Gene detail

Detailed information of SKAU_T00226200 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00226200	SHORT STATURE HOMEOBOX	CM056383.1	73515	80728	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00226200

CAGCAGGTCTGAACTCCGCAGCAAGAAGAATTGGCCAAGATCTTATACATTTAGCTTAGCGCGAGATCTAGAGTTGGCAACAACATCACCTCGTATTTAGGTCGACGAAAAGAAACACTATTGATGTCTTATCGTATGCTGTTGTGGAACTGAGAAAAAGAGAGTGAGAACGAGAAGGGAAGATTTTTTTTGGAGCAGTGATGGAAGAACTTACCGCTTTTGTGTCCAAGTCTTTTGATCAGAAAGTCAAGGAAAAGAAGGAAGTTATAACGTATAGGGAGGTGCTGGAGACCGGATCGGCACGGGGCAGGGAAGCGCTTTCCGCCGAACAGAGTCGCGAGGAGGTGAACGCTATTGCCCGGGGAGGCGCTCGATCGCCGGGTAGAGAGCCGGACATGCTGGGGCCAGAGCGAACCAGGGATGCGAGCAGCCCGAAACTCATGGATGGTAATACGGATATGAAAGAACGAAAAGAGGATTCCAAACCAATGGAGGACGAGACACAAACTAAAATCAAGCAGAGAAGAAGTCGGACTAACTTTACTCTGGAGCAACTGAACGAGTTGGAACGGCTGTTCGATGAGACCCATTACCCTGACGCGTTCATGCGAGAGGAACTGAGCCAAAGGCTCGGACTGTCTGAAGCGCGTGTTCAAGTTTGGTTTCAGAACCGGAGGGCCAAATGCAGAAAGCAGGAGAATCAGTTACACAAAGGGGTGCTCATCGGGGCTGCGAGTCAGTTTGAAGCGTGTCGCGTAGCGCCATATGTCAACGTGGGAGCCCTGCGCATGCCATTCCAACAGGATAGTCATTGCAACGTGCCGCCCTTCTCCTTTCAGGTCCAGGCGCAACTGCAGTTGGACAGCGCTGTGGCCCACGCGCACCATCACCTGCACTCTCACCTGGCTGCGCACGCACCTTACATGATGTTTCCAGCGCCGCCATTTGGGTTGCCCCTGGCTACTCTCGCGGCTGAATCTGCCTCCGCAGCCTCGGTTGTGGCTGCAGCTGCGGCTGCAAAAAACACCAACAAAAACTCCAGCATCGCAGACCTCAGACTGAAggccaaaaaacacgccgctgcACTGGGACTGTGACACGGACACGCGCATGAAAAATGGTCTGCGATGTTGACTGAGAGTGAACGACAAGGCAGAACAGCAAAAACAAAAGGCGTACAATGTAAAAGCAAGGACCTTATTTATGCTTTTCAAAAATGAAGGACAAACAAGTATAGGATATCTATAAAGATAGGCTATTTATAAAATCAAACTGTGAAATCGAAAATAATTTTGGATCCCGAAGACGAGCGGTGGAATTGATGTATTTACCCAACTTCTGAAGACAACGTGGGAATAGAAGCAacacagagaggagaggaagagcaCCAACAAAGCGGGGAGAAGAAAAGATGTCTATAAAAAGCAAGATTATATGAGTATAGGATAACGCAGCTGGGACGTTCGGCTCTTTGTGTGACAAAGCGAACTATTCTGCGCAGTTTTACTTTATTACGTTATTATTTGATTTTGAAAATAGAGGCTGGCCTCGTTTTATTTCAACATGTTCCAGAGTTTCCCTCAAAGGAAACTGTGGAtatttctgaacaaaaaagagaaagaaaaaagagacATTGTGGGAGAGTTTTTTTCCTGTTCGTAACAAAATGAAAACGCCAGACGTGTTTGCATGAATTTCTCTCTTCGCGGATGACGTAACTCGTGTCAGTTACGTATCATTCTCATGCTCTTTTTGATGGACAGCTGTCATTCATAAGAATTAAATAAACGAACAGTCACTTGAATGTTGTTGGGGTCTTCGATTGAAAGaccgtggggtggggtgggttttgAAATGCTGGGATGATTACCACaagttttaataattattattgagtGTAACAAACCTCATAAAATATTTCAGGTTTTAATCAGTACGTACGAATAGTGTCCATATTTGCAAATGGCAAAATATCCATTTAAATCTGCATATCAGAAATGtaactttttaaataaaataaatattaggcCGCTTAATAAAGAGGACCCCTGTTATGAAACGGTACGGGCACATGTAAAATATGCTGATACTCAAGAAACAGAAAATTATTTTGATTATTTTGTGGCTTAATAATACATTGtaggatttttttgtttttccgtgTGTTGACTCatgtgcattctctctctctgttgtaatGTTGATGTTTTTATAACGGTGGAAGAAAGCGTATCTCTGCAGAAGGCACGAATTTCATAAAATATAATTGAAATcatttttacatttacttttagtATTTCATCATCTATTAATGTGAAACGTGGTGTCACCTAAACACAATTATTTCAGTTCATACAATAAATCAACTAAACTTTTCTACAA

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	Homeobox

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00046	Homeodomain	Homeodomain	Domain	Interproscan
PF03826	OAR	OAR motif	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000047	Conserved_site	Helix-turn-helix motif	Interproscan
IPR001356	Domain	Homeobox domain	Interproscan
IPR003654	Domain	OAR domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR052631	Family	Paired homeobox Bicoid subfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46255	SHORT STATURE HOMEOBOX	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:1990837	Molecular Function	sequence-specific double-stranded DNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-