Gene detail

Detailed information of SKAU_T00279990 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00279990	EUKARYOTIC TRANSLATION INITIATION FACTOR 2C	CM056386.1	12344314	12376478	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00279990

CACTTGTATTTTCTTACCCTTTAACAATTTCCTCATGGGGAAATGGCTTTGAGAAGTGCACAAATTAATTGAATTTGTATTTACTGCTGAATAAACTCAGAAAAACGTCAACGCGAGTATTGGCAATCCAGTGAATGTTTCATGTGGAATGCAGACCGATCATTCATTCAATTAAGAGCAGTTAAGTTACCAGCCATTAGTGCACTCAGTTGAAACAGTGACGCAAAATACACATAATCAATGTCTGACGTAGGCTACATCTGGTACTTTCGGGAGCAACTGGAAAATAAGCGGGCGCATTCTGCCTCGTTCAAATGAATGTCAGTGCTCGACGTGAGTAACATTGCATACGCAAACTTTTTGATAACAGTCAACAAGCACAGAATACGTTGTGGTAGAACAGAGGGAAAACTACCGACCCTTTTCCTCCGAAATGAGCGATAGAGGAAGAGCTAGAACAAGCTCACGCTCGAGGGGGAGAGCTCGCGGGCCTAAGACGGCTCCAGGCATGcCACCAGCTCAGGAGACTTCGCGGCCAGCTCGCCCTCCCGCTGAGAGTGAGATGTTGGGCCGTGGAAGACAGAAAACTGCGCCTTCGGCCGCTACATCAGAAGGCCTTCTTGAGATCTCTGCTGGCTTCCAGAAAGTGACTATTGGAGAAAGAGGTGGTCGGCGACGGGATTTGCACGATGAAGGAGTCCACACAAGACAGGCTATAGAACATGTAAAAGAATCCAAATCAGGTACTTCTGGATCTCCGATTGAGCTGAGGACGAACTACTTCCGCATCCTGTCGCGACCTCAGTGGGTGCTCTTCCAGTATCACGTTGACTTCAACCCCCCGATGGAGTCCCGCCGCCTTCGGTCTGCTCTTCTCTTTCAGCACGGCGAGATGCTGGGCCCCGCCCACACCTTTGACGGTGCCGTCCTCTTCCTGCCCCACAGACTCCATAACCTGGAGACCATTCTATTTGGTGAAACCAGGCAAGGAGAGAAGGTCCGAATCACAGTGACGCTGACCTGTGAGCTTCCTCCTAATTCCCCAGTCTGTCTGCAGTTCTACAACATAATCTTCAGAAGAGTCCTGAGGATTCTGAACATGCAGCAGATCGGTCGCCATTACTACAACCCCAACGAACCTCTTGACATCCCCCAGCACAGGCTGACGATCTGGTCCGGCTTCTGCACAGCCATCCTGCAGTATGAGTCCGGCGTCATGCTGTGCGTGGACATCAGCCACAAGGTGTTGCGCAGCGAGACAGTGCTGGCCTTCATGTACGGCCTGAGGCAGCAACATGGTGACCGCTACTTCATGGAAGCCTGCACCAAAGAGCTGGTCGGCCTCATCGTCCTCACCAAGTACAACAACAAGACGTACAGGATAGATGAAATTGCCTGGGACCACAACCCGAGAAACACATTCAAGAAGGGGGACCGAGAGATCTCTTTTAAAGAGTACTACAAGACGCAATACAGCCTGGATATCAGGGATGACAACCAGGTGCTTCTGGTCAGCCATGTGAAGAAGCGGGGACCTTCCGGAGCTCCGCCTCCTGGGCCGGCCATGTTGGTCCCCGAGTTCTGCTACCTGACAGGTCTGACAGACAGGATGCGGCTCGACTTCAGCATAATGAGGGATCTATCTCACCACACACGACTAAACCCGCAAGAGCGAGATAACCGCCTCAACCGATTCATCAGTACCATCAACGGGAACCCAGAAGCTCAGGCTGAGCTCAACACTTGGGGTCTCAGCTTTGACAAGCAGTCCCTGAGAATTCAGGGCCGAATCCTCCCAACTGAAAACATCCTCCAGGGTCGCAGGACTTTCCAGTACAGGCCCATGGCAGCTGATTGGACAAAGGAGATGCGTGGGGTGCCCCTCACCAGCTCCAAGCCCCTGGAGCACTGGATGCTCTTCTTCACCCGCCGTAACGGGGACCTCGCCCAGTTCCTCCTTCAAACCCTTAATCGGGTGTGCCAGCCAATGGAAATGAAGATGCTGAGGCCCGCCATGTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02170	PAZ	PAZ domain	Domain	Interproscan
PF05831	GAGE	GAGE protein	Family	Interproscan
PF08699	ArgoL1	Argonaute linker 1 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003100	Domain	PAZ domain	Interproscan
IPR012337	Homologous_superfamily	Ribonuclease H-like superfamily	Interproscan
IPR014811	Domain	Argonaute, linker 1 domain	Interproscan
IPR031320	Domain	GAGE	Interproscan
IPR036085	Homologous_superfamily	PAZ domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22891	EUKARYOTIC TRANSLATION INITIATION FACTOR 2C	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0004521	Molecular Function	RNA endonuclease activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0031047	Biological Process	regulatory ncRNA-mediated gene silencing	Interproscan
GO:0034584	Molecular Function	piRNA binding	Interproscan
GO:0043186	Cellular Component	P granule	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-