Gene detail

Detailed information of SKAU_T00261180 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00261180	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	CM056385.1	1536467	1560867	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00261180

ATGAGAGTTGAACAACATTGCGAGCATGGCGATACCTCTGCAAATCCGAGCCAATTGGTGATCAACCAGCTGAGGGAAATCACTGGCATCCAGGATCTGCAGGTTCTGTGGGCAGCTTTGAagGCCAGCCAAGGGGACATGAGCAAAGCCATAAGCCTACTGACTGCACAGCCTGAGGAGGGGCCCATGCCAGAGGAGCACACCAGTGCAGATGGCACACCGGGCACCTGGCTCACACACAAACAGGTTGTTGACATGACCCCAGATGGGCCTAAATATGACCTTCAGGCAGCAATAGAGCTCAGCTTGCAAGAGTCCCAAAATGCCCAGGCAGAAGAAAGAGAGTTTATCAGAGCCCTGGAGGTCAGTGCGGAGGAGAATGCGGCacggatgaagaggaggaggtgcGAGGCATCGGGAGAGACCGCCAGCCCAGCCGACTGGATCCGACAGGAAGACTGGCCCGTGGGAATGCGCAATGTGGGCAACACCTGCTGGTTCAGCGCagtcatacagtcattgttccacctgccAGTGTTCCGCAGACTGGTCCTCAACTACCGCCTCACCGAGAGCCTGCTGCAGAAGTGCAAGAGCCACTCGGAGAAGAGGAACATCGCTTTCATGCAGGAGCTGCGGTGTCTGTTCGCCCTCATGGTGGGGTCCACCCGCAGGTTTGTGGACCCATCTGCAGCTGTGGAGCTCCTGAAGGATGCCTTCCGCACCAGTGAGGCCCAGCAGGATGTGAGCGAGTTCACCCACAAGCTCCTTGACTGGCTGGAGGATGCCTTTCAGCTGGCAGCTAATGGAAATAATCCTGATGATAAGCAAAAGAATCCAATGGTTCAGCTGTTCTATGGAACATTTGTTGCAGAGAGAATGCATGAAGGCAAAACCCTCTCTAATATCGAACAGTTTGGTCAGTACCCTTTGCAAGTGAACGGATTCAACAATTTAGACGAGTGTCTGGAAGGCGCCATGGTGGAGGGGGAGATCGAAGCTCTGCACTCAGATCAAACCACTTCCTCAGGGCGAGAACGATGGTTCTCAAAGTTACCACCAGTGCTGACCTTTGAACTGTCCAGGTTTGAGTTCAATCAGTCTTTAGGACGCCCAGAGAAAATACATAAAAAACTGGAGTTCCCACAAATTATGTACATGGACAGGTACCTCCATAAGAATATTCACCAGATGCAGAGCAGGAGGGAGGAGGTGAAGAGGCGAAAGGAGCAGCTTGTTGTCCTGCAGCAGAAACTGGAGAGCTACAAGAATTATGGCTCTGGGCCCACCAAATACCCGCTGGCAGACATGTTACAGTATGTGCTGGAGTTTGCTACCACCAAGCCTACGAGCATTTCACCCACAGAGGATCTGAGGACTGTGCCCTCACCTGCCCCAGCCTCCTACGAGACCCCGCTACACACAGACCCTGCCCATGGAGGCTCCAGTCTGTCAGAACCAGGAGATGCAGGCCCATCCAATGGTTCCAGCTGCCCGCAACTCACCACACAGAGAACCCCCATATACAAGCCCTTCACCCAATGCAGACCCCCCACGGATACCCCCCTACACCCAGCCCCCCACAGCGCCACAGAGGAGGAACTGTACTTTGTCAAGGGCTGTCTACAGCGCTGGAGGACAGAGGTGGAGAACAACATTAATGaGCTGAAGAGCAGCATCGAGAGGATGAGCCAGAGTCTGGAGGGAATGTACGCTGACCGCAGCTTGTGCCAGGTAACCTGTCCTCGTCAGGTGCCCTACCGGCTTCATGCCGTCTTAGTCCATGAGGGCCAGGCCTCAGCGGGCCACTACTGGGCCTACATCTTCGACCACTCCAGCAAGCGCTGGCTCAAGTACAACGACATCTCGGTGACCGAGTCCTCCTGGGAGGAGCTGGAGAGGGACTCGTACGGTGGCATGACAAATGCCAGTGCCTACTGCCTTATGTACATCCACGACAAGATGCCACATCTCATCACAGAGGACACCGACGATGAGACAGGACAAGTCCTGCGAGGGATGGACTCCCTGCCCGGGATCCTCCGACACTATGTGCGGGAGGACAATCGCTGGTTCCAGCAGGAGCTGCAGGAGTGGGACGAGCAGTTCTCCAAGGTCGCACAAGAGGAACCAGCCGCTCCCCCACCAGAGAACATGGAAAATCCTGAGCCAGAACCAGCAGCAGAAGAGCCCGCCCCAAGACAGCCGACACCCCACTTCACTACCAGCAGAGGAGGCTGTTGTCACTGA

Transcript

SKAU_T00261180

ggtggATGAGCGGAGCAGGCGTGACGCCGAAGTAGGTGGAGGTTTTTGGGGGAAAAGAGAAGAAAGAATCTGTTCCGGAGCTATGAGAGTTGAACAACATTGCGAGCATGGCGATACCTCTGCAAATCCGAGCCAATTGGTGATCAACCAGCTGAGGGAAATCACTGGCATCCAGGATCTGCAGGTTCTGTGGGCAGCTTTGAagGCCAGCCAAGGGGACATGAGCAAAGCCATAAGCCTACTGACTGCACAGCCTGAGGAGGGGCCCATGCCAGAGGAGCACACCAGTGCAGATGGCACACCGGGCACCTGGCTCACACACAAACAGGTTGTTGACATGACCCCAGATGGGCCTAAATATGACCTTCAGGCAGCAATAGAGCTCAGCTTGCAAGAGTCCCAAAATGCCCAGGCAGAAGAAAGAGAGTTTATCAGAGCCCTGGAGGTCAGTGCGGAGGAGAATGCGGCacggatgaagaggaggaggtgcGAGGCATCGGGAGAGACCGCCAGCCCAGCCGACTGGATCCGACAGGAAGACTGGCCCGTGGGAATGCGCAATGTGGGCAACACCTGCTGGTTCAGCGCagtcatacagtcattgttccacctgccAGTGTTCCGCAGACTGGTCCTCAACTACCGCCTCACCGAGAGCCTGCTGCAGAAGTGCAAGAGCCACTCGGAGAAGAGGAACATCGCTTTCATGCAGGAGCTGCGGTGTCTGTTCGCCCTCATGGTGGGGTCCACCCGCAGGTTTGTGGACCCATCTGCAGCTGTGGAGCTCCTGAAGGATGCCTTCCGCACCAGTGAGGCCCAGCAGGATGTGAGCGAGTTCACCCACAAGCTCCTTGACTGGCTGGAGGATGCCTTTCAGCTGGCAGCTAATGGAAATAATCCTGATGATAAGCAAAAGAATCCAATGGTTCAGCTGTTCTATGGAACATTTGTTGCAGAGAGAATGCATGAAGGCAAAACCCTCTCTAATATCGAACAGTTTGGTCAGTACCCTTTGCAAGTGAACGGATTCAACAATTTAGACGAGTGTCTGGAAGGCGCCATGGTGGAGGGGGAGATCGAAGCTCTGCACTCAGATCAAACCACTTCCTCAGGGCGAGAACGATGGTTCTCAAAGTTACCACCAGTGCTGACCTTTGAACTGTCCAGGTTTGAGTTCAATCAGTCTTTAGGACGCCCAGAGAAAATACATAAAAAACTGGAGTTCCCACAAATTATGTACATGGACAGGTACCTCCATAAGAATATTCACCAGATGCAGAGCAGGAGGGAGGAGGTGAAGAGGCGAAAGGAGCAGCTTGTTGTCCTGCAGCAGAAACTGGAGAGCTACAAGAATTATGGCTCTGGGCCCACCAAATACCCGCTGGCAGACATGTTACAGTATGTGCTGGAGTTTGCTACCACCAAGCCTACGAGCATTTCACCCACAGAGGATCTGAGGACTGTGCCCTCACCTGCCCCAGCCTCCTACGAGACCCCGCTACACACAGACCCTGCCCATGGAGGCTCCAGTCTGTCAGAACCAGGAGATGCAGGCCCATCCAATGGTTCCAGCTGCCCGCAACTCACCACACAGAGAACCCCCATATACAAGCCCTTCACCCAATGCAGACCCCCCACGGATACCCCCCTACACCCAGCCCCCCACAGCGCCACAGAGGAGGAACTGTACTTTGTCAAGGGCTGTCTACAGCGCTGGAGGACAGAGGTGGAGAACAACATTAATGaGCTGAAGAGCAGCATCGAGAGGATGAGCCAGAGTCTGGAGGGAATGTACGCTGACCGCAGCTTGTGCCAGGTAACCTGTCCTCGTCAGGTGCCCTACCGGCTTCATGCCGTCTTAGTCCATGAGGGCCAGGCCTCAGCGGGCCACTACTGGGCCTACATCTTCGACCACTCCAGCAAGCGCTGGCTCAAGTACAACGACATCTCGGTGACCGAGTCCTCCTGGGAGGAGCTGGAGAGGGACTCGTACGGTGGCATGACAAATGCCAGTGCCTACTGCCTTATGTACATCCACGACAAGATGCCACATCTCATCACAGAGGACACCGACGATGAGACAGGACAAGTCCTGCGAGGGATGGACTCCCTGCCCGGGATCCTCCGACACTATGTGCGGGAGGACAATCGCTGGTTCCAGCAGGAGCTGCAGGAGTGGGACGAGCAGTTCTCCAAGGTCGCACAAGAGGAACCAGCCGCTCCCCCACCAGAGAACATGGAAAATCCTGAGCCAGAACCAGCAGCAGAAGAGCCCGCCCCAAGACAGCCGACACCCCACTTCACTACCAGCAGAGGAGGCTGTTGTCACTGA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	DUB\|USP\|USP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR044635	Family	Ubiquitin carboxyl-terminal hydrolase 14-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43982	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan
GO:0043161	Biological Process	proteasome-mediated ubiquitin-dependent protein catabolic process	Interproscan
GO:0061136	Biological Process	regulation of proteasomal protein catabolic process	Interproscan
GO:0070628	Molecular Function	proteasome binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-