Gene detail

Detailed information of SKAU_T00247380 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00247380	ENZYMATIC POLYPROTEIN-RELATED	CM056384.1	18412755	18416824	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00247380

ATGGATAAGACAGACCTCATTGTCACAGTGGACGATGCCATAAGGAAACTGGTTCTGTTGGACTCCAAAGACAAGATCTGGACCCAGGAGATGCTGCTGCAGGTCAGCAGCACtgggatggaacgagccctactgagggagataGAGGAACTGGAGCGGTCGATCGGCGAGCTGACCCGCAGGGAGGCGAGGAGGGCCGGGGCTATGACCAGCCCCGAGTGGCAGACTCCCGCGGTGTCCAGGCGACCGGgcggcttcagcggcagacaggagaatccggcatcggtaagccaCGATGGCACGCtcgcgaagccgacaatgcagctgaagctacctcgTTTTAACGGAACAGCGtcgctggagtcgtacctagggcagctagagctagcagctcagctgggtggctggacgccggagcagacagtgggacacctggcactcgccctggagggcccagcgctgAAGGTgatcctggacctgccgccggcggagcgacaaaacctgcaggctctgaccgcagcactccaacggcggttcatccagcaccgttccgccgaagcaagccgggaaaagctgctGAGCCGCTACCActgtgaggaggagagctggggaaaagtggcggccgaccctagcccaaccgggttccatcaGCGAGGCTTTGATCAAGACAACAcgggcggaagacaccctagctatccggcccactccacaaccaacccgccagcacgtcagggtggtcgacggcgaggaggtccgctggatacgcacgccactacaacggccagcAGGGTGACAGtgcgacgagccgggccatatcgcacgcgactgcccagctccagcaccaaagccacggaagcccccgtcgggaaacgaggcagggacggcgcagtgaggagaacgccgccccgggaaccaaccctcctcaaccaggtacacacccctgtgcccaaacccagtctggccttacccgccccagtggcaaagattccagctacctctgcggaggctagcacaagcgcctttgAAAAGGCGACTGAGCGtaagtcccatccacgggtaggtcggctgggcaaagccagtgggttgtacctccactgtcagctggacgggcaggcctgccgagccctggtggacacaggggctaccatctcccttgtccggccaggagtactccacaacatcggtgggccccaacttcccggggcgtggacacccaccgccacaccgctgacatcagtgacgggggcaaagatggcgatgagggggaagaaagaggtgaaggtgacgCCCAGCATCACCCTTGGCACGGAGACTGTAGCCCTCAAATCCTGCCCGACACGAAAACCAGCCCGACGAGcccgccacctagccaccacagcccggccagcaagcaagctactccagctagcaaccgcacccaagccaccgtcactgaccacagtgccccagcccgaccactcgctcgcccaccaccaccagcctgccacacagcaaccgcctgcccagcccaaaccagctctgcctgctGAGACGGcagcagctgtccacgccctgtggcaacgaagcagcagcgggctcgaccaccagcagcgccagcagctcaaaagcctcctggacgGAAACGCAGACCTGTTCGCggtgcgggatgaggactgtacccagaccgagctggtgcagcacaccatcaacaccgacacaactcaacccatccgtctgcggccgcaccggatgtcccctgccaagcgactggtggcagaggaaaaggaggggcaatccatggcctttgaccagctcagggcggccctcactgaagctccggtgttggcgtaccccgacgcccagcgacccttcatcatcgacaccgacgcaagcaacaccggagtgggggccatcctgtcacaggaggacgaagacgacgagcgagtggtggcctactacagccgggccctggggaaggcggaacgcaattattgcgtcaccaggcgggagctgctcgctgtggtcagggcgttgcaccacttccggccaTACCTGCAAGGCAGCgacttcctcctgcgcaccgaccacgcctcgctcacctggctcctaaattttaaagaccctgaggggcAAGTTGCTCTGCAAGTTGCTCTgcaactgcaaggctatgacttcgaaatccagcaccgggcaggccgacttcatgggaatGCAGATGCTTTATCGTgccggccgtgcgcagcccaggagtgtcgctactgtagccgccaagaggaacgggactag

Transcript

SKAU_T00247380

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08416	PTB	Phosphotyrosine-binding domain	Domain	Interproscan
PF17919	RT_RNaseH_2	RNase H-like domain found in reverse transcriptase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR011993	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR013625	Domain	Tensin/EPS8 phosphotyrosine-binding domain	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR041577	Domain	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34072	ENZYMATIC POLYPROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-