Gene detail

Detailed information of SKAU_T00247950 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00247950	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	CM056384.1	20992813	21028208	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00247950

ATGTCAGCCACCGTCCTCAAGCTGTCCACCAGCGGCGCTGTCCGTATTCGGATTTGCAATTCCGAGGTGGGAACGACCAGGTGGAAAGAAGGTGGCTTTGAGATCCATGAGAAGGACAGCAAAGTCAACTTGTGTTTGAAGTTCAACAGTGGTGGAGCCCCTAAAATCTTTCAGCTAAACCAAAATGTGAAGAATGTAGTACTGAGTCCTATGCAGAGCCCAGTAAGACTGGTGGTAACGCTGAAGGACTCCAGTGTGGTGACCTTTGATCGGATGCCAGGCTCGCTGGCCCAAAAAACAAAGGATTACCTTGATAAGTTGAAACAAGGCAAACCAACAGtCCTAAAGACGACCCAAGGAAGTGCAAGTTTAGGGGGTGTACTCGGGAACCGGCCAATAAAGAATGACTCCAGCCAGCACTTGCCTTCAGCAGAGAGACAGATGGTGCCAAGAAGAGCCAGTTTGGATAACCGAGAGGACTCCACCCCGCGCAAGCCCCTGGGTAGTCCCAGCAGAGTCGCCTCCACACCCCTCCGGAGCGGGCTCTCTGAGAACAGGAGTGAGAAAAGGAAGAGACTGCTAGCCTCAGAGAGTGACCTGAGCGAGGACTACCCCAAGGAGAACGACTCCTCCAGCAATAACAAGGCGACCTCTGACCCGTCCAGGAAGTTTTTACTCAGCTGTAAAGAGAAGCTGAAGCAGTCCGAGGAGAACAGGAGCTCAGGTCCTGCACCACTACAGCCTTCCTCCTTTTACAGCAGCAGATCAGTGTCAAAAGACTACACACAGAGCCATTCATTCCTGGATAGGCCAACCACTACAAGCCAGTCGCCATCTTCAAAAAGGAGCCTGCTGTTTCCCGGTCACTCTACGCCCTTTAAGAAAGTGCGCTCCAGTTTGGACTACAGCGGGTGGAACAAGTCAAGACCGACCTCTCTGACCCCGACCCAGCCTCCATTACAGGGATTCTCCAACTTGGGAAACACGTGCTACATGAATGCAATCCTCCAGTCACTGTTCAGCTTGCAGTCCTTCTCCAATGACCTGCTGAAACAGGGCATCCCCTGGAAGAAGGTTCCAGTCAACGCCCTGCTCAGGCGATTTGCCCACCTGCTAGCTAAGAAGGATACCTGCAGCCCGGAGATGAAGAAGGACCTACTGAGGAGGGTGAAGAGTGCCATCTCCTCCACGGCAGAGCGCTTCTCTGGATACATGCAGAACGATGCCCATGAGTTCCTGAGTCAGTGCCTGGACCAGCTAAAGGAggacgtggagaaggtgaacaaGTGCTGGAAGAATGAGCTTCAGTCGTGGGAGGAGCCACAGGGCTCGCGGCTGGGGGAGGAGCCTGACCTCTCTCGAATTTACACCTGCCCGGTGGCGGCTAACATGGAGTTTGAGGTGCAGCACACAATAAGCTGCAAAGATTGCGGAGAGGTTGTTACCAAGCGCGAGCAGTTCAACGACCTCTCTATCGACCTGCCCAGGCGGAAGAAGACACGCCCCCTGCGATCCATACAAGACTCCTTGGATCTTTTCTTTAGGATGGAAGAGATTGAGTATTCGTGTGAAAAATGCAGCGGGAAGTCGGCGACGGTGACACATAAGTTTAGTAAGCTCCCCAGAGTGCTGATCCTCCATTTGAAACGGTACAGTTACAATGCCCAGCTCTCCTTGAACAGCAAGCTGGGTCAGCAGGTGGTCATACCAAGGTACCTGACCCTGCTGTCCCACTGCACGGACTGCACCCGGCCCCCGCTCGGCCTGGGCTGGAATGCGCACGCAGCCACGTCACGGACTCTGAAAACCTCCCAGTCTCTCAACTCCTCTTCAGCGCTCTCAAGGAAAGGTTCTCTGAAGCCTGGGAGCTCCAGCGGCGGTCCGGCGGACTCGGACAGCGAGGAGGAGCTGACCAGGACCCGCAAGCGCAGGCTGAGCGACTGTCTGGCGGACGACGAGAGGACGGAGAAGGTGCAGCGGAGTCTTCCGCCGGAGCAGCCGGAATATAACCCTGTCAACGATGACGAGATGCTGGCCGCGGTGCTGGAGATGAGCCAGCACGAGGCCGCGCTCTCCGGGGGCCCCGACGACGAGCCTACAAGCAGCCCTGACACGGGGTTCGGGGACACGGATGCGCAAGACCTCAGCCACCACATGGACCTCCTGGAGACAGACAAACCCTCCACAGATGCACTGGACTCTCTGGACCTGACCAAGGACCTGGATGAAAACAAGGAGAACCAGACCCCCGAGGGGGTGCAGGGGGAGCTGGACTGGATGCAGCAGTACAACCTGGACcaggagagggaagagcaggaGTTGCAGCAGGCCCTGGCCCAGAGTCTGCAGGAGCAGgAAGCCAGGGAAATGAAAGAGGACGACGATCTTAAAAGGGCGACAGAGCTCAGCTTGCAAGAGTTCACAAACTCTTTACCGGAGCTGCTGTGTTCAGACGAGGACTCTGGGAATGAGGATGTGCTGGATATGGACTACAGCGAGGCTGAGGCAGAGGACCTGAAGAGAAACGCAGAGAGCGGCGAACTTGCCAACTCTTTCCGACTCATCAGTGTGGTCAGCCACATCGGCAGCAGCTCGTCATCCGGCCATTACATCAGCGACGTTTATGACATGAAGAAGCAGTCCTGGCTCACTTACAACGACCTTGACGTGTCGCGCACTCAAGAATGCACTGTTCAGCGGGAGAGAGATAGGAGCGGATACATATTCTTCTACATGCACAAGGATATGTTTGAGGAGCTGTCGGAGCTGGAGAAGAGCGGAGTGAGCGGGGAGGCAGGGCGGACCGTGCTGCAGCCCCTCTGA

Transcript

SKAU_T00247950

CATCTGCCGCGCAGTGCCTGCTAAATAATTTACGCCTGTGCGGCTGAGATTAATATCTCGCGATAGCATGTGTAATTTGTGTTCTGGTGTCTCATTCCCGCCATCATCCAGTGCCGCGCTGCTCCGTCGCGCGCTACGCTgtcaacagcaataataatacgGTCGCCCGCGTGCCGGCAACTGGGATATCAGGATTTCTTTAGGAATAATAAAGACGTTATTCCTATTTAAAAGTTGGAGAAAACGGACTCATTTTGCAAGTTTGTGTGCCACGCACCTTAGTTTGTGGACTCAACTGTACTCTCAAGCCTAGAAGAACACTGTCAGTGTGCCTCTGACAACCACTCATGTCAGCCACCGTCCTCAAGCTGTCCACCAGCGGCGCTGTCCGTATTCGGATTTGCAATTCCGAGGTGGGAACGACCAGGTGGAAAGAAGGTGGCTTTGAGATCCATGAGAAGGACAGCAAAGTCAACTTGTGTTTGAAGTTCAACAGTGGTGGAGCCCCTAAAATCTTTCAGCTAAACCAAAATGTGAAGAATGTAGTACTGAGTCCTATGCAGAGCCCAGTAAGACTGGTGGTAACGCTGAAGGACTCCAGTGTGGTGACCTTTGATCGGATGCCAGGCTCGCTGGCCCAAAAAACAAAGGATTACCTTGATAAGTTGAAACAAGGCAAACCAACAGtCCTAAAGACGACCCAAGGAAGTGCAAGTTTAGGGGGTGTACTCGGGAACCGGCCAATAAAGAATGACTCCAGCCAGCACTTGCCTTCAGCAGAGAGACAGATGGTGCCAAGAAGAGCCAGTTTGGATAACCGAGAGGACTCCACCCCGCGCAAGCCCCTGGGTAGTCCCAGCAGAGTCGCCTCCACACCCCTCCGGAGCGGGCTCTCTGAGAACAGGAGTGAGAAAAGGAAGAGACTGCTAGCCTCAGAGAGTGACCTGAGCGAGGACTACCCCAAGGAGAACGACTCCTCCAGCAATAACAAGGCGACCTCTGACCCGTCCAGGAAGTTTTTACTCAGCTGTAAAGAGAAGCTGAAGCAGTCCGAGGAGAACAGGAGCTCAGGTCCTGCACCACTACAGCCTTCCTCCTTTTACAGCAGCAGATCAGTGTCAAAAGACTACACACAGAGCCATTCATTCCTGGATAGGCCAACCACTACAAGCCAGTCGCCATCTTCAAAAAGGAGCCTGCTGTTTCCCGGTCACTCTACGCCCTTTAAGAAAGTGCGCTCCAGTTTGGACTACAGCGGGTGGAACAAGTCAAGACCGACCTCTCTGACCCCGACCCAGCCTCCATTACAGGGATTCTCCAACTTGGGAAACACGTGCTACATGAATGCAATCCTCCAGTCACTGTTCAGCTTGCAGTCCTTCTCCAATGACCTGCTGAAACAGGGCATCCCCTGGAAGAAGGTTCCAGTCAACGCCCTGCTCAGGCGATTTGCCCACCTGCTAGCTAAGAAGGATACCTGCAGCCCGGAGATGAAGAAGGACCTACTGAGGAGGGTGAAGAGTGCCATCTCCTCCACGGCAGAGCGCTTCTCTGGATACATGCAGAACGATGCCCATGAGTTCCTGAGTCAGTGCCTGGACCAGCTAAAGGAggacgtggagaaggtgaacaaGTGCTGGAAGAATGAGCTTCAGTCGTGGGAGGAGCCACAGGGCTCGCGGCTGGGGGAGGAGCCTGACCTCTCTCGAATTTACACCTGCCCGGTGGCGGCTAACATGGAGTTTGAGGTGCAGCACACAATAAGCTGCAAAGATTGCGGAGAGGTTGTTACCAAGCGCGAGCAGTTCAACGACCTCTCTATCGACCTGCCCAGGCGGAAGAAGACACGCCCCCTGCGATCCATACAAGACTCCTTGGATCTTTTCTTTAGGATGGAAGAGATTGAGTATTCGTGTGAAAAATGCAGCGGGAAGTCGGCGACGGTGACACATAAGTTTAGTAAGCTCCCCAGAGTGCTGATCCTCCATTTGAAACGGTACAGTTACAATGCCCAGCTCTCCTTGAACAGCAAGCTGGGTCAGCAGGTGGTCATACCAAGGTACCTGACCCTGCTGTCCCACTGCACGGACTGCACCCGGCCCCCGCTCGGCCTGGGCTGGAATGCGCACGCAGCCACGTCACGGACTCTGAAAACCTCCCAGTCTCTCAACTCCTCTTCAGCGCTCTCAAGGAAAGGTTCTCTGAAGCCTGGGAGCTCCAGCGGCGGTCCGGCGGACTCGGACAGCGAGGAGGAGCTGACCAGGACCCGCAAGCGCAGGCTGAGCGACTGTCTGGCGGACGACGAGAGGACGGAGAAGGTGCAGCGGAGTCTTCCGCCGGAGCAGCCGGAATATAACCCTGTCAACGATGACGAGATGCTGGCCGCGGTGCTGGAGATGAGCCAGCACGAGGCCGCGCTCTCCGGGGGCCCCGACGACGAGCCTACAAGCAGCCCTGACACGGGGTTCGGGGACACGGATGCGCAAGACCTCAGCCACCACATGGACCTCCTGGAGACAGACAAACCCTCCACAGATGCACTGGACTCTCTGGACCTGACCAAGGACCTGGATGAAAACAAGGAGAACCAGACCCCCGAGGGGGTGCAGGGGGAGCTGGACTGGATGCAGCAGTACAACCTGGACcaggagagggaagagcaggaGTTGCAGCAGGCCCTGGCCCAGAGTCTGCAGGAGCAGgAAGCCAGGGAAATGAAAGAGGACGACGATCTTAAAAGGGCGACAGAGCTCAGCTTGCAAGAGTTCACAAACTCTTTACCGGAGCTGCTGTGTTCAGACGAGGACTCTGGGAATGAGGATGTGCTGGATATGGACTACAGCGAGGCTGAGGCAGAGGACCTGAAGAGAAACGCAGAGAGCGGCGAACTTGCCAACTCTTTCCGACTCATCAGTGTGGTCAGCCACATCGGCAGCAGCTCGTCATCCGGCCATTACATCAGCGACGTTTATGACATGAAGAAGCAGTCCTGGCTCACTTACAACGACCTTGACGTGTCGCGCACTCAAGAATGCACTGTTCAGCGGGAGAGAGATAGGAGCGGATACATATTCTTCTACATGCACAAGGATATGTTTGAGGAGCTGTCGGAGCTGGAGAAGAGCGGAGTGAGCGGGGAGGCAGGGCGGACCGTGCTGCAGCCCCTCTGA

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	UBD\|Alpha-Helix\|UIM
Ubiquitin Family	DUB\|USP\|USP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00443	UCH	Ubiquitin carboxyl-terminal hydrolase	Family	Interproscan
PF02809	UIM	Ubiquitin interaction motif	Motif	Interproscan
PF16674	UCH_N	N-terminal of ubiquitin carboxyl-terminal hydrolase 37	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001394	Domain	Peptidase C19, ubiquitin carboxyl-terminal hydrolase	Interproscan
IPR003903	Conserved_site	Ubiquitin interacting motif	Interproscan
IPR018200	Conserved_site	Ubiquitin specific protease, conserved site	Interproscan
IPR028889	Domain	Ubiquitin specific protease domain	Interproscan
IPR032069	Domain	Ubiquitin carboxyl-terminal hydrolase 37, pleckstrin homology-like domain	Interproscan
IPR038093	Homologous_superfamily	Ubiquitin carboxyl-terminal hydrolase 37, pleckstrin homology-like domain superfamily	Interproscan
IPR038765	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR050185	Family	Ubiquitin carboxyl-terminal hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21646	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004843	Molecular Function	cysteine-type deubiquitinase activity	Interproscan
GO:0016579	Biological Process	protein deubiquitination	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-