Gene detail

Detailed information of SKAU_T00281240 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00281240	PROTEIN CBG26694	CM056386.1	18907866	18912656	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00281240

atgaccccATTCTcatcagatggtcggctgggcaaagccagtgggttgtacctccactgttggctggacgggcaggcctgccgagccctggtggacacaggggctaccatctcccttgtctggccaggagtactccacaacaccggcgggccccaacttcccggggcgtggacgcccaccaccacaccgctgacatcagtgacgagggcaaagatggcgatgagggggaagaaagaggtgacGGTGAGCGGGCAGGAGGTGTtgcacgagttctggctagctgacatcgcggactcgtgcatcatcggcctggacctgctgaacCACTGGGGAGCCTGTgttgatgtgtcaagggccaGCATCACCCTTGGCGCGGAGACTGTAGCCCTCCAGTCCGtgccccagcccgaccactcgctcgcccaccaccaccagcctgccacacagcaaccgcctgcccagcccaaaccagctctgcctgccgagacgacagcagctgtccacgccctgtggcaacgaagcagcagcgggctcgaccaccagcagctcaaaagcctcctggatgGAAACGCAGACCTGTTCGCGGTGtgggatgaggactgtacccagaccgagctggtgcagcacaccatcaacaccgacacagctcaacccatccgtctgcggccgcaccggatgtcccctgccaagcgactggtggcagaggaaaaggtgaaggaaatggcagctgctgacgacctcctggtacacgccagcgacttccagcaggccctcgctaacctgactgatgtgctagctgcaatccgccaggcggggttgaggctaaacccaaagaagtgccagcttctccggagggagacggccttcctagggcacatcgtcagcgagcggggcgtagccaccgatccatctaaggtggctgaTGTGAGGGACTGGCCAGTCCCTGGCgacgtgggtgagctgcgaagcttcctgggcctagcgtcttactatcggcgctttgtccgggacttcgctaccctggctagccccctccatcgcttaacggataagtgccggccgtttgtgtggcaggaggggcaatccatggcctttgaccagctcagggcggccctcactgaagctccggtgTTGGCATACCCCGACGCCCAGCGACCCTTCATCATCGACACGgacgcaagcaacaccggagtgggggccgtcctgtcacagaaggacgaagacggcgagcgagtggtggcctactacagccgggccctagggaaggcggaacgcaactattgcgtcaccaggcgggagcttctcgctgtggtcagggcgttgcaccacttccggccgtacctgcacggcagccacttcctcctgcgcaccaaccacgcctcgctcacctggctccttaattttaaagaccctgaggggcaagttgctcgctggctagaacaactgcaaggctatgacttcgaaatccggcaccgggcaggccgacttcatgggaacgcagacgcCTTGTCAcgccggccgtgcgcagcccaggagtgtcgctactgtagccaccaagaggaacgggaccaggtgagcccagatgtggcggtggtccaggccagcggcaacgcggaggaagtggctgccgctgacgcccatggagctgCGAGAGGCCGACAGCATGCTGGGCAAGagagcccagagcttAAAAGCTATTACAGCCTGTACAGCAACTTGGTGCAGCGGAACGGTCTCCTCTACCGACGGTGGCAGGCtccaggccggggcagcgacatcctgcagctgttagTGCCACAGGCGCTCCaccctgatgtcctcagTGGCCGGAGGCGTTCGCTGtaccagaccagagtgcggcgacgatGGCGGAAAGGCTCGTGGAGGAAATGTTCACCCCGTTTCGGGtcccctgccgagctccacagtgaccagggtTGCAACTTCGAGTCCCAGGTGCTGGCTgaggtctgcaaacggctgggcgtgacaaagacccgaacgacgccactccatccccaaagcgacggcctcgtcgagcgatttaatcgcacgctagctacccagctagccatcttagccagccagcaccagcgggactgggatcgccacctgcccttggtcctgtgggcttacaggtcagccgtgcaggagtccagccaactcacccctgctgccctgatgttcggacgggagcttaggacaccagtggacttggtgttcggggccCCGCCCGAGCCTGAAGAACCaagccgtactcgggaggagtactacaACCGGCTGCGGGACCGCCTCCTCGTCactcacgacttcgcccgcaaggcccaggtggtttatcgcatcaggatgccaggccgggggcgcctggtggtgctacatcaagaccggctagcgccctacaggcccctggcaactcctgatgcagctgagccggaggtgagcagcgactctgcgttacccagtgagcctgagcccagcgacactccgctgagtgctaccaggagacctaaacgacaccgaCGGCCCCCAGGCCACTTCTGGGACTTTGACgtgagttgtgggtggactgcggggtcgtcagagacttgtgaccccttgggtgggggcaatgtggcggcctgggggttatcaactggccagctaggaccgagGTACCGCTACCCGGTCGCTATGTAA

Transcript

SKAU_T00281240

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17917	RT_RNaseH	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001584	Domain	Integrase, catalytic core	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR036397	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR041373	Domain	Reverse transcriptase, RNase H-like domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984	PROTEIN CBG26694	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0015074	Biological Process	DNA integration	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-