Gene detail

Detailed information of SKAU_T00219100 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00219100	PAR-6-RELATED	CM056382.1	60030355	60071469	-

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00219100

Transcript

SKAU_T00219100

atggagctaccgaccacagtcggcactggcacggtctggattcgatccaaggccgtgaggctcatccatACTACAGAGAAGCCGTGCATATTGGCGCATTTGGGGGTACCAGGAATATACCGCAGTCTTACCCCTCTCATTGAGAAGTACTTCACCATTATTTCCAATGAGGAATTATTTCAGAACAGAGAGCGCTTCGCTGACCAAATCCGTGCGGTGTTCCTATGGAACAATACGCCCAAGGTAGACTGCAGTTTGCTGCAGCTCTTGCCTAACCTGAAGGTGGTCGTCAGCGGCGGGGTGGGAGTGGACCACCTGGATATACCCATGATCAACAGCTTCGGTGTGAAAGTGTGCAACACCCCGGAGGTTGTGGACAACGCCACTGCAGATATTGGGATGGCTCTGATGCTCGCATCGGCGCGGAAACTCATCTATGGACACAATTTCTCCCACTTTCATGAAGATGACGATTTGCCAGAGAGTTCGATGGGCACTGATGTCAGTGGTGCCACGCTGGGCATCATTGGGATGGGCCGGATCGGGTACAGGATTGCCAAACGGGCCCAGGCCTTTGAGATGAGGATCCTATACCATAATCGAAACCGTAGggaagaggaagatgaaagaGCAGTCGGAGCACAGTATTGTGAAAAGATGGAAGAGCTGCTGCAGCAGTCAGACTTTGTCATGGTTGTGGTGAACCTGTCGCCTCAAACGCACAAGCTGATTGGTGCCAGGGAGTTGGCCATGATGAAGCCCACAGGCACACTCATCAACATCAGCAGAGGTCTGGTAGTAGACCAAGATGCTCTCATTGACTCCCTCCAGAGGGGGGTGATCCGAGCGGCAGCATTGGATGTGACATACCCTGAACCCTTGCCAAGGGGGCATGCCCTACTTTCTCTTCCAAATGTCATTGTTCTGCCACACATGGGCACTCACACTGTGGAGACAACTCGTCTGATGTTGGAGAGGATGGCGACCAATGCCCTGGCAGCTCTCAGCGGAGCACAGCCTCCTGATGAGTTTGGGGCAGAATTCCGGCGGTTTTCCGTGGACCGATCCAAACCTGGGAAGTTTGAGGATTTCTACACTCTTGTCCTGACCTTACACCAGCTGGCCAACATGGAAGTGGTCATTGGCTATGCGGATGTCCATGGTGACCTGCTTCCcattaataatgatgataatttcTGCAAGGCTGTGACCAGTGCCCATCCTCTGCTCAGAGTCTTCATACAGAGACAAGAAGAAGTGGACTACAGTGACTTTGGTGGCAACACCCTAGCACGGCGGAAGAAAGCCGTGGTGATGCTGCGCAACGATGTGGCCCGCAAGCATCCGCAGATCCGGATCGGCGTGCCCCAGGACTTCCGGCCAGTGTCGTCCATCATTGATGTGGACATCCTGCCCAAGTCCCACCGCCGAGTGCGTCTGTATCGCCACGGCTCAGACAAGCCACTGGGCTTTTACATCCGGGACGGAACTAGCATGAGGGTCACAAACCATGGCCTGGAGAAGGTTCCGGGCATATTCATCTCGCGTATGGTGCCCGGCGGGCTGGCAGAAAGCACAGGTCTTCTAGCCATCAATGACGAGGTTCTGGAGGTCAACGGCATCGAGGTGATGGGGAAATCACTGGACCAGGTGACGGACATGATGATCGCCAACAGCCACAACCTGATCATCACAGTGAAGCCGGTCAACCAGCGGAACAACATTTTGCGAGGCAGTCGCATGTCTGGCAGTTCAGGCCGGTCCACAGACAGCAGCGGCTCCGCCGGTCACCTGGGCCTGGGGGCAGGACCCGGCGGACTTGCTGCGGATGAGCTGGAGAGCGACGAGGAGTCCGACGTCGTCATTGAAAGAAGCCTCAAACGACCCTCCCGACGCTCCACCGCATCTACCGCCTCCATTGCCTCCCGTGGCCACAATCATGCCCCGCCGAGCTCCATCCACCGCCCGGCCTCAGCCGTCATAAGCAGCAGCGCGTCCTTCCACTCTCAGCCCAGCCTCAATGGGACAGCCAATGGCAGCCTGAGCTTTAAGGCGCACAGGGACCCTGCTTACAGAAGTAGTCCTGCCCTCCGAGAGAGTAACAACAGCCTGCACCACATCCTTCACTCCCTGCGGACAGACCCACGACATAGCTTGGCAATGCCCAGCGGCGGGGTAGAGGAGGATGGCACTGTTATCACGCTCTAGAATCCCCCCCCAACACACTAATGACTGATCTTCCACAGACTGCTGTGtgaatctgggggggggggaacatcAGCACTTTTCTACATAAAGAAACTTTTTCAAACACATAATACAggctttttaaatgtataaatgttTTGATGTCCAATGAAttgtctttttaaaataagtggatATATTTTAGCAGCAGTATATGCATCTAGTATGCATCATTTTAGTGCATTGTAATGTGAAAGATATGTTTAGTTTGTAAATAGGACCAACAAtctgttaaagcttttacctttacTCATATTTTTCAAAAGATCTGTCATTACTCTTGGTGGTTTCCTTTATTAGGGCATTTAAACATAGCATTGGTAGTTATGTATTAACATTTCATATCATAAATGTATTTTAGTTAGTATAATGAGTAGTAGTCAGTGTTCCAATGCTGTCAAATGCACTGGGGTGAATTTTAAAAAAGTTGTCTTGTGGTGTGTGGTACATTACTGAAAGGTTCAGTTCAGACATTGTTCCAAACTTAAAGATTAATcttttaaaatgataaaacatACAGGAATTCTGCTTTCACTTTATGCTTGTTTTTAAAGCAGACAACGGTAATACAAACTGTTTTCTCTGTTTTCTCAGTGTTATGTGGAAACGGGGCCTCTCTACCACACGACAGTTACCTGCAGTGTGTACCTTTGGGCTTCCTTAGCTGTGAATTTACTGGGAACCTCATGAGATTCAGGATAAATACTGTATGTCCCTGTTGTAAGTGTCCCTTGACTACAAGTGAATCCAACACAATCCCATACAATTTGTAGGGTGTGGGCACTAATCCAATCCTACACATTGGCGGTTTATTGAGATAATGTCACTTCCAtatgttattgttgttattgctGTTTTTAATGAGCATAATTTGACTCAAAGGGACCAACTTTAATTCCAATTTCaggtaaatataggaatgtttcCTTTCATTCATTCATGGCAAGACGGTGATGTATATGTTCAATGTTAACTAACCACAGACCAGAGATGTATTACGACGTGATGGGGTACTGGacataaacacagaaacacagaaagcCATACAGTGTTTGGAGGTATTGTCCATATTTTAAAGGAGTGATTTCCAGAGATAAGatacttttaaaaagtctttCATAAGAGCAAATAAAATGTTCAGGTTTTAGCACTCAGTATTTTTATAGAGATATTTGTTTATAATAACTCCTGTTTTATTTGTAGAGAATCAGAATTGATTCCATGTCAGACTATGACCTTATAAAATGTGGATTCCATaccaataacataacataatttaaCTCGTTTGAAGGTCAAGAGAAACTGTTAATTTCAGATTAAACAATGTCACATCCTCAGAGGCAGAGGTGTCACAGTACCACCTGCTGGTAGGAGGGAGAACAGCTTTGCTTCAGCACCACACTACCTCCCCATAGCATTAGGAGCTgaaatgttacctatttttatTTATAACAGAATTGTCTGTGAATTTTGCtgga

Protein

Gene family

Gene family	Subfamily
Ubiquitin Family	ULD\|UFD\|PB1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00389	2-Hacid_dh	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	Domain	Interproscan
PF00564	PB1	PB1 domain	Domain	Interproscan
PF00595	PDZ	PDZ domain	Domain	Interproscan
PF02826	2-Hacid_dh_C	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000270	Domain	PB1 domain	Interproscan
IPR001478	Domain	PDZ domain	Interproscan
IPR006139	Domain	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain	Interproscan
IPR006140	Domain	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain	Interproscan
IPR029752	Conserved_site	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1	Interproscan
IPR034868	Domain	Partitioning defective protein 6, PB1 domain	Interproscan
IPR036034	Homologous_superfamily	PDZ superfamily	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR051741	Family	Partitioning defective 6 homolog protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14102	PAR-6-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005938	Cellular Component	cell cortex	Interproscan
GO:0007098	Biological Process	centrosome cycle	Interproscan
GO:0007163	Biological Process	establishment or maintenance of cell polarity	Interproscan
GO:0016324	Cellular Component	apical plasma membrane	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0051287	Molecular Function	NAD binding	Interproscan
GO:0060341	Biological Process	regulation of cellular localization	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-