Gene detail

Detailed information of SKAU_T00246100 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00246100	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	CM056384.1	12627067	12632860	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00246100

atggaacgagccctactgagggagataGGGGAACTGGAGCGGTCGATCGGCGAGCTGACCCGCAGGGAGGCGAGGAGGGCCGGGGCTGTGACGAGCCCAGAGTGGCAGACtcccgcggtgcgagtgtccaggcgaccggacggcttcagcgCCAGACAAGATAATCCGACATCGacagcgggacacctggcactcgccctggagggcccagcgctggaggcgatcctggacctaccgccggcggagcgacaaaacctgcaggctctgacagcagcactccaacggcggttcatccagcaccgctccgccgaagcaagccgggaaaagctgctaagccgctaccagtgtgaggaggagagctggggaaaagtggaTGTGCCCGCGAGGCCTACCATgcagaagagaagagagagagaggagaagctagcgctgcatgcatttctCGAGGCTTTGATCAAGACAACAcgggcggaagacaccctagctatccggcccactccacaaccaacccgccagcacgtcagggtAGCCGACGACAAGGAGGTCCGCTGGACACGCACACCACTACAAAGGCCAGCGGggcgacaaggccggtgctaccagtgcgacgagccgggccatatcgcacgcgactgcccagctccagcaccaaagccacggaagcccccgccccgggaaccaaccctcctcaaccaggtacacacccctgtgcccaaacccagtccggccttacccgccccagttgcaaagattccagctacctctgcggaggctagcacaagcgcctttgAAAAAGCAACTGAGCGtaagtcccatccacgggtaggtcggctgggcaaagccagtgggttgtacctccactgtcggctggacgggcaggcctgccgagccctggtggacacaggggctaccatctcccttgtccggccaggagtactccacaacaccggcgggccccaacttcccggggcatggacgcccaccgccacaccgctgacatcagtgacgggggcaaagatggcgatgagcGGGCAGGAGggccaGCATCACCCTTGGCACAGAGACTGTAGCCCTCCAATCCGGCCCGACACAAAGACCGGCCCGACGAGCCCGCCAtctagccaccacagcccggctagcaagcaagctactccagctagccaccgcacccaagccaccgtcactgaccacagtgccccagcccgaccactcgctcgcccaccacaACCAGCCTGCAACACAGCAACCGCCTGCCgagcccaaaccagctctgcctgccgagacgacagcagctgtGTTCGCGGTGCAGACCTGTTCGCggtgcgggatgaggactgtacccagaccgagctggtgcagcacaccatcaacaccgacacagctcaacccatctGTCTCcggccgcaccggatgtcccctgccaagcgactggtggcagaggaaaaggtgaaggaaatggcagcacctgcggtcctggtccagaaaaagagcggggagtggaggttctgtgtggactacaggcgtcttaactccgcgaccaccaaagactcctacccactcccccgcatcgacgaggccctggaccacatcagcgggtcgagctggttcagtttgctggacctccgcagcggctactggcaggaggggcaatccatggcctttgaccagctcagggcggccctcactgaagctccggtgTTGGCATACCCCGACGCCCAGCGTCCCTTCATCATCGACACCGACaccctgaggggcaagttgctcgctggctggaggggctatgacttcgaaatccggcaccgggcaggccgacttcatgagaacgcagacgctttatcgcgccggccgtgcgcagcccaggagtgtcgctactgtagccgccaagaggaatgggaccaggtgagcccagatgtggtggtggtccaggccagcggcgacgcggaggggtggctgccgctgatgcccatggagctgcgagaggcccaggaagcagacagcacgctgggcaagatgcggggctggctggaggcggggcagcgtcccgagcggtcggtgaTGGTGGCAGGCTCCAGGCcgggcagcgacatcctgcagctgttggtgccacgggcgctccgccctgatgtcctcaggttggtccacggcttggtgggggcgggccacttcggcaataacaaaaccctgcaccggctgagggggaagtttcactggctggggtgtcgtcacgacgtcgagctccacatccattgcgtatgtatgtatgaggcgaaaatgcgaataggcctcctcacgtga

Transcript

SKAU_T00246100

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00098	zf-CCHC	Zinc knuckle	Domain	Interproscan
PF17921	Integrase_H2C2	Integrase zinc binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001878	Domain	Zinc finger, CCHC-type	Interproscan
IPR001969	Active_site	Aspartic peptidase, active site	Interproscan
IPR021109	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR036875	Homologous_superfamily	Zinc finger, CCHC-type superfamily	Interproscan
IPR041588	Domain	Integrase zinc-binding domain	Interproscan
IPR043128	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR043502	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR053134	Family	RNA-directed DNA polymerase homolog	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0004190	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-