Gene detail

Detailed information of SKAU_T00219300 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00219300	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	CM056382.1	60884383	60901425	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00219300

ATGTCCACCGTGTTGCTGCAAGTTGGACAGTGTGGGAACCAACTGGGTTTGGAGTGGTGGAAGTTGCTTATGCATACATCAGGCCAGGGCAGAGAAAATGATGGgaACCCGTTCTGCGCCAGAGACGGGAAGCTGGGAGCAGTGTTTGTGGACAGCGAGCCTAAGGTTTTGGGGGGTGCTCGGTCTCTGGTGAGAAGCAAGAAACTGCATGAGTCCAATGTCATTGCAGACAAAGGAGGAAGGGGAAGCAACTGGGCATATGGATACCATGGACGGCAGGGTGAGGGGGAACATGGGCTTCTCCAGCAGACAATGGAGGCGGTGCGCAAGGAGGTGGAGAGACGGGACTGTTACTGTGGGACAATACTGCTCCATAGCCTGAGTGGGGGCACTGGGTCGGGGCTGGGTGCTAGGCTGTGTGAGGAGATTCGGGAGGAGTTTCCTGCAGGTCAtatcctgtctgtgtctgtggcaCCATACCAGAGTGGAGAGAGCCCTCTACAGCACTACAACACCCTACTGAGTCTGACCTCCCTGCAAAGGTCTGTTGATGGTTTGCTCCTGTTTTACAATGACCAGACTCTTGCTGTGGTAGAGGCCCAGCGAGGGACACCCAAGGGCCCATCTAGCCCCTCTTGTCCTGGGAACTCCTTCTCAACTATAAATGCACACATAGCCAGAGGTCTTGCTGGCCTCCTGCTTCCTGTCCAAAGCCTCACCACTTCCAGTGGTCTAAGTCTGGGAATGGAACCTTGGGAGCTGGTGAGGTCTGTCTGCCCTCTGCCTGCAGCCAAACTGCTGCACACCACACAGGCGTGTTCAAGGGAGAGGATGCATTGGGATAGCCTGGCCAGCTCAAGCCTCCAGGACCTGCCTCATCTCTCTCCAGAAGGGAAACCTCACAGTAGCCGGGCAGTGTTGGCAGTTGCCCGTGGGACCCAGGACTCCTTCCTCACATCCAGTGCCCTGCAGCGGCTGAGACGGGGTCACCGCTGTGTCTCCTGGAACCCATTCCCCATTGACCACTGGACAGACCCCTGTGACCAGCTAGGCTGTTCCCGCTCCTCTCAATGCCTCACAGTGTGCTCCAATCACAGCAGTGCATCTGACCTACTGGGTCAGAACGCTGCGTGGCCTGCGTGCTGTTATTTGTGCTTCAGCATGGCGGTGGTCATCCGTTTACAGGGACTCAGAACGACAGCTGGTTCTGAGGACATTCGCAATTTCTTCACTGGCCTAAAAATTCCAGATGGTGGGGTGCACATTATCGGTGGGGCGTTTGGGGAGGCTTTTATCATCTTTGCATCAGATGACCATGCGAGGCGGGCGATGACACGCTCTGGAGGGAGCATCAAAGACTCCCCAGTCAACCTCTTGCTGAGCAGCAAAGCTGAGATGCAAAATGTCCTTGAGGAAAATGCAAAGAAAACGGAGATGAACAAAAATAGGGTGTATAACGAGGGGTTCAGAAGAGAAGAAACCAACATGGCACCCCACGCTTTTGCAGAGGACCCGTCGGTTGAAATACGAAGAATGGACCTCTTGGAAATGGATGGCATCTCAGGTCCTGCTGTTAGGGAGGATACGCGTGTTCATCATACAAGAAAGGCTCTGGCAAGTGGAAACGATGGTTTCTACTTGCATTTGCAAGGACTGCCATTCTCCTTATCCAGTGAAGAtgttagattttttttccaaGGGTTGCAAGTCGAAGACATCATTCTTATGAGAAATCGGCGTGGCCAGAATAACGGGATGGGTATAGTCAGATTTGCCACACTGCATGATGCTCACGAGGGCCTGAATCGGGACCGTCAGTACATTGGAAATCGGTTTATAGAAATAAACTCCTGCTCAGAGAAGCAGTGGGTTGAAGCTGGGGGCAGCGTGGGACATTACATGGGCAACAGTCCTGAGTTTCCCAGGGAGTCACCTCCATCTTCTATGGAAAAGCGGTATACTCGACAACGAACAAGGTCAATTTCCCCAGACAGGTATAGGTCACGGTCTTCTTCTCCATCAGGCAATGAATATTGTATTCTGATGGAAAACCTCTCATACTCTGTAGAGAAGCGAAGCATAAAAGATTTCTTCCATCCAGTGGAACTGAAGGAAGACCAGATTCTTCATCTGCATAACAAAAATGGGAGTAGGTCAAGGTCAGCTTTTGTGCTGTTCAGGAGCCTGAAAGACTACTGTATTGGCTTGACCCGCCACAAAGAAACCTTTGCCTCCCGAACTGTCTATGTGTCTCCAATTTCCAAGGAAAAGATGGTGGCGATGCTGGACTCCACAGAAGCGAAGATGGAGAAGTACCATGAAAGGCCCAGCACACCACTGGACAAGTCTCAACGCTCACAAAGGCCAAAGTATGAATCGGAAAGGATCTGCATCTATGTCCGTAACCTGCCTTTTGATGTGCGCAAGGTTGAGATCATGGACTTCTTTCAAGGTTTTGGGATATCTGAGGAGATGGTTCACCTGCTGCGTGATGACAAGGGAGCTGGGCTTGGTGAGGCTTTGGTGACATTTCAATCAGAGGGTGAGGCACTGAGGGCTGAGTCTCTGAATGGGGAGAGGTTCCTTGGGTCTGAGGTGATGTTGAAATGCATCTCTAGGATGCAAATGCAGGAGTTTGGTGTCATGGAGCATCCAAGGGAGAGTGTGGAGCTTCCACCGAGGATGAGGAGCCCGGAAGGCTATTCTCCCAGACACagggaacggcccaacaatccactTGATGATGAATATCCAGACATTGGAATCCCCAGTATTGTCAACATGCCCCTAAGCAACCTTCCTGTCCACTCTCATGGAAGTAGCGGTAGGTTTGGTTCACGCAGGGATGGCCGTGACACGTTTGTTGATCGAGATGATGGATCTGTGCAAAGAGGACTTGGTAACCAATTTGACGGTCCTGCCTGTCTGAAGCTAATTAATCTCCCTCAGAATATCACCATTGATGAGATCTATGACTTCTGCTATGGATACCGGGTGATTCCAGGCTCTGTCTCATTGCAGTACAACAAGAATGGGGTTCCTAAAGGCTGCGCAACTGTGGTCTTTGAATCACGCCAGGAGGCGCAGACCGCAATTCAGGAGCTGAGTGAAAGACCAATTGGGACCAAAAGAATTAAATTGCTTTTTCTTTAA

Transcript

SKAU_T00219300

aaaaaacacgacgatacatttattattattctccACATTAGCTAATTACACAAGTAAAGGAGTAATTTACAAATGAGCAAGCTAGCGCTAGCTCGTTGTTCAGATACaaatagatagctaacgttagttcgccTGCAAACTTTCTGGGTTCTGCCCCGTGAGTTGATACTACTTGTAAGTTGTTATCAGAGGAAGAACAGCCAGACTGTGGTTTCCAACTGAAATGAAACTTTGAACTCCAGCATAAGGgttataacgtaacgttagctgcTTGTTATCAAAGCGTTggttaccaggaaaaacaaatggGCACTTGTTGCCCCGTGCAAGTTCATGTCACTCGTTAAAGTGGTGATTCGCCAAAATATTTAAAGCAGCGACAACAATCTAATCGCAAAATATCAATGACAGACGAGAAGCGCGATATAGCTACCTAGCTGACTTTACAAAATATCAGTACTTCTAAAAAGTTTATTGACGATCGTCATAGCTTATTTGTAACCCTTTAGACTAGCAGACAGCACCAGTGTTTTCTGAAGATTCACTAAGAATTTCTAACATCGTCGTtcagtttaaccctttgaagagtaagttttttggaacatttttttcaaaattctaagtcggtgatctagaactccattgctttcagtcaccagtagtgattgttacatcagcgttagaatgttcagGTCTTTGTTGTTGCTGTAGCCATACACCATGTCCACCGTGTTGCTGCAAGTTGGACAGTGTGGGAACCAACTGGGTTTGGAGTGGTGGAAGTTGCTTATGCATACATCAGGCCAGGGCAGAGAAAATGATGGgaACCCGTTCTGCGCCAGAGACGGGAAGCTGGGAGCAGTGTTTGTGGACAGCGAGCCTAAGGTTTTGGGGGGTGCTCGGTCTCTGGTGAGAAGCAAGAAACTGCATGAGTCCAATGTCATTGCAGACAAAGGAGGAAGGGGAAGCAACTGGGCATATGGATACCATGGACGGCAGGGTGAGGGGGAACATGGGCTTCTCCAGCAGACAATGGAGGCGGTGCGCAAGGAGGTGGAGAGACGGGACTGTTACTGTGGGACAATACTGCTCCATAGCCTGAGTGGGGGCACTGGGTCGGGGCTGGGTGCTAGGCTGTGTGAGGAGATTCGGGAGGAGTTTCCTGCAGGTCAtatcctgtctgtgtctgtggcaCCATACCAGAGTGGAGAGAGCCCTCTACAGCACTACAACACCCTACTGAGTCTGACCTCCCTGCAAAGGTCTGTTGATGGTTTGCTCCTGTTTTACAATGACCAGACTCTTGCTGTGGTAGAGGCCCAGCGAGGGACACCCAAGGGCCCATCTAGCCCCTCTTGTCCTGGGAACTCCTTCTCAACTATAAATGCACACATAGCCAGAGGTCTTGCTGGCCTCCTGCTTCCTGTCCAAAGCCTCACCACTTCCAGTGGTCTAAGTCTGGGAATGGAACCTTGGGAGCTGGTGAGGTCTGTCTGCCCTCTGCCTGCAGCCAAACTGCTGCACACCACACAGGCGTGTTCAAGGGAGAGGATGCATTGGGATAGCCTGGCCAGCTCAAGCCTCCAGGACCTGCCTCATCTCTCTCCAGAAGGGAAACCTCACAGTAGCCGGGCAGTGTTGGCAGTTGCCCGTGGGACCCAGGACTCCTTCCTCACATCCAGTGCCCTGCAGCGGCTGAGACGGGGTCACCGCTGTGTCTCCTGGAACCCATTCCCCATTGACCACTGGACAGACCCCTGTGACCAGCTAGGCTGTTCCCGCTCCTCTCAATGCCTCACAGTGTGCTCCAATCACAGCAGTGCATCTGACCTACTGGGTCAGAACGCTGCGTGGCCTGCGTGCTGTTATTTGTGCTTCAGCATGGCGGTGGTCATCCGTTTACAGGGACTCAGAACGACAGCTGGTTCTGAGGACATTCGCAATTTCTTCACTGGCCTAAAAATTCCAGATGGTGGGGTGCACATTATCGGTGGGGCGTTTGGGGAGGCTTTTATCATCTTTGCATCAGATGACCATGCGAGGCGGGCGATGACACGCTCTGGAGGGAGCATCAAAGACTCCCCAGTCAACCTCTTGCTGAGCAGCAAAGCTGAGATGCAAAATGTCCTTGAGGAAAATGCAAAGAAAACGGAGATGAACAAAAATAGGGTGTATAACGAGGGGTTCAGAAGAGAAGAAACCAACATGGCACCCCACGCTTTTGCAGAGGACCCGTCGGTTGAAATACGAAGAATGGACCTCTTGGAAATGGATGGCATCTCAGGTCCTGCTGTTAGGGAGGATACGCGTGTTCATCATACAAGAAAGGCTCTGGCAAGTGGAAACGATGGTTTCTACTTGCATTTGCAAGGACTGCCATTCTCCTTATCCAGTGAAGAtgttagattttttttccaaGGGTTGCAAGTCGAAGACATCATTCTTATGAGAAATCGGCGTGGCCAGAATAACGGGATGGGTATAGTCAGATTTGCCACACTGCATGATGCTCACGAGGGCCTGAATCGGGACCGTCAGTACATTGGAAATCGGTTTATAGAAATAAACTCCTGCTCAGAGAAGCAGTGGGTTGAAGCTGGGGGCAGCGTGGGACATTACATGGGCAACAGTCCTGAGTTTCCCAGGGAGTCACCTCCATCTTCTATGGAAAAGCGGTATACTCGACAACGAACAAGGTCAATTTCCCCAGACAGGTATAGGTCACGGTCTTCTTCTCCATCAGGCAATGAATATTGTATTCTGATGGAAAACCTCTCATACTCTGTAGAGAAGCGAAGCATAAAAGATTTCTTCCATCCAGTGGAACTGAAGGAAGACCAGATTCTTCATCTGCATAACAAAAATGGGAGTAGGTCAAGGTCAGCTTTTGTGCTGTTCAGGAGCCTGAAAGACTACTGTATTGGCTTGACCCGCCACAAAGAAACCTTTGCCTCCCGAACTGTCTATGTGTCTCCAATTTCCAAGGAAAAGATGGTGGCGATGCTGGACTCCACAGAAGCGAAGATGGAGAAGTACCATGAAAGGCCCAGCACACCACTGGACAAGTCTCAACGCTCACAAAGGCCAAAGTATGAATCGGAAAGGATCTGCATCTATGTCCGTAACCTGCCTTTTGATGTGCGCAAGGTTGAGATCATGGACTTCTTTCAAGGTTTTGGGATATCTGAGGAGATGGTTCACCTGCTGCGTGATGACAAGGGAGCTGGGCTTGGTGAGGCTTTGGTGACATTTCAATCAGAGGGTGAGGCACTGAGGGCTGAGTCTCTGAATGGGGAGAGGTTCCTTGGGTCTGAGGTGATGTTGAAATGCATCTCTAGGATGCAAATGCAGGAGTTTGGTGTCATGGAGCATCCAAGGGAGAGTGTGGAGCTTCCACCGAGGATGAGGAGCCCGGAAGGCTATTCTCCCAGACACagggaacggcccaacaatccactTGATGATGAATATCCAGACATTGGAATCCCCAGTATTGTCAACATGCCCCTAAGCAACCTTCCTGTCCACTCTCATGGAAGTAGCGGTAGGTTTGGTTCACGCAGGGATGGCCGTGACACGTTTGTTGATCGAGATGATGGATCTGTGCAAAGAGGACTTGGTAACCAATTTGACGGTCCTGCCTGTCTGAAGCTAATTAATCTCCCTCAGAATATCACCATTGATGAGATCTATGACTTCTGCTATGGATACCGGGTGATTCCAGGCTCTGTCTCATTGCAGTACAACAAGAATGGGGTTCCTAAAGGCTGCGCAACTGTGGTCTTTGAATCACGCCAGGAGGCGCAGACCGCAATTCAGGAGCTGAGTGAAAGACCAATTGGGACCAAAAGAATTAAATTGCTTTTTCTTTAAATTCAGATGCATTTGACTTGCAAAGTATGTTGTTTCTTTACTCAACCAAGGTTTTTGAAAAAAAGGTTTTGTGTGTGGTTACATGGTTTTTTTCATCACGCCTTTTTTTGTGTTGCCGAATGTGTACTAAGAGGAGGAAGGAGCAGAACCCATGTTGTGCATAAGTTATGACTACTTCTGACATATACTGTTAAGCTAAACACAAAAACAGttagaatatattttttttaatgcaatattaCGGACTAGAATGTAAttattagctgaagatattgaatcCATTGGTTTGCTATAAGAAAATGCCTTCAGCGTCAGTAATTATCTTCTGGAGGATTTAATATGAAGAAAAAAGTTTTATACCTTTGATTTGAATTTCATCAATGTAGTTTTAGTTTAATTACCTGGGTGTgttttatataaatgtatataaaaaatgaaTGGTTGTGGAACAAAATCCTTCCTCTGGTTTACCTTGAGTTCAGTATTTGATTATTTTCCTTAAATGATATACACAACAGGGCTTTTTAGAGAATCTGGATTTAATTTAAGTTCTTTGAATTTGCAAGTTCACAGATTGGTATTTGATTGCTTCACTTATAAGGGACTGTGCCATGCAGTTACCCTGGTTAATTTGAAGTCTTAACTCCTTAGTCGTTAGACAGGACATGGGGTTGGGCAGTTCTTTGGGCCATTACCCATGGTCCATCTCTTTTAAATACAGAGTGCCAAGTAGTGGCAGTTGGTGGTATTTTTGAAGTCTGATGTAATTATTCTAAAATTGCAACCTTCAGCCTTCCGAGGTCAGGTATCCCAATGTTTATGGAAAGATAATCGACTTCTGCATTAAACAGACTTTCTTTTCTCCGTCTTGTCTTTtttatgttctttttttaattttgtctTCTTGGCCTTTCCTCCCCAGGTCATCACTCAGACACCCCATACTTGCAGTCAGCCCTTGTGAATAATTACTGATGCTAAAAGTGCCGGGGTTTGCCTGAAGATGACTTTTCTAACTGAAATGTGTAGCTTCCAAAAGGGCTACTGAAAAGAAC

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan
PF00091	Tubulin	Tubulin/FtsZ family, GTPase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000217	Family	Tubulin	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR002967	Family	Delta tubulin	Interproscan
IPR003008	Domain	Tubulin/FtsZ, GTPase domain	Interproscan
IPR008280	Homologous_superfamily	Tubulin/FtsZ, C-terminal	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR017975	Conserved_site	Tubulin, conserved site	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR036525	Homologous_superfamily	Tubulin/FtsZ, GTPase domain superfamily	Interproscan
IPR047188	Domain	RNA-binding protein 12B, RNA recognition motif 4	Interproscan
IPR050666	Family	Epithelial Splicing Regulatory	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13976	HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005200	Molecular Function	structural constituent of cytoskeleton	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0005874	Cellular Component	microtubule	Interproscan
GO:0007017	Biological Process	microtubule-based process	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-