Gene detail

Detailed information of SKAU_T00221170 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00221170	NUCLEAR HORMONE RECEPTOR	CM056382.1	66947601	66960813	+

Gene Structure

More details in Jbrowse Sequence

CDS

Transcript

SKAU_T00221170

CATAAATACCCTTAGCGTGTGGTGCTACTACTGTACCCCTTGAACACGTACGGacggacagagggacagaggcagacagacagacagacagacagacaattgCAATCCTCCCCGAGAAAGGATTATACAAAGTTTTCAAGTAATGAGGACATTACTGGCATTATGTAGATAAATGCCTAAAGGCTGCCCTCCAGGTGGCCACCGGAAGTACAACTTGTTGTTTGCTAGTTTTTCGGTCGAACAACAGATGCTTGAAAGGGAGGTGTTGGGTTGATGTAGGGACGACCGTAACCCGAAGGCCTCATTTCTCGTTTTTGCTAATCTATTTGGCAGCCCCGAAGTCTACACCCTTTATTGAATAATCTGTAATTAAACCCgatagttacatttatttagctaAATTAGCTTAGCTAACGTCTTTAGTTGTGCACcatagctagctatctagcttaGCTATTCTAGTCGGATGCCGTGGATCTTAAATGAGTTGACTAGCTAGTAAGCCGTCAgctggctaactagctagctacctgtcaAGTTAGGGTTAGCTAGCTGTGGCCGGCTAGCTTTAAAGTGCTGTTGAATGAATGTCGACGTAGCTTTCttgttatccagctagctagcaaggtaGCTTTTAGATGCAGACACTGACATGGTTGTTGACATATTTGTCTTAGGTAACGCTAGCTAAAGTTGTCTAATTgtattgctagctaacgttagttatttcTTAAATGTAACTAAGAAAGCCAGGGCTTCTATGATTGTAGACAGCCAAGTTGGCTACCAAGCACATAACGTTTCTCTTAGCTAatgtgagctaacgttagctagctagacataTCTTATTTGCAAACTAGCGCTAGGCTAACGTTAGAATGTTTACTAACGTTAGTTTATGACTatcaaactaacgttaggtaacgttagtGAGCTAGCTTTTCTCACattggctaacgttacttgagtaGCTATTAGTATGTAACGGTAGATATAATTACGTCTATGCATTCGTAGTCGTATCCGAAGTCTGTTTTAAGTTACAACTTCGCTCTCCACCAGCCAGGTATTAGCCTTAAGCTAGTCCGCGGCATTGTGTTGACTATTAGGCCTCTTGATCGTGGGCTGTGAACGTGGTTTGCAAGCATAAGATTCACAAAATCTGTAAAGCTACGGGGCAGCCATGGGTGATAGCAGAGATTCACGCAGCCCAGACAGTTCCTCGGTTTCGCCCCCTCCCTCAGCCCAGTGTTCTCCTCCAGCAGCATCCATGACCTCTCTGCCTCCCATCACTTCTGCCGTCAGCAGCCCCATCAGCAGCCTGGGCTCTCCCTTCTCAGTCATCAGCTCCTCCTTGGGATCTCCAGGGGCCCCCGGGACTCCCTCTGCGGGCTACAGCCTCATCAGCAACCCCCAGGTAAACTCCACAGTGTCGGTCTCGGGGCCGCACTCGGTCAGCAGCTCAGACGATGTGAAGCCCCCCCTCGGACTCAAGCCTCTGCCAGCCCACAGCCCTGGACCCGTGCTGTCCCAGAAGCGGCTCTGTGGCATCTGCGGGGACCGCTCCTCTGGGAAGCACTATGGGGTGTACAGCTGTGAGGGCTGTAAGGGCTTCTTTAAGCGCACCGTGAGGAAGGACCTGAGCTACACCTGCAGAGACAACAAGGACTGCCTGGTGGACAAGCGCCAGCGCAACCGCTGCCAATACTGCCGCTACCAGAAGTGCCTGGCCATGGGCATGAAGAGAGAAGTTCTGTTTCTCCTTCCTACAGCAGTCAAACATGAATGACAGATCTGTGCAGGAAGAGAGGCAGAGGAATAAGGAGCGTGAAGGGGAAATGGAGTCCACCAGCGCGGTGAATGAGGAGATGCCGGTGGAGAAGATCCTGGAGGCGGAGATGGCGGTAGAGCAGAAAACAGAGCTGCACTCTGATGGAAGCTCCGGGGCCAACTCTCCCAACGATCCGGTCACCAATATCTGCCAGGCTGCAGACAAGCAGCTCTTCACCCTGGTGGAGTGGGCCAAGAGAATCCCACACTTCTCCGAGCTTCCCCTGGACGACCAGGTCATCCTTCTGCGCGCAGGCTGGAATGAGCTGCTAATCGCCTCGTTCTCGCACCGCTCCATCACGGTGAAGGACGGCATCCTGCTGGCCACAGGGCTGCATGTCCACCGGAACAGCGCGCACAGCGCCGGCGTGGGGGCCATCTTCGACAGGTACTGCCACAGCTGCTGAGCGCGCCACGCCGCAGCCGCGAGCTGCATTGCTACGCCACTCCTCTGCTGTTGTGTGGACGCTCCTGTGATGCGCTGACTCAATGTGGATGTTGCTAACGTTCAGGGATAAAACCCTTGTCTCTCACACTGTCATTCACTCTGCTTTGACTTCTCTGTCAGTGGAACTGCAAAGGCTGCATTATCAGCTGCACTTTGTttatttagcagactctcttgtCGTGAGCGGCTTACAACACAGTGCATATTCAAAGTTGTGCACCAACAATTCTGACACACAAACCCAGAAAGTAACAAGCCCTCTGTCGCCCACTCTGTACTAAC

Protein

Gene family

Gene family	Subfamily
Transcription Factors Family	ESR-like
Transcription Factors Family	Miscellaneous
Transcription Factors Family	Miscellaneous
Transcription Factors Family	NGFIB-like
Transcription Factors Family	RXR-like
Transcription Factors Family	SF-like
Transcription Factors Family	THR-like

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00104	Hormone_recep	Ligand-binding domain of nuclear hormone receptor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000003	Family	Retinoid X receptor/HNF4	Interproscan
IPR000536	Domain	Nuclear hormone receptor, ligand-binding domain	Interproscan
IPR001723	Family	Nuclear hormone receptor	Interproscan
IPR035500	Homologous_superfamily	Nuclear hormone receptor-like domain superfamily	Interproscan
IPR050274	Family	Nuclear hormone receptor family NR2 subfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24083	NUCLEAR HORMONE RECEPTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003707	Molecular Function	nuclear steroid receptor activity	Interproscan
GO:0004879	Molecular Function	nuclear receptor activity	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0008270	Molecular Function	zinc ion binding	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan
GO:0032526	Biological Process	response to retinoic acid	Interproscan
GO:0044323	Molecular Function	retinoic acid-responsive element binding	Interproscan
GO:0048384	Biological Process	retinoic acid receptor signaling pathway	Interproscan
GO:0048856	Biological Process	anatomical structure development	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-