Gene detail

Detailed information of SKAU_T00213800 in Synaphobranchus kaupii Gene info

Gene ID	Annotation	Chromosome	Start	End	Strand
SKAU_T00213800	MDM2-BINDING PROTEIN	CM056382.1	39114216	39150304	+

Gene Structure

More details in Jbrowse Sequence

CDS

SKAU_T00213800

ATGGATAGATATGTGCTATTAGTTAGTTTAAATCTAAACGAACAACATAACAAAGTAATAAATAGCTTTTCAGGACTGGAAAGAGCCGGGCAGATATATGACTCTCTCAAATGCATTGCCGTTTCCAACTCAACAACCAAGATATCTCCATTTCCACCCTGCTCTCTTGCGGGAACTCCCGTGTCACAGAGATGGTACTTTGGCATTCAGGCCAGTCGTGGATCCTCACAGTTCTGCAGCATGGAGTGGGAGGAGTTGGGGACGGGGGCCCATAAGAGTGACAGTGAGGAGATGGGGCCCTCAGCCATGGAGGCGTGCCACAGTGCATTAGACAGTCCGGGTGAGGGGGAAGACATGGAAGACGCTGGTTCACAGGCTGAACTATATGAAGAGGCAGCTGAAGGCCTGCATCATTTGTCAGATAAGCTTCCAGCCCCAGGAAGGGCTCTCCTAGATGTTATTTTATTGGCCGCGGATCAGGAAGCGCCCAGCCTGAAGGAGTTTCTTCCGGTCTTCGGCTCACTGAAGCATATGCAAGTGTGGCATTCCGCTAAGATGACCATCGTGACAGAGAACAATGCTGGATGGCAGAAAGCAGCCTCATACTTGTCGGCCATTATATGTGGTCCCGACAAAATTCTGAATTGTATCGACGACAAGGAATTCTGGAGGGGTAGTGTTCTTATTAAAGAGAAAAAGTTTGTCTCGGAGCTGCAGTTCGGCGGATTTTGCCTGAAGGACCAGCGCGGCTACTCGAACCCTCTCGAACCCTCACAGAAGCACACGGACCACAAACTTCTTTCTGAGGTATTCCACTATTACCGGCCGGTTCTGGACCTGGTCCAGTTGATCACGGTCTCGGATCTTCCCATCTTCCTCCTCTCCAGCACAGAATACAAACTTGAGCTGTGTACTAAATCAAATAAATCCAAACTGCTCCTGGACCAGCTGAGAACTCTTCGGGGAAAGGTGGGGGCGCTGTTCTCTTTAGCCTGCACGGTCAGCTCTCTGGCTGCTCCTCCGGCCACGCAACTCAGCAGTCAGAAATGGAAGGAGTTTGTGGCTCAGAGACCCAAGTCCTGGCCTGTTCCAGATGTGGAGGTGAAAGGGGAGAGTGGCCACTACTTCCTGTTGGTGCAGGGGGCGGAAACTGGGGGTTGCACTGCACGGATGATCCACTCAGCCAATCAGGTTAACGGAGCTGCCGCCTTGGCAACTGTCAATGGGATCCTCAGAGAGAAGACCCAGTCATCAGGCACAAACACTGCGGACTGGCTGCGGTCACTTCCTTGTCTCCGTGGAGACCAGCTGATTCAGAGGGAGAGGAAGCTGGCGAAGGTACAGACGTTGGCCCTGAAGGAATGCCTACgcaggagagaggagGTGCAGAAGCCGGCCTCTGTACCCGTCAACGACTTGAAGGTTCTACTGAGCCTGGCCCGCAAGCAGTACCTTAAGATGCATGATTCCGGCCTGCCTAAAGCAGCACTCCtgctggaggggaaggagaacTGCAATAGCAAGGCTCCAGAAGTGGAGGTGAAGATCTCACAGCGTGCGGGGTGGCCAGAGAGAAGCGTGCTTCAGAATTGTGAGAATCAGAGGAAGAACCGCCAGCGGACAAGGTCCAGTCTAATGCTGGCAGGGGGCTCCACAGAGAGTCTGCTGGGGCCCAAGGAGGGTCAGAGAGTGGCTCCCGCACTGCTGGATGCCCGGGAGCTGCTGAAGCACTTCACTCCAGAGGGCCTGCCTAGCGGAGAACTACAGCCTCTGCACCTACAAAGAGGCGAGCACACCTTCCAGCTGTCCCCCGACTTGACGCCCAGGAAAGTGTCCCAGCTCCCCTTCAGCAAGGCGGCCAATTCCCACTACCATGGCATAGAATTCTGCCTGGATGAACAGAAGGCTTTGGACCGCGACCGGAGTTTTGTGAAGCTGCAGAGCCGTCTCATTCGCTACGAGGGACCCAAACCACCTGCTCCAAGGATTCCTGCCTCGCCCCTTTCGCCCtcagccccgcccccctctccaGCTGTGCTCTCCGAGCCGGGCAGTGTCCCGGACGGAGAGGCGCTCCTTGCGGAAATGAGGGGGGAGCCTCGCAGGCTGAAGCGCCAGTCCTGGGACACTGACAGCATCTACCCGCACAAACGGTTGTCCAAGTCGGAGAGCAGCGAGTCCCTGGGCTCCCAGTGCAGCGGAAGCAGCGGGACCCACCCGGCCGTGCGGGCCTTAAGACAGCAGCGCCCCGGGTCCCAGTCCTCCACGGCAGGCCCCAGACCCGCCCCCGTGGCGCCCGCAGCCCCCAAGCAGCAACCGCACACCCAGGGCCTGCCTCAAGCCCTCTCGGGGGACCAGGCCGGCAAAGAATCCCGCTCGCAGAAACATTCTAGGATGCTGAAAGAGGTTGTGGCAAAGACATTGAAACACCATGGGATCACAGGTGACCACAGCAGCTTCGACGCCTGCAGCCAAAGGCTTTTTGAAATATCAAAGTTCTATCTTAAGGATTTGAAAACTTCCAGAGGTCTTCATGAGGAAATGAAAAAAGCTGCCAGCAGCAATGCGAAACAGGTGATTGATTGGGTTCTGGAAAAGGCCTCTGTGAAGTGA

Transcript

SKAU_T00213800

CCTCAATGTGACAGCCGGTGCAACCTCATGAAGAGGCCGATGTGTACAACGTCCAGAAAATAATAGTTCCATAAGTTTCTTGAAATGCTATTTCGTCAGTAATCCCTTTTTAGTATGGAGACATAGATTGCACATTTTACTAAGCATATAATTTCGCAAGTATTCTTAATATAGCTGACCAAACATCTGATGTTGCTTTATCTGTTGTTTCAGGCGTGGttttgttttaaagtattttgaGGTAGCTCTGAACGTCATAGGATGACAACTTCCGTTCTGCCAGCGCGCGGGGAATTTTATTTTTTGATGGATATCAGTGTGCGAGCCGTCAAGATACCTGTCGAGCTGGATACATCTCTGTGGACTGAACAATTTAAAACACAATGGATAGATATGTGCTATTAGTTAGTTTAAATCTAAACGAACAACATAACAAAGTAATAAATAGCTTTTCAGGACTGGAAAGAGCCGGGCAGATATATGACTCTCTCAAATGCATTGCCGTTTCCAACTCAACAACCAAGATATCTCCATTTCCACCCTGCTCTCTTGCGGGAACTCCCGTGTCACAGAGATGGTACTTTGGCATTCAGGCCAGTCGTGGATCCTCACAGTTCTGCAGCATGGAGTGGGAGGAGTTGGGGACGGGGGCCCATAAGAGTGACAGTGAGGAGATGGGGCCCTCAGCCATGGAGGCGTGCCACAGTGCATTAGACAGTCCGGGTGAGGGGGAAGACATGGAAGACGCTGGTTCACAGGCTGAACTATATGAAGAGGCAGCTGAAGGCCTGCATCATTTGTCAGATAAGCTTCCAGCCCCAGGAAGGGCTCTCCTAGATGTTATTTTATTGGCCGCGGATCAGGAAGCGCCCAGCCTGAAGGAGTTTCTTCCGGTCTTCGGCTCACTGAAGCATATGCAAGTGTGGCATTCCGCTAAGATGACCATCGTGACAGAGAACAATGCTGGATGGCAGAAAGCAGCCTCATACTTGTCGGCCATTATATGTGGTCCCGACAAAATTCTGAATTGTATCGACGACAAGGAATTCTGGAGGGGTAGTGTTCTTATTAAAGAGAAAAAGTTTGTCTCGGAGCTGCAGTTCGGCGGATTTTGCCTGAAGGACCAGCGCGGCTACTCGAACCCTCTCGAACCCTCACAGAAGCACACGGACCACAAACTTCTTTCTGAGGTATTCCACTATTACCGGCCGGTTCTGGACCTGGTCCAGTTGATCACGGTCTCGGATCTTCCCATCTTCCTCCTCTCCAGCACAGAATACAAACTTGAGCTGTGTACTAAATCAAATAAATCCAAACTGCTCCTGGACCAGCTGAGAACTCTTCGGGGAAAGGTGGGGGCGCTGTTCTCTTTAGCCTGCACGGTCAGCTCTCTGGCTGCTCCTCCGGCCACGCAACTCAGCAGTCAGAAATGGAAGGAGTTTGTGGCTCAGAGACCCAAGTCCTGGCCTGTTCCAGATGTGGAGGTGAAAGGGGAGAGTGGCCACTACTTCCTGTTGGTGCAGGGGGCGGAAACTGGGGGTTGCACTGCACGGATGATCCACTCAGCCAATCAGGTTAACGGAGCTGCCGCCTTGGCAACTGTCAATGGGATCCTCAGAGAGAAGACCCAGTCATCAGGCACAAACACTGCGGACTGGCTGCGGTCACTTCCTTGTCTCCGTGGAGACCAGCTGATTCAGAGGGAGAGGAAGCTGGCGAAGGTACAGACGTTGGCCCTGAAGGAATGCCTACgcaggagagaggagGTGCAGAAGCCGGCCTCTGTACCCGTCAACGACTTGAAGGTTCTACTGAGCCTGGCCCGCAAGCAGTACCTTAAGATGCATGATTCCGGCCTGCCTAAAGCAGCACTCCtgctggaggggaaggagaacTGCAATAGCAAGGCTCCAGAAGTGGAGGTGAAGATCTCACAGCGTGCGGGGTGGCCAGAGAGAAGCGTGCTTCAGAATTGTGAGAATCAGAGGAAGAACCGCCAGCGGACAAGGTCCAGTCTAATGCTGGCAGGGGGCTCCACAGAGAGTCTGCTGGGGCCCAAGGAGGGTCAGAGAGTGGCTCCCGCACTGCTGGATGCCCGGGAGCTGCTGAAGCACTTCACTCCAGAGGGCCTGCCTAGCGGAGAACTACAGCCTCTGCACCTACAAAGAGGCGAGCACACCTTCCAGCTGTCCCCCGACTTGACGCCCAGGAAAGTGTCCCAGCTCCCCTTCAGCAAGGCGGCCAATTCCCACTACCATGGCATAGAATTCTGCCTGGATGAACAGAAGGCTTTGGACCGCGACCGGAGTTTTGTGAAGCTGCAGAGCCGTCTCATTCGCTACGAGGGACCCAAACCACCTGCTCCAAGGATTCCTGCCTCGCCCCTTTCGCCCtcagccccgcccccctctccaGCTGTGCTCTCCGAGCCGGGCAGTGTCCCGGACGGAGAGGCGCTCCTTGCGGAAATGAGGGGGGAGCCTCGCAGGCTGAAGCGCCAGTCCTGGGACACTGACAGCATCTACCCGCACAAACGGTTGTCCAAGTCGGAGAGCAGCGAGTCCCTGGGCTCCCAGTGCAGCGGAAGCAGCGGGACCCACCCGGCCGTGCGGGCCTTAAGACAGCAGCGCCCCGGGTCCCAGTCCTCCACGGCAGGCCCCAGACCCGCCCCCGTGGCGCCCGCAGCCCCCAAGCAGCAACCGCACACCCAGGGCCTGCCTCAAGCCCTCTCGGGGGACCAGGCCGGCAAAGAATCCCGCTCGCAGAAACATTCTAGGATGCTGAAAGAGGTTGTGGCAAAGACATTGAAACACCATGGGATCACAGGTGACCACAGCAGCTTCGACGCCTGCAGCCAAAGGCTTTTTGAAATATCAAAGTTCTATCTTAAGGATTTGAAAACTTCCAGAGGTCTTCATGAGGAAATGAAAAAAGCTGCCAGCAGCAATGCGAAACAGGTGATTGATTGGGTTCTGGAAAAGGCCTCTGTGAAGTGAGAGAGGTACATGGTCTGCAGCGCATGGTCACCAATGGGTTCCTTGGGCTCTGGGACCATCTGGTCTTGTGTCACCATGGTAACCGTGGCAGTGTGTGAaatctttgttattttttaatatatatattttattctgttaATACCTTTATCTGCAGGTTATGTATCTTGGCTTCAAGACAGGCAGACTTTTTGAAGGCTCAGATAAAGAGAATTGTTATGAACAGTCTGCTTTTAATAGATTAAATCATGGCAGCAGTGAGAAAATAAAAGGCATGGTACGAGCATTACCTAGAGAAGTACTCAATGCATTATTTTGACTTTTATGAGAACACTCTGTACATAACAGGTGCTCAGGGATATCCTTTAATAGGCAAATATGTCATGTTCTGTTTCTATGATTGTCTGAAATGTTTTTGTATCTGTATGTCTTTAAATATTGTCAATACACTATATGCATTAAagtgtttgtttttaaataattaacTTACGATTACTGAAATGCTCTTATCTGAGTGCTGGCACACAAGTATTGTTTATATTTTAGTGTATGCTTTATTTTTTGTGGCCCAATATACCTGTTTTACTTGTAAATGACACCGTATATTCATAAGTAAAACAAATGCAACGAAAG

Protein

Gene family

Gene family	Subfamily
-	-

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14918	MTBP_N	MDM2-binding	Family	Interproscan
PF14919	MTBP_mid	MDM2-binding	Family	Interproscan
PF14920	MTBP_C	MDM2-binding	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029418	Domain	MDN2-binding protein, C-terminal domain	Interproscan
IPR029420	Domain	MDM2-binding protein, central domain	Interproscan
IPR029421	Domain	MDM2-binding protein, N-terminal domain	Interproscan
IPR039061	Family	MDN2-binding protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14382	MDM2-BINDING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000776	Cellular Component	kinetochore	Interproscan
GO:0007089	Biological Process	traversing start control point of mitotic cell cycle	Interproscan
GO:0031396	Biological Process	regulation of protein ubiquitination	Interproscan
GO:0034501	Biological Process	protein localization to kinetochore	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
-	-	-	-	-	-