Gene detail

Detailed information of SKAU_T00264170 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00264170	PANNEXIN	CM056385.1	12495065	12519415	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00264170

ATGCAGTATCCAGAAAGAATGGGAAAAAGGGCTCTGTATCCAGATGGGACATCTGCAAAGCTGAAGCTGGATGACGCTGTCCCCCCAGGAGGAAACCACACCTATACCTGGACTGTCAAGCCTGAATTTGCCCCGACTGAGGGGGATGCTAACTGCCTGACCTGGGCATACCACTCACATGTTGATTCCCCACGAGACATCTCTTCTGGCCTTATTGGGGCCATCCTTACCTGCAagaaagGCACCCTGCTGCAGGCGCCCAGCAATCAGGCCATGCTAAAGCGGACAGATGTGGACAAGGACTTTGTCATCTTGTTCACTGTAATAGATGAGAACCTCAGCTGGTACTTAGAGGAGAACATCCAGGCCTTCTGCTCTGATCCCACAGGCGTGGACCCTGATGATGAGGACTTCCAGGAATCCAACAAAATGCATGCCATAAATGGGTACCTGTACGGGAACCTGCCAGACGTGGAGATGTGCCTGAACCAGACAGTGGCCTGGCACCTCTTTGGAATGGGCAATGAGGTGGACATCCACTCTGCCTCCTTCCAGGGGCACACACTGCTTAACCAGGGTCACCGTACTGATGTCCTCAGCCTGTTCCCGGCAACTTTCATTACCGCAGACATGGTCGCCTTCACCCCAGGGAAATGGATGATGGGCTGCCAGGTCAATGACCACGTACAAGCTGGAATGCAAGCCTTTTACCAGGTTTTGGACTGTGGGGAAAAAGAGAATGGTACTGAAGCGCCTCCTGGTGGCAGAATAAGGCGCTACTACATAGCTGCTGAGGAGCAGTTGTGGAATTATGCCCCATTAGGAATTGACACTTCAAATAATCTCCCCTTGGTTGATGCTGGCAGTCTGTCAGCGCTTTTCTTTGGAAGGCAACGGGGTCGGTTGGGAGGGGTGTATAAGAAGGTTCGTTATGTGGCCTACACCAATGAAAGTTTCACCACCAAGGTGGAGCAGAGTGCTGCAGAAAGACACCTTGGAATTCTAGGCCCAGTGATCCGAGCTGAAACAGGTGATCACCTTCTAGTGACATTTATGAACAAGGCCAGCAGGATCTACAGCATTCAGCCTCACGGTCTTCAGTATGACAAGGCCTTTGAAGGGGCCAGCTACCAGGACGGTGTTCCCAATGATGGAGCTCTTGTGCTTCCTGGTAACATATTCACATACAGCTGGAGGGTGAGGGAAGGCCCCTCCCCCAGTGACCCAGCATGCATCTCCTACCTGTACTACTCATCCAGTGATCCAGTCCAAGACACCAGCTCTGGACTGATGGGCCCTCTGCTGGTGTGCAGAAGGGATGCGCTGAATGAGAGTGGGTCTCAGAACGGCGTGGACAAGGAGTTCTTCCTGCTCTTCACTGTGATGGATGAAAGCCTCAGCTGGTACCTGGAGGATAACATCCGCATGTTTGGCACCAGCGAATCAAATGTGGAGAATGAGGACTTTCTGGAGAGCAATAAAATGCGTGGGGTGAATGGGCTGATGTATGGAAACCTGCAGGGTCTGGATCTCTGTGTTGGGGACCGGGTGTCCTGGCATGCCTTTGGCCTGGGCACAGAAGTGGACGTACATGGGGTTTACTTCCAGGGCAACACCTTCCAAAGGGAGGGCCTAAACAGGGACACTTTCAGCCTCTTCCCCCACACCACTGTGACCGTTTTCATGCAACCGGACTCCACAGGGACATTTGGGGTGTACTGCATGACCAGTTTTCACTACGTGGCTGGGATGAGGCAGCAGTACTCAGTGTCACAGTGCGGAGGGCAGGGCGTTCCACAGGCTGCGGCCCCTCCTCCTGTGGTGCAGTACTTCATCGCTGCGGAGGAGATTGTGTGGGACTACTCCCCCAGCAGGGTCTGGGAACTGCAGAATCACAATGGCACTGAGGAGAGCAGTCCTGGGAGCATTTTTGTGGGGAAAGGTGAGAATCGCATCGGCTCCAGGTATAAAAAGGTGGTTTACAGGGAGTACACTGATGCCACCTTCAAGACAAGGAAACCGAGGCTACCACAAGAGGGACATCTTCAGAttctggGTCCCATAATCAGGGCAGAGGTCGGCGAACAAGTTCTGGTCAATTTCAAGAACATGGCGACCCTCCCGTTCTCCATGCACGCCCATGGAGTAAAGACCCCTGCTGGTCAGCTAATGGCTGTCCAACCAGGCGGGACAAAACAGTATAAATGGGACATTCCAGCAAGATCTGGTCCTGGGAGGTCAGACCCCAATTGCATCTCATTTGCCTATTACTCCACTGTTAACTTTGTAAAGGACACAGCCAGTGGGCTATTTGGGCCTTTGGTGGTCTGTAGGAAGGGGACGCTGGGCCAGAACAGGAAGAGGACGGACGTGGACAGGGAATTTGTCTTGCTCTTCATGGTCTTCAATGAAAATCTCTCCTGGTACCTGAAAGACAACATCCAAACCTACCTGGACAAGGACCCCAGCACCTTCACCGTTACTGATGACTTTGTGGAGGGCAACCAAATGCACGCGATCAATGGACAACTCTATGGTAATCTTCAAGGGCTGACAATAGTACAAGGAGAGAAGGCAGACTGGTATCTTCTCGGAATGGGGAATGTGTTGGATCTGCACACTGTCCATTTCCACGGACAGGCTTTCGTGTACAGGACAGACCTGGCTCACCGAGCAGATGTCTACGATCTGTTCCCTGGAACGTCTCAAACGGTGGAGATGATCGCAGAGAACACAGGGACCTGGCTCCTGCACTGCCATGTAGCTCACCATTTGTATGCTGGCATGGAGACCGTATTCACTATCACAAGCAGGACAGATGGGAACATCTCTAATAATGCAGCTCCTGTGCTCAGAAGCTCCCTGTTAGGCCTGGAGTCAGAGGACAGGGGATTTATGGAGGTCTCCGTAGGAACCCAGATCACCTGCTTCTCACCCACCAACTTCTCTTGGCGCCAGGCGGCCTACGTGGACTCCTTCTGCTGGGCAGCCGTGCAGCGGCAAGACCTGTCCAGCAGTGAGAACAACAATGCTCCGCTCTGGCTGCATAAGTTCTTCCCTTATATCCTCCTTCTGGTGGCCATTCTCATGTACATCCCTGTCTTGTTCTGGCGTTTCACGGCTGCACCTCATCTCTTCTCTGACCTCAACTTCATCATGGAGGAGTTGGACCGCTCCTACAACCGAGCCATCAAGCTGGCAAAGAACCTGGCATCCAACCTGGACACCAGTGATGCACGTGCAGACTCCCAAAGCAGTGTCTTGGATCTGGCAGAAGGGTGCTTCAAGTACCCCTTAGTGGAGCAGTACCTCAAGACCAAGAGGGCCTCCCGAAGCCTCGTCATCAAGTATCTCATCTGTCGCGGTCTGACCCTGGTCACCCTCCTGTTTGCCTGCCTTTACTTGGGCTACTACATCAACCTGGCATCGGTCACTGACGAGTTCAGCTGTAACATCCGCACAGGTATCCTCCATAACATGACATCCATCCCAACCGCCCTGCAGTGCAAGCTTGTGGCTGTGGGAGTCTTCCAGCTGCTCAGCTACATCAACCTGGTGGTCTACGCCCTGCTGGCCCCCGTTATCATATACACCACCCTCATACCTGTGCGGCAGAGCTCCATCTTCCTCAGACCCTACGAGGCACTGCCGACGTTCGGTATCCTGGACCTGACCACATCCCTCTACGATGACCTCAGCGTCTACCTCCTCTTCCTAGAGGAGAACCTGAGTGAACTGAAGTCCTACAGGTGCCTGCAGGTGCTGCAGCTGATCCAGGCGAGTGGGGGGGAGGCCTTGGATACCATGTGTCTGCTCCGAACTCTGGGCCAGGTCAAGACTGACGTTGTGGACGGGAAGGCGCCGGCCTCAACGAAAGCAGAGCCCGGGGAGGAGGACAAGTCCATGGAGTTAAAAGACGTCTCCACCCTTTTACTGGAGGATGGAAAAAGCAAAGACGGAAAGTGCTGTGACGAGAAGGCGGTGCGCCAAAGAGTGATCTAA

Transcript

SKAU_T00264170

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00876	Innexin	Innexin	Family	Interproscan
PF07731	Cu-oxidase_2	Multicopper oxidase	Domain	Interproscan
PF07732	Cu-oxidase_3	Multicopper oxidase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000990	Family	Innexin	Interproscan
IPR002355	Binding_site	Multicopper oxidase, copper-binding site	Interproscan
IPR008972	Homologous_superfamily	Cupredoxin	Interproscan
IPR011706	Domain	Multicopper oxidase, C-terminal	Interproscan
IPR011707	Domain	Multicopper oxidase-like, N-terminal	Interproscan
IPR033138	Conserved_site	Multicopper oxidases, conserved site	Interproscan
IPR039099	Family	Pannexin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15759	PANNEXIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005507	Molecular Function	copper ion binding	Interproscan
GO:0005886	Cellular Component	plasma membrane	Interproscan
GO:0006812	Biological Process	monoatomic cation transport	Interproscan
GO:0007267	Biological Process	cell-cell signaling	Interproscan
GO:0015267	Molecular Function	channel activity	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0022829	Molecular Function	wide pore channel activity	Interproscan
GO:0032732	Biological Process	positive regulation of interleukin-1 production	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-