Gene detail

Detailed information of SKAU_T00248040 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00248040	SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION	CM056384.1	21351136	21358028	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00248040

ATTTTTCCCAGGAGAACATTCCTGGAAAGCCCTTCAGCTTCTGGATGTGGCTCGACTCCATCCTGGAGCTAATCAAGAAGCACCTGTTGCCCATCTGGATCGAAGGGTACATAATGGGATTCGTCAGTAAGGAGACGGAGAGAGCCCTACTGAAGGAGAAGGAGCCGGGCACCTTTCTGCTACGCTTCAGTGAGAGTCACCTGGGAGGGATCACCTTTACCTGGATGGAGCAGGGGGAAAATGGGGAGCCAAAGTTCAATTCGGTGGAGCCGTACACAAAAAGCCGCCTCAGCGCTCTGCCTTTCGCTGATATTATCCGCGACTACAAGGTGATCGCCCATGGGATCGTGCCAGAGAACCCGCTTAAATTTCTCTACCCAGACATCCCGAAAGACGAAGCATTCGGGAAACATTACAACAGCCAACAGAGAAAAGCCTTTCCTTATATACCCTCAGCGTTCATTCCGATCTCATTGTTTCCGCCTCCCTCCTCGTCTCCCGAACCCCCGATGACACCCGGAATGTTCGACATGCTGAACCAGCACCTCAGCCCCTTTGAGATCGAGACCGCTATGAGTTCACCGTATTCTGAATAACAAGGACAAATGATGCGACCCAGTCCCCCACAGTGCACCCCAGAGTCTCCCACGGGACACTCTAATTTCCGCTTGGGCTTCCTGTGGGACCAGTCCTTTGTCAAGACTGACTTCTTTTTTTGAGATATCAAATGcaattatacaacaatgagattcgaacgagtaacgtgattggccaagacgcgttccaccagtgctgggagtttatcaaaagttattgtttcaatattttttcattacttactaaacgtttatggtaatggtatgttgtataaaagcaatagatcactcggggatttgtgcgttattggatataatcactgcggagagaACACCGCAACTTGACCTTCagtctcgttgctgcgacgtcGCCGCAGTGATtgtatttccaataacgcactccctctcgtctATCTATTGCTTAAATACGTATATTCTGTAAAAAATAATGTGGATTTCCTGGTGCGGACATTGTTACTTGTGTTAATCTTATGTGTAGGTATTTGTTTCCAAGCTAAGGTGCCAGGGTCATTACTGTCCCTCATAGATGATACATGGTATATTTGTTTAGCATCAGATCATATATTATGATGGCTGTAGGAATACAGCTATCaaaagttttatattttttatactgAACATATAAAATGCATAAATTAAAAATGTCAGAACATATAAAATGCAAATAGTTATGACATTTAATTTCTAATTATTTTAAAGAAGTTGAGTCAAATTATGGAACAAAGTTTTCATGGAATATCTGTGGAACAATCATGTCAAGACGTAACCATCACACAGTTACATTCATGAAACTCTGCAAGAGCAAATAATTCTGCTCTGTAAATATCATACAACCTTGTGGATTCACAGAAAGTGTTAAACACCAACACTTACAGCAGTCCCTTTATATAATGCATCCTCTGGACTTAGCAATGTTTGTCAAACCCTTTCTGTCCATACTCAGTGGTGAGTCATTCGGTATATTTGACTTAATTAACCATGTCATTTTTTTGTTAATGGATTTGCATGTGATCTTGTTTGTTAGTGAGGGTAATCAAAGAAGGCACTTGTATTAGCAGTTCCAATCTCTCCATAAAGCTTTCATTgccatacatttgtttttttagatTTATGTAGAAATCTCACCATCTATTGTGCAATGCATTGTACTCTAATGCATCTCTGTTATGTTATGTCAATCATCACGCCATcttaaaacacaaacacagtaaAGAACGTTGCCTGTTCTTTAAATTGCCATTCACAGTTGAACAATCTTGAAAATATAGGCTTTAACTGATTGCAATTACTCTATTTACAATGTATTAAATATGCAAAATACCCACATTTGTGTGGTAAATATGAAATACAGATTCCTAAATATGTTTGTATTGCTTTTTTACAAAACTGTGACAACCAGTAAAATAAGTACAATAAAACTATTGAGATACTGATCAGCGGTGCATCTGATCTCTGAGCATCACCCTTACAATGTGCTGAATGAGTGTTTCTGCACAAGGCTACACCACTGA

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00017	SH2	SH2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000980	Domain	SH2 domain	Interproscan
IPR001217	Family	Transcription factor STAT	Interproscan
IPR036860	Homologous_superfamily	SH2 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11801	SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0006952	Biological Process	defense response	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan
GO:0007259	Biological Process	cell surface receptor signaling pathway via JAK-STAT	Interproscan
GO:0019221	Biological Process	cytokine-mediated signaling pathway	Interproscan
GO:0042127	Biological Process	regulation of cell population proliferation	Interproscan
GO:0043434	Biological Process	response to peptide hormone	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-