Gene detail

Detailed information of SKAU_T00225500 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00225500	RAP GTPASE-ACTIVATING PROTEIN	CM056382.1	75660827	75686508	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00225500

atggagaaagagagaagcaATGACAAGTTCTTTTCCAGGAAGAGAAGTTTCACTTTTGGCGCTTATGGAGGGGTTGACAGGTTTATCTGTGAAACGCGACAAGAATCTATAGAACGCAGCATCCTGGACATACTGGACTCTCCCACTAATGAGACCAAGTCTGTCCTCACCGCAACCACAAACCAGAGGGGAAGCCGTCTAGATGAACAGCGCTGTGCGTTCCCTCCCCCGTTGAAGCTTTTAAAGATAAGCAGCAACCTCCCCTTGATTCTCCCCCCAAAATCAGGAGGCTACTGGATAGATCCTCCCTTTGAAAAGTTTGTTGAGACCAGCCCCACCTCTTCTATCCCTGGACTTGGAGTAGAGAATTATGACATTATGGAACGGGACAGTGAAGCAAAGAACTACAGAGAATGGTTCAGATCCAAGTATCATAACTCATTCACAGCAGTTGACCCTTCGCTAGGATCGCTTGTCCTCTCTGTTTGTTTGGAGGAAGAAGAAAACAGACTGAGAATCATACTGAGAATGAAAGAATGCACTCTGCATGGaatcttctctctgtctctcttctcaCATTTCCCTACCGCTATTGAGCTGGCTAAGatGTTGTGTGACTCTGTGACTGTGTCCCGATTTGAGGCTGTCAGTTACCTCAAGgcaCCAGAACTCATCACAGCATTTGATGAACATAGAGTGTCACAGAACTTCAAGTTTGGTGTTTTGTACCAGAAAGAGGGACAGCTGACAGAAGAAGATATACTTAGTAACAATGAAGAAAGTGAGGAGTTTCAAGCTTTTCTATCAATTCTGGGGGAGACAGTGAAACTACAGGGCTTCACTGgGTtcagaggaggtttggatgtgtgtCATGGTCAGACAGGAAGTGATGCAGTTGTCACTTCCTTCTGCGGGAGAGAAATAATGTTTCACGTTGCCACCAAACTACCCTTCACAGAGGGTGACACACAGCAACTGCAGAGAAAAAGGCACATTGGAAATGATATTGTTGCATTGGTTTACCAGGAAGGTCCTGCCCCTTTTATCTGTGACATCATCAGTTCTCATTTCCTGCATTGTTTCATAGTTGTCAGGCATATGCCAAAAGGAAGTGGGGCCGAAGAAGCAAAAGGTCCAACATTTCAGGTGTCAGTCACAGCAAGAGAGGATGTGCCTCCATTTGGTCCTGCCCTCCCAGATCCACCTATTTTCACAGAGTGCTCTGGCTTCAGAGAATTCCTTTTGACCAAACTTATCAATGCAGAGATCTCCTGCTACAAGGCCGAACGATTCAGCAGATTGGAGctTCGCACTCGTTCATCTCTCCTGGAGGGACTGAGATCAGAACTGTCCTCCCAgtcccagtgcatgctgggagagTCAGcccctccagctctctctctttctgacgGGGTTAGGGGCGGGTCAGAAGCAGGTGGTGGGTTCATTGAAAACTTCAAGagagcAATCAGGGTGCGCAGCCACTCTTTTGACACCCTGGGGGTACCTAAAAAGGCAGGCGGAGGGGGGCCACCACAGAAGCCTCGAGTATCCCAGGGTACATCATCTGGAGCAGACAAAGAAGGAGAAAGTGAATCAACCAACAAGCAGTTGGGACCCAGCCTTCAGCTGAACGGCAGTCCCAATTCTGGAGATGAAATTGTTTATGAGATGGCGGGTACCAGAAAAGTGATCGAACTTTTCTATGACGTTGTATCTCCTTATACTTGGTTGGGGTTCGAGGTCCTCTGTCGCTACAGAAGTGTGTGGAATATTGACCTTAAACTTCGCCCAGCCTTTTTGGGAGGAGTCATGCAGGGATCAGGCAACAAACCTCCAGGTCTAGTCCCCAACAAATTTATTTACATGGGGAAAGACTTGACACGGCTGGGGCAGTATTTTGGCGTTCCGCTTGCTTTTCCTGCAAACCCCTTTGAAGCTATGTTTGATAAAGGCTCCCTTGCAGCAATGCGCTTTGTCACAGCAGTGGCCGAGAGTAGGGAAGGCAGAGAggcggacgtggagaacgtgtcgAGGGAGCTGTGGAGCAGAATATGGAGTCGAGACGAAGATATCACCCTGCCGGCCTCACTCTCTGAGGCAGGTCTGAAGGCAGGACTTTCTGCCGATGAAATAGAGGAGCTTTTGCGATTGGCCAGCTCTCAGCAAATCAAGGACAAGTTGAAGAGCACAACCCTGGAAGCATTAGATTATGGGGCATTTGGATTCCCTCTCATAATATGCCATGTTAATGGGAAGAAGGAGATGTTCTTCGGGTCAGATCGATTCGAGCTCATGGCAAGCTGCATAGgggagcagtgggtgggacCTCAGCCCGCCAAGATGAGTGCCAAGATGAAAAACAGCTTTGGATTAACACCCATTTCATCAAGATATCAGCCTGAGAGGATGTCGTCTGTCTCTGATGCAGATAGTCGGTGTAAACCGGGAGACACCATCTGCGAGATTCGGGTGTATGAGCAGGAGGTGATCGTAGTGCCCGTGCTGTTCCTCTTCGCCTTCTTGATAATGCTGGTCTTCCTGCTTCTGCTGCGGTTCTGCCCGGATAAAGTGGACCGCTTACGACCGGAGAACGTCAGCACGGTGATGCGACCAAAGAGGTCCAGGAGAAACCTGCAAGGAATTgacgCACCCCTTGGAATTAACCCCTTAGAGCACGAGAGCATCGCCTTGGATGTCCCCACCTACTCCACCTTTGTCCCTCCTGAGCACGCCCCTCCCATTTCCCTGGCTGAACCCACCTACGCCACCTTCGACAGCTCCTCTCAACAGCCCAATCACCTGCCCCCAGAGCTGCCCATGCAGAGGCTGCCTGAGTCATTCAACCTGGTCTCTCCTCTCCCGCTCACGTTCTCCATGAAAGCTATGGACTCGGTGTCTCTGTACAGAGCCAGGATGGGCCACAGAGATGTGATTCTTAGAGTTCTCAAAGACTCGGCGAGCGCCAGCGAAAGGCAGTCCTTTTTGGGATTTGCCTCCTTCCTGTCGCAGCTTGGGGTGCACCCCTTCCTCCCTGCGGTGCTGGGTGTGGTCTCACTGCGTGCGCCACTGATCACAGtcatggaggagctggagaacaGGGACCTACTGGGTTTCCTCTGGAGGTGTAGGCAgGATCATGTGGGCAGTGAGGCCCCATGTGACCTAACAGAGAGGCGAATTTTCACGATGTCCAAGCAGGTGGCTTCTGCTCTGGAGTACCTACACAAACAGGACCTTCTCCATGGCAACATTGGGGCACGCAGCGTGCTCGTTAGCCGGGAGCTAACAGCCAAGCTGTGGGGATTGGGGAATGCCTATGCAAGGAAGAGCCAGGAAGCCCCTCTATCAGGGGCGCCTTGGCAGAAAAAGTGGCAAGCTCCTGAAGTATTGGCCCGGAGAGAGGCCACTCAGGGCAGCGATGTCTGGTCATTTGGCATCTTGCTGTATGAAATGGTGACGCTGGGGGACGCCCCATTCCCTGACATCTCCATCAACGAGCTGGTGCAGCATCACCAGAGAGGAAAGACGCTGAAGAGACCGGCCAACTGCTCCAACTCACTGTACTCCATCATTAAGATTTGCTGCCAGTGGAAAGAACCCGATCGTGCAACATTGGCTGAAGTGGTCCGCAAGCTCCAATCAGGAGAGAAGAGTGCCAATGACAAATCCGTCATTCGAGTGCCTGAGCCAATCAACATTGAAAAGTACCTGCAGGAGGCGGGATATGGGGAAACTCACAACTACACTGTTTTCTGA

Transcript

SKAU_T00225500

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01323	DSBA	DSBA-like thioredoxin domain	Domain	Interproscan
PF02145	Rap_GAP	Rap/ran-GAP	Family	Interproscan
PF07714	PK_Tyr_Ser-Thr	Protein tyrosine and serine/threonine kinase	Domain	Interproscan
PF21022	Rap-GAP_dimer	Rap/Ran-GAP protein dimerization domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000331	Domain	Rap/Ran-GAP domain	Interproscan
IPR000719	Domain	Protein kinase domain	Interproscan
IPR001245	Domain	Serine-threonine/tyrosine-protein kinase, catalytic domain	Interproscan
IPR001853	Domain	DSBA-like thioredoxin domain	Interproscan
IPR011009	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR035974	Homologous_superfamily	Rap/Ran-GAP superfamily	Interproscan
IPR036249	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR044088	Family	Glutathione S-transferase kappa	Interproscan
IPR050989	Family	Rap1/Ran GTPase-activating	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15711	RAP GTPASE-ACTIVATING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0004364	Molecular Function	glutathione transferase activity	Interproscan
GO:0004602	Molecular Function	glutathione peroxidase activity	Interproscan
GO:0004672	Molecular Function	protein kinase activity	Interproscan
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0006468	Biological Process	protein phosphorylation	Interproscan
GO:0006749	Biological Process	glutathione metabolic process	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0051056	Biological Process	regulation of small GTPase mediated signal transduction	Interproscan
GO:0090630	Biological Process	activation of GTPase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-