Gene detail

Detailed information of SKAU_T00237690 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00237690	TGF-BETA INDUCED APOPTOSIS PROTEIN	CM056383.1	52374584	52443337	-

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00237690

CTATACCGCAGTTCTTTTTTCTGTCTGCACGACTCCAGGTTCTTCATCCACTTGGGACCGATTGGTTGACCATAGTCACGTTGTCAGCAACGCTGTCAGACTCATCCTGCACCATTGTTTCCGCTAGCAGCCGGCTTGCGTGTTCGTGAGGTAACTGCCGGGTAGTCAACCCATAATTACAACTAATGTCACCAATGCTAAGTTGAAATACTATAGTTTTTACTTAAATCAAGTTGATGCCTTCATGcgcaaataaaacatttattcagCTTTTAGAGGTATTCATTCACACTGCGTTAAAGCGACCAGGTCCTCTCATAATGATTTAACAACACGCATGGAAAGAGGCATTTCTTAGAACTTAAATTCATCTTTTGCTGCTTAAGGTGCAGCCCGTCGCCATGAGCGGAATACTGAAGAGAAAGTTCGAGGAGGTGGACGGCTCGTCTCCGTGCTCGTCCCTGCGGGAGTCGGATGACGAGGTCTCCAGCAGCGAGAGCGGGGACAGCAGCGACAGCGTCAACCCCTCTGCCTCAAGCCACTTCCCCCcCTCTTCCATACTGAAGCGTGAGAAGCGGATGAAGACCAGGAACGTGCACTTTGAGAACGTGACGGTGTACTACTTCAGCCGGCGCCAGGGCTTTACCAGCATCCCCAGCCAGGGGGGGAGCACCTTGGGCATGGCCAGCCGGCACAGCTGCATCCGGCAGTACACCCTGGGAGAGTTCGCCCTGGAGCAGGAGAGGATCCACCGAGACATGCTCAAAGACCACCTCAAGGAAGAGAAACTGAACTCTATTAAACTGAAGCTTACGAAGAACGGCACGGTGGAATCGGAGGAGGCCAACGTGCTCACGGTGGACGACATCTCGGACGACGACATCGACCTGGACAACACGGAGGTGGACGAGTACTTCTTTCTGCAGCCGCTCACCACCAAGAAGCGGCGGGCCCTGCTGAGGGCCTCGGGGGTGAAGAAGATCGACGTGGAGGAGAAGCACGAGCTGCGGGCCATCCGCGTGTCCCGGGAGGACTGCGGCTGCGACTGCAGGATCTTCTGCGACCCAGAAACCTGCGCCTGCAGCATGGCAGGAATCAAGTGTCAGGTGGACCGCATGTCTTTCCCCTGCGGCTGCACAAAGGAAGGCTGCAGCAACACCGCCGGCCGCATTGAGTTCAACCCCATCCGGGTGCGAACTCACTTCCTGCACACCATCATGAAGCTGGAGCTGGAGAAAAGCCGCGAGCAGCAGGCCTCCGCTGCCAACGGTTACCACGGAGACATCAACGCGCACGCCAACCCGCTGGTCCAGGCCCAGCACAGTCTGGAATATACCCTGGCGGACGCCGTCCCGCCGACGGCTCTCATGCACCTCCAGGCGTCGGAAGAGATGGACGATCccgacgaggacgaggacgacgaggaggaggaggaggacgacgacgacGAAGAGGACAACGAGGAGGACGAAGATGACGGCAGCAGCCTCTGCAGCGGCCTCACCGACTCCAGCACCCAAAGCCTGGCGGCCAGCGACTCCGAGGACTCCGAGGACGATGAAGACAAGCTGGACGATTTTGAGGACGGCATGAGCGCGTCCCCTGTGTCTCACGCCGAAGTCGTGCCGCTGTCCTCGGTTTTGTGTTACTCAGACAGCGCGTCGGCGCACAACGGCCACGCCAACGGCAACTCGTACTTCACCAGCTCCACAGCAGAGTGTTACCAGTTGGAGACCTCTGGCACTCCCTTAGCCAACGTGACTGTCGGCCAAACTGCAGAGCCCTACGGCGAAGCCCAGCCTTTCCAAGAAAGGGTGGCCAATGGCAGTGGGGCTATGTTCGGCATAGCCTCTGAGCAGTACCCCAATTACTCCAGGCCGTCTGAGGAACGGTACACCAATCACCTCTTCTCTGTGACCAACGGTGCATCCTCCAACCTTGGCTGCCGTGCGCCAGACCTGGAAAACAATGTCCAGTCCAACGGGGCATGCCATGACCTGCCAAAAGGCCCCTCCCAGATGGAGATCCAGAACTACTTGAACAATAACTCACAAGAGCGCTACACTAATAACGGGAACTGTTTCCTGGCAGAGAAGCCTCAGGACCTGTCTAATGGGCTGTCTGAAGTGTCCTCCCTGCCAGACGGTAGTAAAGCCCCTCCGTCTCTAGAGAGCTTTCCCCAGGTCGCATCAGTTTAGTGTGCCGCACCTATTAAGGAATTTCTAAATACAATTAATGAACTACGAAGGGGCAATacatgcaattttaaaaaaactgaatttaCGGCAAAGTCTGAATTAGTGACTTTTGCTTTAGATACACCTTTTTAACAAATTGCACATGCAGTTTTCATTTAAAAACCCTGCCCGTTTAGAAAAAGGGTCCAGGCTCAAAGTGGGCCTGTTTTTGTGGCATCCAACTGTCCCTGtaatatattaattttaaatgCAAAATTAAAAACCAGAACCATGTGTAAGCTTTAGGCCTGTGAAATGTAAGTATCTTGTCATTTAAAAGTAAAGGTTCTAGTTTTCAGCACATTGTGGATAGAACTTTTATATGTCCATATGTCGACTGTGGGGAAAAAGTACATTGTTTCAGTTTATTTATGGGGTTATGAAGTGTATGTAAAGTTATGTTTGATAATGAAAAGCATGTTATTTTTGAGCTGTTGTTGGCATTTATGGCATTTTATTACAATATGAGTTTTAAAATAGCTGTGTACATGTACTGTACAAACATTTATGTTATATCTATTTTGTGCTTTTCCATTGGTTGTAATGCATGGGATTGGCTCTGCAATATTTTTGCAAAATCTCTGTTGCGTTATAAGTTAAAATGTAAAAAGCATAAATTGATTTGAGACGTATAAATGACATGAAGCTATAGTTCTGCATTTGCACTTTTTCGACTGAATTCTGAGAAGGGGCAGTTGCCATGTAATTACCTTAATGACCAAAATACTTGAATTATGATACAAGCCAATACCTGACTTTTTTGGATAATTGTTCAGTTTGCGATCAGTATTTTTCCTGCATTTGCTAACAGTTCTCAAACATATTTTAACTTTACAACACAAGTaacaaaaaatttaatattttaacaAACGTATATCATAAGAGGTGAAACTGAGATCATTTCAGCTTTAGTATCACATTGTGACACAGAAACAGATATTGCATCTTAGCATTTGGTTATGGACCTTGTCTTTCTTTTATAAAGCATTGCATCTTCTTAATAAGCTTTACGAATGTTAAGTAAACCACTTTTTCTGGAAAATTAAACCACATATGGCTGGATCACATGTAGCTCCAAAGCTCCCCAAACGTTTCTGGTGTGTGACTATAGCTCATGTCTTTGACTGTTTCAGCTTGGGGGTCAGAATGCTGTTGAAGGCAACACTCATTGTAAACCTACAATGTACGTTTTTATAATTGTGTGAAACAGGATGTATTGTCTCTAGAAAACATGATCTTGTCACTTATAAAAGGTAGTGGACCACCTGAACAAACAGGGGGCAGGGAGTGTAAACTAGTTTTTACTGCAGATTTGGAGATGTCTATTTTTGGCATTGGAGACATGCTGATACTGTAGGTGTACAATTCtacaatgacattttaaatgcaaCGATGGGAAAGTATTTTAAAAAACGGTGGGAAAGTCTATTTCTTTTACAGAGTGCAATAGCATCTGAAAATGGTGCGAACATCTCAACTATTAAATGTGGGGGTGACCCAATTTGTAGTTTGAATGAAATCAAAGTTTTCAATCGAAGGGCATTATGAGAGTGATGTTTTGAACAATTACACAACCAGATCTCTGTAAACGAGTAGCCTAATTTGTGAACTGAAAATCATTAGGTGCGCATATATCGAAAACCGTGTCTTGAGAATCATTAAAGACAATCCACAAACCGCTGAATGGTACCATGAACATACGATATAGGCCTAACCAATATTTAATTCTTTTAACGATCCAGCTCGTAGGCCTAATTCACTGAAGGCATTTGAATGTTAAAagtaatattaaatatataatactatAACAGATCTCGCTGGGTGGCAGAAATCTCTCTCTGTATTTAGGCTATTCTgctatacagagagagagagagtgcagtgagTGAAGGCCTTATATTAGGTGGTAATAGGCCTATCAGAAGCCTGGAATAAGGATTTAGGCACTGATATATTATTATTTGCTATATTATTTACCATTAGCCTCAACGTTTATTAATGCAGGAAAAATGCAGGTAAACACGCAATGTGTGATTAGAAGAGATTCCTCAAGGCATACGTGCTATTCGGCAAGACCGTCATAAACACTTTAGTTGGATTCAGAATACCTTTTTTCTCTTAACTGGGGTACGAAACTGAACTGACGCTCTCTGTTCTGAAATCTCAGGGCGAGAATCGCCATTCCCTTGACAGATTGTGCCAAAGCAGCTGAAAACGGACAACCAGTGACGTTGCTCTGAGTTTGTGTTAATCTGCTGTATTTATAATTTTAAGTATTTATTAATGAATGATATTAAAATGCGTATTTATTGTGGTTTATTGCAAAAGTCTGTATTAAGGAGGATGCTTCTGCGGTCTTAAATTGTCCTTTGTTTTCTGATGGTTGTGAAATGTGTCTAGCTCTTGTTTTAGCTGCGATATGTGCCTGTCGTTATGTTCATCTTAATTATCTCTGTTCAAATTGCAGGAATTGGTAAAACTGAAAATCTAATTTCACAGAATGTTAGATAGCTAGATAGATGTTAAAAAACATGTATTGGGGTTTTAATTACTATTTAGAAGAAAAGAGCCAAAtgtttacttttttgcttttccaCCAGTACAtgacttttaaataaataaataaataaataa

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	CSRNP_N

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16019	CSRNP_N	Cysteine/serine-rich nuclear protein N-terminus	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023260	Family	Cysteine/serine-rich nuclear protein family	Interproscan
IPR031972	Domain	Cysteine/serine-rich nuclear protein, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13580	TGF-BETA INDUCED APOPTOSIS PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-