquitin-conjugating enzyme/RWD-like	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR039133	Family	E3 ubiquitin-protein ligase RNF25	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13198	RING FINGER PROTEIN 25	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0051092	Biological Process	positive regulation of NF-kappaB transcription factor activity	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-