Detailed information of SKAU_T00217310 in Synaphobranchus kaupii Gene info
Gene IDAnnotationChromosomeStartEndStrand
SKAU_T00217310STEROL REGULATORY ELEMENT-BINDING PROTEIN CLEAVAGE-ACTIVATING PROTEINCM056382.15220600352246441+

Gene Structure
More details in Jbrowse Sequence
CDS
Transcript
Protein

Gene family
Gene familySubfamily
Ubiquitin FamilyUBD|Other|Beta-prp
Ubiquitin FamilyE3|E3 adaptor Cullin RING|CDC20
Ubiquitin FamilyE3|E3 adaptor Cullin RING|DWD

Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400WD40WD domain, G-beta repeatRepeatInterproscan
PF09807ELP6Elongation complex protein 6FamilyInterproscan
PF12349Sterol-sensingSterol-sensing domain of SREBP cleavage-activationFamilyInterproscan

InterPro
InterPro termTypeDescriptionSource
IPR000731DomainSterol-sensing domainInterproscan
IPR001680RepeatWD40 repeatInterproscan
IPR015943Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan
IPR018627FamilyElongator complex protein 6Interproscan
IPR019775Conserved_siteWD40 repeat, conserved siteInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR030225FamilySterol regulatory element-binding protein cleavage-activating proteinInterproscan
IPR036322Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan

PANTHER
PANTHER termDescriptionSource
PTHR46378STEROL REGULATORY ELEMENT-BINDING PROTEIN CLEAVAGE-ACTIVATING PROTEINInterproscan

Gene Ontology
GO termsCategoryDescriptionSource
GO:0000139Cellular ComponentGolgi membraneInterproscan
GO:0002098Biological ProcesstRNA wobble uridine modificationInterproscan
GO:0005515Molecular Functionprotein bindingInterproscan
GO:0005789Cellular Componentendoplasmic reticulum membraneInterproscan
GO:0032933Biological ProcessSREBP signaling pathwayInterproscan
GO:0032934Molecular Functionsterol bindingInterproscan
GO:0032936Cellular ComponentSREBP-SCAP complexInterproscan
GO:0033588Cellular Componentelongator holoenzyme complexInterproscan
GO:0045540Biological Processregulation of cholesterol biosynthetic processInterproscan

KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
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