Gene detail

Detailed information of SKAU_T00236650 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00236650	SEC14 DOMAIN AND SPECTRIN REPEAT-CONTAINING PROTEIN 1	CM056383.1	47342120	47373818	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00236650

ATGGAGGCTACAGCCGTGCTTCCCGTTCTGAAGAAAAGGCTGGCTTTCCTGTCAGGAGGGAAGGACAGACGGAGCGGCTTGATCCTGACCATCCCGCTGTGCACGGAACAAACCAGCATGGAGGAGCTCAGCTCCACGCTCGACTATCTGCTCGGCATCCCCAGTGAGAAGTGCAAAGCACGAGGCTTCACGGTCATTGTAGATGGGAGGAAGTCACAATGGAATGTGGTGAAGACGGTGGTACTCATGTTGCAGAATGTTATACCAGCAGAGGTGTCCTTGGTATGTGTGGTAAAGCCTGATGAATTCTGGGACAAGAAGGTGACCCACTTCTGTTTCTGGAAGGAGAAAGACAGGCTTGGCTTTGAGGTTATTCTTGTATCTGCCAATAAGCTTACACGCTATATTGAACCATGCCAACTGACGGAGGAGTTTGGGGGAAGCCTCCTTTATGATCACATGGACTGGCTGAACAAAAGACTGGTCTTTGAGAAGTTCACTAAGGAGTCGACATCCCTCCTGGATGAGCTTGCTGTCATTAATGAGAATGAGAAAGGAAGCCAGCCAGACAAAGAGAGACCCCCAGATTCTACCTTCCTACCATCATTTGACCCTGAAACTGTCCTACAGACCGGTCATGAGCTGCTGTCTGAGTTGCAGCAGCGACGCTTTAACGGTTTAGAGGGCGGGAAGGCCTGGTCTCCCATGGATGATGAGCTGCTGGCTCAGCCACAGGTTATGAAGCTGCTGGACTCCCTGAGGGAACAGTATACCAAATACCAGGAGGTGTGCAGGCAGCGCAGCAAGCGTTCGCAGCTGGACGAGATCCACACCAAAGTCATGCAGGTTGTGAACTGGCTGGAGGGCCCAGGTACGGAACAGCTCAGCAGGCAGTCTGGGATTGGAGATTCCATCAGAGCCTCGCAGGCCTTGCAACAGAAACATGAGGAGATTGAGAGCCAGCACAGCGAGTGGTTCGCGGTGTATGTGGAGCTGAACCAGCAGATGGTGGCGCTCCTGACCGCGGGGGATGAGGAGGACCTGGAGCAGCTGAAGGGTCTGCAGCAACAGCTGAGTGACGTGTGCTACAGACAGGCCAGCCAACTGGAGTTCAGACAGAACGTGCTGCAGTCCGCCCACCTCTTCCATGGCACCGCTCATGACTTGTCCCAGCAGTTGGATGGACTACTGGGCATGCTCTGTGCAGATGCCACCCCAGCTGATGGAGCTGCCATCCAACAGACTCTGAAACATCTAGAAGAAAAACTCAAGAGTGTGGAGGGTGGTTTGCAGGGATTAAGGGAGAAAGGACAAATCCTCCTCAACCAAATCTCCAATCAGACAACCTGGACATACGGGAAAGAGGTAGCTGCTGAAAGCAAAGAAAACGTGGAACATGTTCAGAGTGTCATGGACGATATGCAACTACGGAAACAGAGGTGTGAGGACATGGTGGATGTGAAGAGACTGAAGATGCTGCAGATGGTTCAGCTTTATAAGTGTGAGGAGGATGCTGCCCAGGCAGTGGAATGGTTGGGTGAGCTGTTGGATGCGCTCCTGAAAACTCATATCAGACTGGGAGATGATGCACAAGAATCCAAAGTACTTCTGGAGAAACACAAAAAATTTGTGGATGTCGCTCAGAGCACCTACGACTATGGCAGACAGCTGCTGCAGGCCACTGTGGTGCTGTGCCAGTCCCTGCGCTGCGCCACCCGCTCCTCCGGCGACACCCTACCCCGCCTCAACCGCGTGTGGAAGCAGTTCTTCGTCAGCTCTGACGAGCGGCTTCAGCGGCTGGAGATGTCGAGCTCCTTTCACTCCGCTGCAGAGAAGATCCTGAAAGAGAGTCTGGAACAGGCGGAGACTGCCATTGGCCCAGAGACTTACGAGGAGGTGGAGTCGGTCGGGAAGTCCCTGTTGGACAGGCTGACGGTGCCTGTCGTGTTTCCTGATGGGAGCGAGCAGTACTTTGGCAGTCCAAGTGATATGGCCTCCTCTGCCAAACAAATCAGAGACAAGATGAAcctggtggaggagaggaggctgCAGCAGGAAAAGGAGGAGCAGCCAGAAGCAGAAGATGagcaagaggaggaggaggaggaggaggaggaagaagaagaacatTTTGAGACTGACCCCCAGCACAGCTAG

Transcript

SKAU_T00236650

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13716	CRAL_TRIO_2	Divergent CRAL/TRIO domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001251	Domain	CRAL-TRIO lipid binding domain	Interproscan
IPR018159	Repeat	Spectrin/alpha-actinin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46607	SEC14 DOMAIN AND SPECTRIN REPEAT-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005546	Molecular Function	phosphatidylinositol-4,5-bisphosphate binding	Interproscan
GO:0010314	Molecular Function	phosphatidylinositol-5-phosphate binding	Interproscan
GO:0032266	Molecular Function	phosphatidylinositol-3-phosphate binding	Interproscan
GO:0043325	Molecular Function	phosphatidylinositol-3,4-bisphosphate binding	Interproscan
GO:0070273	Molecular Function	phosphatidylinositol-4-phosphate binding	Interproscan
GO:0080025	Molecular Function	phosphatidylinositol-3,5-bisphosphate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-