Detailed information of SKAU_T00267910 in Synaphobranchus kaupii Gene info
Gene IDAnnotationChromosomeStartEndStrand
SKAU_T00267910COILED-COIL ALPHA-HELICAL ROD PROTEIN 1CM056385.12417328724222128+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
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Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00060Lig_chanLigand-gated ion channelFamilyInterproscan
PF00497SBP_bac_3Bacterial extracellular solute-binding proteins, family 3DomainInterproscan
PF01094ANF_receptorReceptor family ligand binding regionFamilyInterproscan
PF07111HCRAlpha helical coiled-coil rod protein (HCR)Coiled-coilInterproscan
PF10613Lig_chan-Glu_bdLigated ion channel L-glutamate- and glycine-binding siteDomainInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR001320DomainIonotropic glutamate receptor, C-terminalInterproscan
IPR001508FamilyIonotropic glutamate receptor, metazoaInterproscan
IPR001638DomainSolute-binding protein family 3/N-terminal domain of MltFInterproscan
IPR001828DomainReceptor, ligand binding regionInterproscan
IPR009800FamilyCoiled-coil alpha-helical rod protein 1Interproscan
IPR019594DomainIonotropic glutamate receptor, L-glutamate and glycine-binding domainInterproscan
IPR028082Homologous_superfamilyPeriplasmic binding protein-like IInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR46822COILED-COIL ALPHA-HELICAL ROD PROTEIN 1Interproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0005216Molecular Functionmonoatomic ion channel activityInterproscan
GO:0005814Cellular ComponentcentrioleInterproscan
GO:0006611Biological Processprotein export from nucleusInterproscan
GO:0006811Biological Processmonoatomic ion transportInterproscan
GO:0015276Molecular Functionligand-gated monoatomic ion channel activityInterproscan
GO:0016020Cellular ComponentmembraneInterproscan
GO:0030154Biological Processcell differentiationInterproscan
GO:0038023Molecular Functionsignaling receptor activityInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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